>ref|XM_479918.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1176

 Score = 44.1 bits (22), Expect = 0.093
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                
Query: 83  cgtcggtgtagatgaactgaagaagggccttgnacac 119
           |||||||||||||||| || || ||||||||| ||||
Sbjct: 763 cgtcggtgtagatgaaatggaggagggccttgaacac 727

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 44.1 bits (22), Expect = 0.093
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                    
Query: 83      cgtcggtgtagatgaactgaagaagggccttgnacac 119
               |||||||||||||||| || || ||||||||| ||||
Sbjct: 1633603 cgtcggtgtagatgaaatggaggagggccttgaacac 1633567

>dbj|AP004591.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0582D05
          Length = 150483

 Score = 44.1 bits (22), Expect = 0.093
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                  
Query: 83    cgtcggtgtagatgaactgaagaagggccttgnacac 119
             |||||||||||||||| || || ||||||||| ||||
Sbjct: 33103 cgtcggtgtagatgaaatggaggagggccttgaacac 33067

>gb|AF527809.1| Sorghum bicolor clone BAC SB_BBc0234M12 php200725 orthologous region
          Length = 108553

 Score = 42.1 bits (21), Expect = 0.37
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                 
Query: 84    gtcggtgtagatgaactgaagaagggccttgnacac 119
             ||||||||||||||| || || ||||||||| ||||
Sbjct: 90689 gtcggtgtagatgaagtggagcagggccttgaacac 90654

>ref|XM_465522.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2337

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 41   tcccgcgtccacctccgcct 60
            ||||||||||||||||||||
Sbjct: 1015 tcccgcgtccacctccgcct 1034

>gb|AC135190.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
            OSJNBa0064H09, complete sequence
          Length = 146742

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 85   tcggtgtagatgaactgaag 104
            ||||||||||||||||||||
Sbjct: 6286 tcggtgtagatgaactgaag 6305

>gb|AC136998.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBa0082P17, complete sequence
          Length = 157539

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 85     tcggtgtagatgaactgaag 104
              ||||||||||||||||||||
Sbjct: 113904 tcggtgtagatgaactgaag 113923

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 85       tcggtgtagatgaactgaag 104
                ||||||||||||||||||||
Sbjct: 26703828 tcggtgtagatgaactgaag 26703847

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 41       tcccgcgtccacctccgcct 60
                ||||||||||||||||||||
Sbjct: 15717763 tcccgcgtccacctccgcct 15717744

>dbj|AP005514.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0035A24
          Length = 176446

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 41     tcccgcgtccacctccgcct 60
              ||||||||||||||||||||
Sbjct: 126450 tcccgcgtccacctccgcct 126431

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 85       tcggtgtagatgaactgaag 104
                ||||||||||||||||||||
Sbjct: 27028891 tcggtgtagatgaactgaag 27028910

>gb|AF402959.1| Oryza sativa chromosome 4 clones V17 and 214, genomic sequence
          Length = 64224

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                       
Query: 88   gtgtagatgaactgaagaagggccttg 114
            ||||||||||| |||||||| ||||||
Sbjct: 5117 gtgtagatgaagtgaagaagcgccttg 5091

>ref|XM_473960.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1017

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 88  gtgtagatgaactgaagaagggccttg 114
           ||||||||||| |||||||| ||||||
Sbjct: 692 gtgtagatgaagtgaagaagcgccttg 666

>emb|AL606669.4|OSJN00106 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0060E08,
            complete sequence
          Length = 166951

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                       
Query: 88   gtgtagatgaactgaagaagggccttg 114
            ||||||||||| |||||||| ||||||
Sbjct: 9693 gtgtagatgaagtgaagaagcgccttg 9667

>emb|AL606645.2|OSJN00079 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053K19,
              complete sequence
          Length = 187601

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                         
Query: 88     gtgtagatgaactgaagaagggccttg 114
              ||||||||||| |||||||| ||||||
Sbjct: 170097 gtgtagatgaagtgaagaagcgccttg 170071

>emb|AL161497.2|ATCHRIV9 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 9
          Length = 159629

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 10   gaactctggaacagagtcggtgt 32
            ||||||||||||||| |||||||
Sbjct: 8862 gaactctggaacagattcggtgt 8884

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                           
Query: 88       gtgtagatgaactgaagaagggccttg 114
                ||||||||||| |||||||| ||||||
Sbjct: 31836827 gtgtagatgaagtgaagaagcgccttg 31836801

>gb|AF071527.1| Arabidopsis thaliana BAC F9H3, from chromosome IV near 18.8 cM,
             complete sequence
          Length = 95519

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 10    gaactctggaacagagtcggtgt 32
             ||||||||||||||| |||||||
Sbjct: 44199 gaactctggaacagattcggtgt 44177


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 628,693
Number of Sequences: 3902068
Number of extensions: 628693
Number of successful extensions: 42740
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42637
Number of HSP's gapped (non-prelim): 103
length of query: 124
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 103
effective length of database: 17,151,101,840
effective search space: 1766563489520
effective search space used: 1766563489520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)