ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal5o12 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC145322.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0096N19, complete sequence Length = 178671 Score = 135 bits (68), Expect = 2e-28 Identities = 158/188 (84%) Strand = Plus / Plus Query: 359 ccgctgaacggcttgtacactttgagcgcttcgataacgttggcgatggagcccgctgcg 418 |||||||||||| |||||| |||||||| |||| |||| |||||||||||| || ||| Sbjct: 60318 ccgctgaacggccggtacaccttgagcgcgtcgaccacgtcggcgatggagccggcggcg 60377 Query: 419 gcggcgatggacacgatgaggcatccgacgctgagcatcctaaggcagatcccctgcgtg 478 ||||||| ||| |||| |||||| || ||||||| | | | ||||||| || | ||| | Sbjct: 60378 gcggcgacggagacgacgaggcaggcggcgctgaggaccttgaggcagagccaccgcgcg 60437 Query: 479 ctcctcccgggcacgccgcgctgcctgatgtacatctcgacggggaagtagacggtgagc 538 |||| | |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 60438 ctccctcgccgcacgccgcgctgcgcgatgtacatctcgacggggaagtagacggtgagc 60497 Query: 539 ggccagaa 546 |||||||| Sbjct: 60498 ggccagaa 60505
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 135 bits (68), Expect = 2e-28 Identities = 158/188 (84%) Strand = Plus / Minus Query: 359 ccgctgaacggcttgtacactttgagcgcttcgataacgttggcgatggagcccgctgcg 418 |||||||||||| |||||| |||||||| |||| |||| |||||||||||| || ||| Sbjct: 4771356 ccgctgaacggccggtacaccttgagcgcgtcgaccacgtcggcgatggagccggcggcg 4771297 Query: 419 gcggcgatggacacgatgaggcatccgacgctgagcatcctaaggcagatcccctgcgtg 478 ||||||| ||| |||| |||||| || ||||||| | | | ||||||| || | ||| | Sbjct: 4771296 gcggcgacggagacgacgaggcaggcggcgctgaggaccttgaggcagagccaccgcgcg 4771237 Query: 479 ctcctcccgggcacgccgcgctgcctgatgtacatctcgacggggaagtagacggtgagc 538 |||| | |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 4771236 ctccctcgccgcacgccgcgctgcgcgatgtacatctcgacggggaagtagacggtgagc 4771177 Query: 539 ggccagaa 546 |||||||| Sbjct: 4771176 ggccagaa 4771169
>dbj|AK104370.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-E06, full insert sequence Length = 1707 Score = 135 bits (68), Expect = 2e-28 Identities = 158/188 (84%) Strand = Plus / Minus Query: 359 ccgctgaacggcttgtacactttgagcgcttcgataacgttggcgatggagcccgctgcg 418 |||||||||||| |||||| |||||||| |||| |||| |||||||||||| || ||| Sbjct: 1542 ccgctgaacggccggtacaccttgagcgcgtcgaccacgtcggcgatggagccggcggcg 1483 Query: 419 gcggcgatggacacgatgaggcatccgacgctgagcatcctaaggcagatcccctgcgtg 478 ||||||| ||| |||| |||||| || ||||||| | | | ||||||| || | ||| | Sbjct: 1482 gcggcgacggagacgacgaggcaggcggcgctgaggaccttgaggcagagccaccgcgcg 1423 Query: 479 ctcctcccgggcacgccgcgctgcctgatgtacatctcgacggggaagtagacggtgagc 538 |||| | |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 1422 ctccctcgccgcacgccgcgctgcgcgatgtacatctcgacggggaagtagacggtgagc 1363 Query: 539 ggccagaa 546 |||||||| Sbjct: 1362 ggccagaa 1355
>dbj|AK068003.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129H02, full insert sequence Length = 1781 Score = 135 bits (68), Expect = 2e-28 Identities = 158/188 (84%) Strand = Plus / Minus Query: 359 ccgctgaacggcttgtacactttgagcgcttcgataacgttggcgatggagcccgctgcg 418 |||||||||||| |||||| |||||||| |||| |||| |||||||||||| || ||| Sbjct: 1529 ccgctgaacggccggtacaccttgagcgcgtcgaccacgtcggcgatggagccggcggcg 1470 Query: 419 gcggcgatggacacgatgaggcatccgacgctgagcatcctaaggcagatcccctgcgtg 478 ||||||| ||| |||| |||||| || ||||||| | | | ||||||| || | ||| | Sbjct: 1469 gcggcgacggagacgacgaggcaggcggcgctgaggaccttgaggcagagccaccgcgcg 1410 Query: 479 ctcctcccgggcacgccgcgctgcctgatgtacatctcgacggggaagtagacggtgagc 538 |||| | |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 1409 ctccctcgccgcacgccgcgctgcgcgatgtacatctcgacggggaagtagacggtgagc 1350 Query: 539 ggccagaa 546 |||||||| Sbjct: 1349 ggccagaa 1342
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 135 bits (68), Expect = 2e-28 Identities = 158/188 (84%) Strand = Plus / Minus Query: 359 ccgctgaacggcttgtacactttgagcgcttcgataacgttggcgatggagcccgctgcg 418 |||||||||||| |||||| |||||||| |||| |||| |||||||||||| || ||| Sbjct: 4790140 ccgctgaacggccggtacaccttgagcgcgtcgaccacgtcggcgatggagccggcggcg 4790081 Query: 419 gcggcgatggacacgatgaggcatccgacgctgagcatcctaaggcagatcccctgcgtg 478 ||||||| ||| |||| |||||| || ||||||| | | | ||||||| || | ||| | Sbjct: 4790080 gcggcgacggagacgacgaggcaggcggcgctgaggaccttgaggcagagccaccgcgcg 4790021 Query: 479 ctcctcccgggcacgccgcgctgcctgatgtacatctcgacggggaagtagacggtgagc 538 |||| | |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 4790020 ctccctcgccgcacgccgcgctgcgcgatgtacatctcgacggggaagtagacggtgagc 4789961 Query: 539 ggccagaa 546 |||||||| Sbjct: 4789960 ggccagaa 4789953
>gb|BT009014.1| Triticum aestivum clone wdk3c.pk006.d6:fis, full insert mRNA sequence Length = 1785 Score = 119 bits (60), Expect = 1e-23 Identities = 159/192 (82%) Strand = Plus / Minus Query: 355 tcagccgctgaacggcttgtacactttgagcgcttcgataacgttggcgatggagcccgc 414 |||||||||||||||| |||| | |||||| | |||| |||| ||| ||||| || || Sbjct: 1539 tcagccgctgaacggccggtactccttgagctcgccgatgacgtcggcaatggacccggc 1480 Query: 415 tgcggcggcgatggacacgatgaggcatccgacgctgagcatcctaaggcagatcccctg 474 |||||||| | |||||||| |||||| || ||||||||||| ||||| | || | | Sbjct: 1479 cgcggcggccacggacacgacgaggcaggcggcgctgagcatctggaggcaaacccaccg 1420 Query: 475 cgtgctcctcccgggcacgccgcgctgcctgatgtacatctcgacggggaagtagacggt 534 |||||||| || |||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1419 cgtgctcccccgtcgcacgccgcgctgcacgatgtacatctcgacggggaagtagacggt 1360 Query: 535 gagcggccagaa 546 ||| |||||||| Sbjct: 1359 gagtggccagaa 1348
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 103 bits (52), Expect = 6e-19 Identities = 58/60 (96%) Strand = Plus / Plus Query: 488 ggcacgccgcgctgcctgatgtacatctcgacggggaagtagacggtgagcggccagaag 547 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4144054 ggcacgccgcgctgcgcgatgtacatctcgacggggaagtagacggtgagcggccagaag 4144113 Score = 103 bits (52), Expect = 6e-19 Identities = 58/60 (96%) Strand = Plus / Minus Query: 488 ggcacgccgcgctgcctgatgtacatctcgacggggaagtagacggtgagcggccagaag 547 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4121527 ggcacgccgcgctgcgcgatgtacatctcgacggggaagtagacggtgagcggccagaag 4121468 Score = 89.7 bits (45), Expect = 9e-15 Identities = 78/89 (87%) Strand = Plus / Plus Query: 353 aatcagccgctgaacggcttgtacactttgagcgcttcgataacgttggcgatggagccc 412 ||||| |||||||||||| ||||||| |||||||| ||||| |||| || ||||||||| Sbjct: 4143919 aatcatccgctgaacggcctgtacaccttgagcgcgtcgatgacgtcagcaatggagccc 4143978 Query: 413 gctgcggcggcgatggacacgatgaggca 441 || |||||||||||||| |||| |||||| Sbjct: 4143979 gcggcggcggcgatggagacgacgaggca 4144007 Score = 73.8 bits (37), Expect = 5e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 353 aatcagccgctgaacggcttgtacactttgagcgcttcgataacgttggcgatggagccc 412 ||||| ||||||||||| ||||||| ||||| || ||||| |||| || ||||||||| Sbjct: 4121662 aatcatccgctgaacggtctgtacaccttgagagcgtcgatgacgtcagcaatggagccc 4121603 Query: 413 gctgcggcggcgatggacacgatgaggca 441 || |||||||||||||| |||| |||||| Sbjct: 4121602 gcagcggcggcgatggagacgacgaggca 4121574 Score = 69.9 bits (35), Expect = 8e-09 Identities = 53/59 (89%) Strand = Plus / Plus Query: 489 gcacgccgcgctgcctgatgtacatctcgacggggaagtagacggtgagcggccagaag 547 |||||||||||||| |||||||||||| ||||| |||||||||||||||||||||| Sbjct: 4892280 gcacgccgcgctgcgcgatgtacatctccgtggggaggtagacggtgagcggccagaag 4892338 Score = 48.1 bits (24), Expect = 0.030 Identities = 27/28 (96%) Strand = Plus / Minus Query: 521 gggaagtagacggtgagcggccagaagc 548 ||||||||||||| |||||||||||||| Sbjct: 4883390 gggaagtagacggagagcggccagaagc 4883363
>dbj|AK106090.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-B07, full insert sequence Length = 1715 Score = 103 bits (52), Expect = 6e-19 Identities = 58/60 (96%) Strand = Plus / Minus Query: 488 ggcacgccgcgctgcctgatgtacatctcgacggggaagtagacggtgagcggccagaag 547 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1390 ggcacgccgcgctgcgcgatgtacatctcgacggggaagtagacggtgagcggccagaag 1331 Score = 73.8 bits (37), Expect = 5e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 353 aatcagccgctgaacggcttgtacactttgagcgcttcgataacgttggcgatggagccc 412 ||||| ||||||||||| ||||||| ||||| || ||||| |||| || ||||||||| Sbjct: 1525 aatcatccgctgaacggtctgtacaccttgagagcgtcgatgacgtcagcaatggagccc 1466 Query: 413 gctgcggcggcgatggacacgatgaggca 441 || |||||||||||||| |||| |||||| Sbjct: 1465 gcagcggcggcgatggagacgacgaggca 1437
>dbj|AK105784.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-G09, full insert sequence Length = 1773 Score = 103 bits (52), Expect = 6e-19 Identities = 58/60 (96%) Strand = Plus / Minus Query: 488 ggcacgccgcgctgcctgatgtacatctcgacggggaagtagacggtgagcggccagaag 547 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1368 ggcacgccgcgctgcgcgatgtacatctcgacggggaagtagacggtgagcggccagaag 1309 Score = 89.7 bits (45), Expect = 9e-15 Identities = 78/89 (87%) Strand = Plus / Minus Query: 353 aatcagccgctgaacggcttgtacactttgagcgcttcgataacgttggcgatggagccc 412 ||||| |||||||||||| ||||||| |||||||| ||||| |||| || ||||||||| Sbjct: 1503 aatcatccgctgaacggcctgtacaccttgagcgcgtcgatgacgtcagcaatggagccc 1444 Query: 413 gctgcggcggcgatggacacgatgaggca 441 || |||||||||||||| |||| |||||| Sbjct: 1443 gcggcggcggcgatggagacgacgaggca 1415
>dbj|AK099164.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023073O03, full insert sequence Length = 1709 Score = 103 bits (52), Expect = 6e-19 Identities = 58/60 (96%) Strand = Plus / Minus Query: 488 ggcacgccgcgctgcctgatgtacatctcgacggggaagtagacggtgagcggccagaag 547 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1393 ggcacgccgcgctgcgcgatgtacatctcgacggggaagtagacggtgagcggccagaag 1334 Score = 73.8 bits (37), Expect = 5e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 353 aatcagccgctgaacggcttgtacactttgagcgcttcgataacgttggcgatggagccc 412 ||||| ||||||||||| ||||||| ||||| || ||||| |||| || ||||||||| Sbjct: 1528 aatcatccgctgaacggtctgtacaccttgagagcgtcgatgacgtcagcaatggagccc 1469 Query: 413 gctgcggcggcgatggacacgatgaggca 441 || |||||||||||||| |||| |||||| Sbjct: 1468 gcagcggcggcgatggagacgacgaggca 1440
>dbj|AK061470.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-D07, full insert sequence Length = 1797 Score = 103 bits (52), Expect = 6e-19 Identities = 58/60 (96%) Strand = Plus / Minus Query: 488 ggcacgccgcgctgcctgatgtacatctcgacggggaagtagacggtgagcggccagaag 547 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1370 ggcacgccgcgctgcgcgatgtacatctcgacggggaagtagacggtgagcggccagaag 1311 Score = 89.7 bits (45), Expect = 9e-15 Identities = 78/89 (87%) Strand = Plus / Minus Query: 353 aatcagccgctgaacggcttgtacactttgagcgcttcgataacgttggcgatggagccc 412 ||||| |||||||||||| ||||||| |||||||| ||||| |||| || ||||||||| Sbjct: 1505 aatcatccgctgaacggcctgtacaccttgagcgcgtcgatgacgtcagcaatggagccc 1446 Query: 413 gctgcggcggcgatggacacgatgaggca 441 || |||||||||||||| |||| |||||| Sbjct: 1445 gcggcggcggcgatggagacgacgaggca 1417
>dbj|AK061448.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-E03, full insert sequence Length = 1725 Score = 103 bits (52), Expect = 6e-19 Identities = 58/60 (96%) Strand = Plus / Minus Query: 488 ggcacgccgcgctgcctgatgtacatctcgacggggaagtagacggtgagcggccagaag 547 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1391 ggcacgccgcgctgcgcgatgtacatctcgacggggaagtagacggtgagcggccagaag 1332 Score = 73.8 bits (37), Expect = 5e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 353 aatcagccgctgaacggcttgtacactttgagcgcttcgataacgttggcgatggagccc 412 ||||| ||||||||||| ||||||| ||||| || ||||| |||| || ||||||||| Sbjct: 1526 aatcatccgctgaacggtctgtacaccttgagagcgtcgatgacgtcagcaatggagccc 1467 Query: 413 gctgcggcggcgatggacacgatgaggca 441 || |||||||||||||| |||| |||||| Sbjct: 1466 gcagcggcggcgatggagacgacgaggca 1438
>dbj|AK061444.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-C11, full insert sequence Length = 1662 Score = 103 bits (52), Expect = 6e-19 Identities = 58/60 (96%) Strand = Plus / Minus Query: 488 ggcacgccgcgctgcctgatgtacatctcgacggggaagtagacggtgagcggccagaag 547 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1368 ggcacgccgcgctgcgcgatgtacatctcgacggggaagtagacggtgagcggccagaag 1309 Score = 89.7 bits (45), Expect = 9e-15 Identities = 78/89 (87%) Strand = Plus / Minus Query: 353 aatcagccgctgaacggcttgtacactttgagcgcttcgataacgttggcgatggagccc 412 ||||| |||||||||||| ||||||| |||||||| ||||| |||| || ||||||||| Sbjct: 1503 aatcatccgctgaacggcctgtacaccttgagcgcgtcgatgacgtcagcaatggagccc 1444 Query: 413 gctgcggcggcgatggacacgatgaggca 441 || |||||||||||||| |||| |||||| Sbjct: 1443 gcggcggcggcgatggagacgacgaggca 1415
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 103 bits (52), Expect = 6e-19 Identities = 58/60 (96%) Strand = Plus / Plus Query: 488 ggcacgccgcgctgcctgatgtacatctcgacggggaagtagacggtgagcggccagaag 547 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4144041 ggcacgccgcgctgcgcgatgtacatctcgacggggaagtagacggtgagcggccagaag 4144100 Score = 103 bits (52), Expect = 6e-19 Identities = 58/60 (96%) Strand = Plus / Minus Query: 488 ggcacgccgcgctgcctgatgtacatctcgacggggaagtagacggtgagcggccagaag 547 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4121514 ggcacgccgcgctgcgcgatgtacatctcgacggggaagtagacggtgagcggccagaag 4121455 Score = 89.7 bits (45), Expect = 9e-15 Identities = 78/89 (87%) Strand = Plus / Plus Query: 353 aatcagccgctgaacggcttgtacactttgagcgcttcgataacgttggcgatggagccc 412 ||||| |||||||||||| ||||||| |||||||| ||||| |||| || ||||||||| Sbjct: 4143906 aatcatccgctgaacggcctgtacaccttgagcgcgtcgatgacgtcagcaatggagccc 4143965 Query: 413 gctgcggcggcgatggacacgatgaggca 441 || |||||||||||||| |||| |||||| Sbjct: 4143966 gcggcggcggcgatggagacgacgaggca 4143994 Score = 73.8 bits (37), Expect = 5e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 353 aatcagccgctgaacggcttgtacactttgagcgcttcgataacgttggcgatggagccc 412 ||||| ||||||||||| ||||||| ||||| || ||||| |||| || ||||||||| Sbjct: 4121649 aatcatccgctgaacggtctgtacaccttgagagcgtcgatgacgtcagcaatggagccc 4121590 Query: 413 gctgcggcggcgatggacacgatgaggca 441 || |||||||||||||| |||| |||||| Sbjct: 4121589 gcagcggcggcgatggagacgacgaggca 4121561 Score = 69.9 bits (35), Expect = 8e-09 Identities = 53/59 (89%) Strand = Plus / Plus Query: 489 gcacgccgcgctgcctgatgtacatctcgacggggaagtagacggtgagcggccagaag 547 |||||||||||||| |||||||||||| ||||| |||||||||||||||||||||| Sbjct: 4892262 gcacgccgcgctgcgcgatgtacatctccgtggggaggtagacggtgagcggccagaag 4892320 Score = 48.1 bits (24), Expect = 0.030 Identities = 27/28 (96%) Strand = Plus / Minus Query: 521 gggaagtagacggtgagcggccagaagc 548 ||||||||||||| |||||||||||||| Sbjct: 4883372 gggaagtagacggagagcggccagaagc 4883345
>emb|AL928748.4|CNS08CBL Oryza sativa chromosome 12, . BAC OSJNBb0092O07 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 123469 Score = 103 bits (52), Expect = 6e-19 Identities = 58/60 (96%) Strand = Plus / Plus Query: 488 ggcacgccgcgctgcctgatgtacatctcgacggggaagtagacggtgagcggccagaag 547 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 86450 ggcacgccgcgctgcgcgatgtacatctcgacggggaagtagacggtgagcggccagaag 86509 Score = 103 bits (52), Expect = 6e-19 Identities = 58/60 (96%) Strand = Plus / Minus Query: 488 ggcacgccgcgctgcctgatgtacatctcgacggggaagtagacggtgagcggccagaag 547 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 63923 ggcacgccgcgctgcgcgatgtacatctcgacggggaagtagacggtgagcggccagaag 63864 Score = 89.7 bits (45), Expect = 9e-15 Identities = 78/89 (87%) Strand = Plus / Plus Query: 353 aatcagccgctgaacggcttgtacactttgagcgcttcgataacgttggcgatggagccc 412 ||||| |||||||||||| ||||||| |||||||| ||||| |||| || ||||||||| Sbjct: 86315 aatcatccgctgaacggcctgtacaccttgagcgcgtcgatgacgtcagcaatggagccc 86374 Query: 413 gctgcggcggcgatggacacgatgaggca 441 || |||||||||||||| |||| |||||| Sbjct: 86375 gcggcggcggcgatggagacgacgaggca 86403 Score = 73.8 bits (37), Expect = 5e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 353 aatcagccgctgaacggcttgtacactttgagcgcttcgataacgttggcgatggagccc 412 ||||| ||||||||||| ||||||| ||||| || ||||| |||| || ||||||||| Sbjct: 64058 aatcatccgctgaacggtctgtacaccttgagagcgtcgatgacgtcagcaatggagccc 63999 Query: 413 gctgcggcggcgatggacacgatgaggca 441 || |||||||||||||| |||| |||||| Sbjct: 63998 gcagcggcggcgatggagacgacgaggca 63970
>ref|XM_472988.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1467 Score = 93.7 bits (47), Expect = 6e-16 Identities = 122/147 (82%) Strand = Plus / Minus Query: 400 ggcgatggagcccgctgcggcggcgatggacacgatgaggcatccgacgctgagcatcct 459 ||||||||| ||||| | |||||||| |||||||| |||||| ||| |||||||| | Sbjct: 1416 ggcgatggatcccgccgaggcggcgacggacacgacgaggcacccggcgctgagcgcctg 1357 Query: 460 aaggcagatcccctgcgtgctcctcccgggcacgccgcgctgcctgatgtacatctcgac 519 ||| | | || ||||| ||||| || ||||| | ||||||| |||||||||||| || Sbjct: 1356 gagggacagccactgcgcgctcccccgcggcacccggcgctgcgcgatgtacatctccac 1297 Query: 520 ggggaagtagacggtgagcggccagaa 546 ||||||||||||||||||||||||||| Sbjct: 1296 ggggaagtagacggtgagcggccagaa 1270
>emb|AL731617.3|OSJN00261 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0076N16, complete sequence Length = 146313 Score = 93.7 bits (47), Expect = 6e-16 Identities = 122/147 (82%) Strand = Plus / Minus Query: 400 ggcgatggagcccgctgcggcggcgatggacacgatgaggcatccgacgctgagcatcct 459 ||||||||| ||||| | |||||||| |||||||| |||||| ||| |||||||| | Sbjct: 71071 ggcgatggatcccgccgaggcggcgacggacacgacgaggcacccggcgctgagcgcctg 71012 Query: 460 aaggcagatcccctgcgtgctcctcccgggcacgccgcgctgcctgatgtacatctcgac 519 ||| | | || ||||| ||||| || ||||| | ||||||| |||||||||||| || Sbjct: 71011 gagggacagccactgcgcgctcccccgcggcacccggcgctgcgcgatgtacatctccac 70952 Query: 520 ggggaagtagacggtgagcggccagaa 546 ||||||||||||||||||||||||||| Sbjct: 70951 ggggaagtagacggtgagcggccagaa 70925
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 93.7 bits (47), Expect = 6e-16 Identities = 122/147 (82%) Strand = Plus / Minus Query: 400 ggcgatggagcccgctgcggcggcgatggacacgatgaggcatccgacgctgagcatcct 459 ||||||||| ||||| | |||||||| |||||||| |||||| ||| |||||||| | Sbjct: 24511440 ggcgatggatcccgccgaggcggcgacggacacgacgaggcacccggcgctgagcgcctg 24511381 Query: 460 aaggcagatcccctgcgtgctcctcccgggcacgccgcgctgcctgatgtacatctcgac 519 ||| | | || ||||| ||||| || ||||| | ||||||| |||||||||||| || Sbjct: 24511380 gagggacagccactgcgcgctcccccgcggcacccggcgctgcgcgatgtacatctccac 24511321 Query: 520 ggggaagtagacggtgagcggccagaa 546 ||||||||||||||||||||||||||| Sbjct: 24511320 ggggaagtagacggtgagcggccagaa 24511294 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 508 gtacatctcgacggggaagtagacggtgagcggccagaag 547 ||||||||| ||||||||||||| || ||||||||||||| Sbjct: 23488625 gtacatctccacggggaagtagatggcgagcggccagaag 23488664 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 508 gtacatctcgacggggaagtagacggtgagcggccagaa 546 ||||||||||||||||| ||||| || |||||||||||| Sbjct: 33697710 gtacatctcgacggggaggtagatggcgagcggccagaa 33697672
>emb|AL606613.3|OSJN00051 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K20, complete sequence Length = 116983 Score = 93.7 bits (47), Expect = 6e-16 Identities = 122/147 (82%) Strand = Plus / Minus Query: 400 ggcgatggagcccgctgcggcggcgatggacacgatgaggcatccgacgctgagcatcct 459 ||||||||| ||||| | |||||||| |||||||| |||||| ||| |||||||| | Sbjct: 104762 ggcgatggatcccgccgaggcggcgacggacacgacgaggcacccggcgctgagcgcctg 104703 Query: 460 aaggcagatcccctgcgtgctcctcccgggcacgccgcgctgcctgatgtacatctcgac 519 ||| | | || ||||| ||||| || ||||| | ||||||| |||||||||||| || Sbjct: 104702 gagggacagccactgcgcgctcccccgcggcacccggcgctgcgcgatgtacatctccac 104643 Query: 520 ggggaagtagacggtgagcggccagaa 546 ||||||||||||||||||||||||||| Sbjct: 104642 ggggaagtagacggtgagcggccagaa 104616
>ref|XM_463785.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1814 Score = 87.7 bits (44), Expect = 4e-14 Identities = 44/44 (100%) Strand = Plus / Minus Query: 505 gatgtacatctcgacggggaagtagacggtgagcggccagaagc 548 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1503 gatgtacatctcgacggggaagtagacggtgagcggccagaagc 1460
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 87.7 bits (44), Expect = 4e-14 Identities = 44/44 (100%) Strand = Plus / Minus Query: 505 gatgtacatctcgacggggaagtagacggtgagcggccagaagc 548 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121373 gatgtacatctcgacggggaagtagacggtgagcggccagaagc 121330 Score = 48.1 bits (24), Expect = 0.030 Identities = 36/40 (90%) Strand = Plus / Minus Query: 508 gtacatctcgacggggaagtagacggtgagcggccagaag 547 |||||||||||||||||||| || || |||||||||||| Sbjct: 30016281 gtacatctcgacggggaagtggatggacagcggccagaag 30016242
>dbj|AP005873.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1370C05 Length = 148271 Score = 87.7 bits (44), Expect = 4e-14 Identities = 44/44 (100%) Strand = Plus / Minus Query: 505 gatgtacatctcgacggggaagtagacggtgagcggccagaagc 548 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 115982 gatgtacatctcgacggggaagtagacggtgagcggccagaagc 115939
>dbj|AP004187.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1435_F07 Length = 139041 Score = 87.7 bits (44), Expect = 4e-14 Identities = 44/44 (100%) Strand = Plus / Minus Query: 505 gatgtacatctcgacggggaagtagacggtgagcggccagaagc 548 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 70400 gatgtacatctcgacggggaagtagacggtgagcggccagaagc 70357
>dbj|AK060685.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-G03, full insert sequence Length = 1835 Score = 87.7 bits (44), Expect = 4e-14 Identities = 44/44 (100%) Strand = Plus / Minus Query: 505 gatgtacatctcgacggggaagtagacggtgagcggccagaagc 548 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1524 gatgtacatctcgacggggaagtagacggtgagcggccagaagc 1481
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 83.8 bits (42), Expect = 6e-13 Identities = 48/50 (96%) Strand = Plus / Minus Query: 497 cgctgcctgatgtacatctcgacggggaagtagacggtgagcggccagaa 546 ||||||| |||||||||||||||||||||| ||||||||||||||||||| Sbjct: 20865670 cgctgccggatgtacatctcgacggggaagaagacggtgagcggccagaa 20865621 Score = 67.9 bits (34), Expect = 3e-08 Identities = 40/42 (95%) Strand = Plus / Plus Query: 505 gatgtacatctcgacggggaagtagacggtgagcggccagaa 546 |||||||||||| ||||||||||| ||||||||||||||||| Sbjct: 6693553 gatgtacatctccacggggaagtacacggtgagcggccagaa 6693594 Score = 44.1 bits (22), Expect = 0.48 Identities = 43/50 (86%) Strand = Plus / Minus Query: 497 cgctgcctgatgtacatctcgacggggaagtagacggtgagcggccagaa 546 ||||||| |||||||||||| || ||| |||| || || ||||||||||| Sbjct: 20843730 cgctgccggatgtacatctccaccgggtagtacaccgtcagcggccagaa 20843681
>dbj|AP003613.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0458E11 Length = 148798 Score = 83.8 bits (42), Expect = 6e-13 Identities = 48/50 (96%) Strand = Plus / Minus Query: 497 cgctgcctgatgtacatctcgacggggaagtagacggtgagcggccagaa 546 ||||||| |||||||||||||||||||||| ||||||||||||||||||| Sbjct: 120345 cgctgccggatgtacatctcgacggggaagaagacggtgagcggccagaa 120296 Score = 44.1 bits (22), Expect = 0.48 Identities = 43/50 (86%) Strand = Plus / Minus Query: 497 cgctgcctgatgtacatctcgacggggaagtagacggtgagcggccagaa 546 ||||||| |||||||||||| || ||| |||| || || ||||||||||| Sbjct: 98405 cgctgccggatgtacatctccaccgggtagtacaccgtcagcggccagaa 98356
>ref|XM_463528.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1467 Score = 75.8 bits (38), Expect = 1e-10 Identities = 53/58 (91%) Strand = Plus / Minus Query: 400 ggcgatggagcccgctgcggcggcgatggacacgatgaggcatccgacgctgagcatc 457 ||||||||||||||| |||||||||||||| | || |||||| ||||||||||||||| Sbjct: 1419 ggcgatggagcccgcggcggcggcgatggagatgacgaggcagccgacgctgagcatc 1362 Score = 69.9 bits (35), Expect = 8e-09 Identities = 38/39 (97%) Strand = Plus / Minus Query: 508 gtacatctcgacggggaagtagacggtgagcggccagaa 546 ||||||||| ||||||||||||||||||||||||||||| Sbjct: 1311 gtacatctccacggggaagtagacggtgagcggccagaa 1273
>ref|XM_476538.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1708 Score = 75.8 bits (38), Expect = 1e-10 Identities = 41/42 (97%) Strand = Plus / Minus Query: 506 atgtacatctcgacggggaagtagacggtgagcggccagaag 547 |||||||||| ||||||||||||||||||||||||||||||| Sbjct: 1399 atgtacatctggacggggaagtagacggtgagcggccagaag 1358
>ref|XM_476539.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1775 Score = 75.8 bits (38), Expect = 1e-10 Identities = 41/42 (97%) Strand = Plus / Minus Query: 506 atgtacatctcgacggggaagtagacggtgagcggccagaag 547 |||||||||| ||||||||||||||||||||||||||||||| Sbjct: 1274 atgtacatctggacggggaagtagacggtgagcggccagaag 1233
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 75.8 bits (38), Expect = 1e-10 Identities = 41/42 (97%) Strand = Plus / Plus Query: 506 atgtacatctcgacggggaagtagacggtgagcggccagaag 547 |||||||||| ||||||||||||||||||||||||||||||| Sbjct: 1821497 atgtacatctggacggggaagtagacggtgagcggccagaag 1821538
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 75.8 bits (38), Expect = 1e-10 Identities = 53/58 (91%) Strand = Plus / Plus Query: 400 ggcgatggagcccgctgcggcggcgatggacacgatgaggcatccgacgctgagcatc 457 ||||||||||||||| |||||||||||||| | || |||||| ||||||||||||||| Sbjct: 38304125 ggcgatggagcccgcggcggcggcgatggagatgacgaggcagccgacgctgagcatc 38304182 Score = 69.9 bits (35), Expect = 8e-09 Identities = 38/39 (97%) Strand = Plus / Plus Query: 508 gtacatctcgacggggaagtagacggtgagcggccagaa 546 ||||||||| ||||||||||||||||||||||||||||| Sbjct: 38304233 gtacatctccacggggaagtagacggtgagcggccagaa 38304271
>dbj|AP003561.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1065E10 Length = 183580 Score = 75.8 bits (38), Expect = 1e-10 Identities = 53/58 (91%) Strand = Plus / Plus Query: 400 ggcgatggagcccgctgcggcggcgatggacacgatgaggcatccgacgctgagcatc 457 ||||||||||||||| |||||||||||||| | || |||||| ||||||||||||||| Sbjct: 64950 ggcgatggagcccgcggcggcggcgatggagatgacgaggcagccgacgctgagcatc 65007 Score = 69.9 bits (35), Expect = 8e-09 Identities = 38/39 (97%) Strand = Plus / Plus Query: 508 gtacatctcgacggggaagtagacggtgagcggccagaa 546 ||||||||| ||||||||||||||||||||||||||||| Sbjct: 65058 gtacatctccacggggaagtagacggtgagcggccagaa 65096
>dbj|AP004338.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0507H12 Length = 143030 Score = 75.8 bits (38), Expect = 1e-10 Identities = 41/42 (97%) Strand = Plus / Plus Query: 506 atgtacatctcgacggggaagtagacggtgagcggccagaag 547 |||||||||| ||||||||||||||||||||||||||||||| Sbjct: 26076 atgtacatctggacggggaagtagacggtgagcggccagaag 26117
>dbj|AP003742.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1118_D07 Length = 131449 Score = 75.8 bits (38), Expect = 1e-10 Identities = 41/42 (97%) Strand = Plus / Plus Query: 506 atgtacatctcgacggggaagtagacggtgagcggccagaag 547 |||||||||| ||||||||||||||||||||||||||||||| Sbjct: 73716 atgtacatctggacggggaagtagacggtgagcggccagaag 73757
>dbj|AK120257.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013046A03, full insert sequence Length = 1870 Score = 75.8 bits (38), Expect = 1e-10 Identities = 41/42 (97%) Strand = Plus / Minus Query: 506 atgtacatctcgacggggaagtagacggtgagcggccagaag 547 |||||||||| ||||||||||||||||||||||||||||||| Sbjct: 1401 atgtacatctggacggggaagtagacggtgagcggccagaag 1360
>dbj|AK106110.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-D09, full insert sequence Length = 1708 Score = 75.8 bits (38), Expect = 1e-10 Identities = 41/42 (97%) Strand = Plus / Minus Query: 506 atgtacatctcgacggggaagtagacggtgagcggccagaag 547 |||||||||| ||||||||||||||||||||||||||||||| Sbjct: 1399 atgtacatctggacggggaagtagacggtgagcggccagaag 1358
>dbj|AK103862.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033149D13, full insert sequence Length = 1774 Score = 75.8 bits (38), Expect = 1e-10 Identities = 41/42 (97%) Strand = Plus / Minus Query: 506 atgtacatctcgacggggaagtagacggtgagcggccagaag 547 |||||||||| ||||||||||||||||||||||||||||||| Sbjct: 1273 atgtacatctggacggggaagtagacggtgagcggccagaag 1232
>dbj|AK059325.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-026-A01, full insert sequence Length = 1858 Score = 75.8 bits (38), Expect = 1e-10 Identities = 53/58 (91%) Strand = Plus / Minus Query: 400 ggcgatggagcccgctgcggcggcgatggacacgatgaggcatccgacgctgagcatc 457 ||||||||||||||| |||||||||||||| | || |||||| ||||||||||||||| Sbjct: 1579 ggcgatggagcccgcggcggcggcgatggagatgacgaggcagccgacgctgagcatc 1522 Score = 69.9 bits (35), Expect = 8e-09 Identities = 38/39 (97%) Strand = Plus / Minus Query: 508 gtacatctcgacggggaagtagacggtgagcggccagaa 546 ||||||||| ||||||||||||||||||||||||||||| Sbjct: 1471 gtacatctccacggggaagtagacggtgagcggccagaa 1433
>dbj|AK058572.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-E09, full insert sequence Length = 714 Score = 75.8 bits (38), Expect = 1e-10 Identities = 41/42 (97%) Strand = Plus / Minus Query: 506 atgtacatctcgacggggaagtagacggtgagcggccagaag 547 |||||||||| ||||||||||||||||||||||||||||||| Sbjct: 420 atgtacatctggacggggaagtagacggtgagcggccagaag 379
>emb|AL713953.3|CNS07YPY Oryza sativa chromosome 12, . BAC OJ1134_A05 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 120825 Score = 69.9 bits (35), Expect = 8e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 489 gcacgccgcgctgcctgatgtacatctcgacggggaagtagacggtgagcggccagaag 547 |||||||||||||| |||||||||||| ||||| |||||||||||||||||||||| Sbjct: 46142 gcacgccgcgctgcgcgatgtacatctccgtggggaggtagacggtgagcggccagaag 46084 Score = 48.1 bits (24), Expect = 0.030 Identities = 27/28 (96%) Strand = Plus / Plus Query: 521 gggaagtagacggtgagcggccagaagc 548 ||||||||||||| |||||||||||||| Sbjct: 55032 gggaagtagacggagagcggccagaagc 55059
>emb|BX536967.2|CNS09SBH Oryza sativa chromosome 12, . BAC OSJNBa0029N15 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 141053 Score = 69.9 bits (35), Expect = 8e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 489 gcacgccgcgctgcctgatgtacatctcgacggggaagtagacggtgagcggccagaag 547 |||||||||||||| |||||||||||| ||||| |||||||||||||||||||||| Sbjct: 67679 gcacgccgcgctgcgcgatgtacatctccgtggggaggtagacggtgagcggccagaag 67621 Score = 48.1 bits (24), Expect = 0.030 Identities = 27/28 (96%) Strand = Plus / Plus Query: 521 gggaagtagacggtgagcggccagaagc 548 ||||||||||||| |||||||||||||| Sbjct: 76569 gggaagtagacggagagcggccagaagc 76596
>gb|AC109595.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1212_B02, complete sequence Length = 125650 Score = 67.9 bits (34), Expect = 3e-08 Identities = 40/42 (95%) Strand = Plus / Minus Query: 505 gatgtacatctcgacggggaagtagacggtgagcggccagaa 546 |||||||||||| || |||||||||||||||||||||||||| Sbjct: 58551 gatgtacatctccaccgggaagtagacggtgagcggccagaa 58510
>gb|BT009124.1| Triticum aestivum clone wl1n.pk0014.c11:fis, full insert mRNA sequence Length = 1376 Score = 67.9 bits (34), Expect = 3e-08 Identities = 40/42 (95%) Strand = Plus / Minus Query: 506 atgtacatctcgacggggaagtagacggtgagcggccagaag 547 |||||||||| || |||||||||||||||||||||||||||| Sbjct: 780 atgtacatctggatggggaagtagacggtgagcggccagaag 739
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 67.9 bits (34), Expect = 3e-08 Identities = 40/42 (95%) Strand = Plus / Minus Query: 505 gatgtacatctcgacggggaagtagacggtgagcggccagaa 546 |||||||||||| || |||||||||||||||||||||||||| Sbjct: 20636511 gatgtacatctccaccgggaagtagacggtgagcggccagaa 20636470
>dbj|AP003569.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0425F05 Length = 162858 Score = 67.9 bits (34), Expect = 3e-08 Identities = 40/42 (95%) Strand = Plus / Plus Query: 505 gatgtacatctcgacggggaagtagacggtgagcggccagaa 546 |||||||||||| ||||||||||| ||||||||||||||||| Sbjct: 127679 gatgtacatctccacggggaagtacacggtgagcggccagaa 127720
>dbj|AP003509.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0525F01 Length = 151668 Score = 67.9 bits (34), Expect = 3e-08 Identities = 40/42 (95%) Strand = Plus / Plus Query: 505 gatgtacatctcgacggggaagtagacggtgagcggccagaa 546 |||||||||||| ||||||||||| ||||||||||||||||| Sbjct: 23232 gatgtacatctccacggggaagtacacggtgagcggccagaa 23273
>dbj|AK106762.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-115-E07, full insert sequence Length = 1726 Score = 67.9 bits (34), Expect = 3e-08 Identities = 40/42 (95%) Strand = Plus / Minus Query: 505 gatgtacatctcgacggggaagtagacggtgagcggccagaa 546 |||||||||||| ||||||||||| ||||||||||||||||| Sbjct: 1427 gatgtacatctccacggggaagtacacggtgagcggccagaa 1386
>dbj|AK065891.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013044D15, full insert sequence Length = 1975 Score = 67.9 bits (34), Expect = 3e-08 Identities = 40/42 (95%) Strand = Plus / Minus Query: 505 gatgtacatctcgacggggaagtagacggtgagcggccagaa 546 |||||||||||| || |||||||||||||||||||||||||| Sbjct: 1449 gatgtacatctccaccgggaagtagacggtgagcggccagaa 1408
>ref|XM_472826.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1401 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 508 gtacatctcgacggggaagtagacggtgagcggccagaag 547 ||||||||| ||||||||||||| || ||||||||||||| Sbjct: 1266 gtacatctccacggggaagtagatggcgagcggccagaag 1227
>dbj|AK071044.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023081F09, full insert sequence Length = 1809 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 508 gtacatctcgacggggaagtagacggtgagcggccagaag 547 ||||||||| ||||||||||||| || ||||||||||||| Sbjct: 1374 gtacatctccacggggaagtagatggcgagcggccagaag 1335
>emb|AL606441.3|OSJN00012 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0089K21, complete sequence Length = 139298 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 508 gtacatctcgacggggaagtagacggtgagcggccagaag 547 ||||||||| ||||||||||||| || ||||||||||||| Sbjct: 44528 gtacatctccacggggaagtagatggcgagcggccagaag 44567
>ref|XM_474206.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1410 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 508 gtacatctcgacggggaagtagacggtgagcggccagaa 546 ||||||||||||||||| ||||| || |||||||||||| Sbjct: 1275 gtacatctcgacggggaggtagatggcgagcggccagaa 1237
>emb|AL662953.3|OSJN00153 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011F23, complete sequence Length = 149353 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 508 gtacatctcgacggggaagtagacggtgagcggccagaa 546 ||||||||||||||||| ||||| || |||||||||||| Sbjct: 128770 gtacatctcgacggggaggtagatggcgagcggccagaa 128732
>emb|AL606608.3|OSJN00056 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0015K02, complete sequence Length = 153623 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 508 gtacatctcgacggggaagtagacggtgagcggccagaa 546 ||||||||||||||||| ||||| || |||||||||||| Sbjct: 48153 gtacatctcgacggggaggtagatggcgagcggccagaa 48115
>gb|AF480497.1| Oryza sativa clone BAC 24K23, complete sequence Length = 181577 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 508 gtacatctcgacggggaagtagacggtgagcggccagaa 546 ||||||||||||||||| ||||| || |||||||||||| Sbjct: 128888 gtacatctcgacggggaggtagatggcgagcggccagaa 128850
>ref|XM_467533.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1506 Score = 48.1 bits (24), Expect = 0.030 Identities = 36/40 (90%) Strand = Plus / Minus Query: 508 gtacatctcgacggggaagtagacggtgagcggccagaag 547 |||||||||||||||||||| || || |||||||||||| Sbjct: 1226 gtacatctcgacggggaagtggatggacagcggccagaag 1187
>dbj|AP005052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0654B04 Length = 156907 Score = 48.1 bits (24), Expect = 0.030 Identities = 36/40 (90%) Strand = Plus / Minus Query: 508 gtacatctcgacggggaagtagacggtgagcggccagaag 547 |||||||||||||||||||| || || |||||||||||| Sbjct: 116557 gtacatctcgacggggaagtggatggacagcggccagaag 116518
>dbj|AK070030.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023037N07, full insert sequence Length = 1506 Score = 48.1 bits (24), Expect = 0.030 Identities = 36/40 (90%) Strand = Plus / Minus Query: 508 gtacatctcgacggggaagtagacggtgagcggccagaag 547 |||||||||||||||||||| || || |||||||||||| Sbjct: 1226 gtacatctcgacggggaagtggatggacagcggccagaag 1187
>dbj|AK069508.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023020L23, full insert sequence Length = 1819 Score = 48.1 bits (24), Expect = 0.030 Identities = 27/28 (96%) Strand = Plus / Minus Query: 521 gggaagtagacggtgagcggccagaagc 548 ||||||||||||| |||||||||||||| Sbjct: 1324 gggaagtagacggagagcggccagaagc 1297
>gb|AC013406.7| Homo sapiens BAC clone RP11-341F20 from 2, complete sequence Length = 190018 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Plus Query: 270 ctacttcctttgtatgtaaataattat 296 |||||||||||||||||| |||||||| Sbjct: 127562 ctacttcctttgtatgtacataattat 127588
>emb|BX571879.8| Zebrafish DNA sequence from clone DKEY-238C7 in linkage group 18, complete sequence Length = 252198 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 283 atgtaaataattatagttgtttt 305 ||||||||||||||||||||||| Sbjct: 233709 atgtaaataattatagttgtttt 233687
>emb|CR318588.10| Zebrafish DNA sequence from clone DKEYP-1H4 in linkage group 18, complete sequence Length = 179350 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 283 atgtaaataattatagttgtttt 305 ||||||||||||||||||||||| Sbjct: 71224 atgtaaataattatagttgtttt 71202
>gb|AF339024.1| Fragaria x ananassa pectate lyase B gene, partial cds Length = 5368 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 287 aaataattatagttgttttcaa 308 |||||||||||||||||||||| Sbjct: 2672 aaataattatagttgttttcaa 2693
>dbj|AK102763.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107D14, full insert sequence Length = 1890 Score = 44.1 bits (22), Expect = 0.48 Identities = 43/50 (86%) Strand = Plus / Minus Query: 497 cgctgcctgatgtacatctcgacggggaagtagacggtgagcggccagaa 546 ||||||| |||||||||||| || ||| |||| || || ||||||||||| Sbjct: 1406 cgctgccggatgtacatctccaccgggtagtacaccgtcagcggccagaa 1357
>dbj|AK058304.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-H01, full insert sequence Length = 1823 Score = 44.1 bits (22), Expect = 0.48 Identities = 43/50 (86%) Strand = Plus / Minus Query: 497 cgctgcctgatgtacatctcgacggggaagtagacggtgagcggccagaa 546 ||||||| |||||||||||| || ||| |||| || || ||||||||||| Sbjct: 1403 cgctgccggatgtacatctccaccgggtagtacaccgtcagcggccagaa 1354
>emb|Z68694.1|HSCU177E8 Human DNA sequence from clone LL0XNC01-177E8 on chromosome X Contains the gene for a novel protein, a guanosine monophosphate reductase (GMPR) pseudogene and the gene for a novel protein (MGC45400), complete sequence Length = 40822 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 154 caagaaaatgcaaccaaaggc 174 ||||||||||||||||||||| Sbjct: 30314 caagaaaatgcaaccaaaggc 30294
>emb|BX470068.7| Zebrafish DNA sequence from clone CH211-219C8 in linkage group 1, complete sequence Length = 210511 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 283 atgtaaataattatagttgttttcaacta 311 ||||||||| |||||||||||||||||| Sbjct: 110697 atgtaaatatctatagttgttttcaacta 110669
>gb|AC021351.4|AC021351 Homo sapiens, clone RP11-24N21, complete sequence Length = 164291 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 24 tgttttttcctccggtacagaatta 48 |||||||||||| |||||||||||| Sbjct: 35410 tgttttttcctcaggtacagaatta 35386
>gb|AC129065.3| Didelphis virginiana clone LB3-118L8, complete sequence Length = 166731 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 44 aattagaatcccttcacaaag 64 ||||||||||||||||||||| Sbjct: 78153 aattagaatcccttcacaaag 78133
>gb|DP000023.1| Didelphis virginiana target 1 genomic scaffold Length = 1751794 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 44 aattagaatcccttcacaaag 64 ||||||||||||||||||||| Sbjct: 1663216 aattagaatcccttcacaaag 1663196
>gb|AC079830.9| Oryza sativa chromosome 3 BAC OSJNBb0009F04 genomic sequence, complete sequence Length = 129655 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 ggtgtatgtaatgtatgtat 254 |||||||||||||||||||| Sbjct: 37186 ggtgtatgtaatgtatgtat 37167
>gb|AC008348.5| Drosophila melanogaster clone BACR02I11, complete sequence Length = 191467 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 taaataattatagttgtttt 305 |||||||||||||||||||| Sbjct: 14638 taaataattatagttgtttt 14657
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 ggtgtatgtaatgtatgtat 254 |||||||||||||||||||| Sbjct: 26389146 ggtgtatgtaatgtatgtat 26389127
>gb|AC090683.7| Oryza sativa chromosome 3 BAC OSJNBa0035I24 genomic sequence, complete sequence Length = 134728 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 ggtgtatgtaatgtatgtat 254 |||||||||||||||||||| Sbjct: 1494 ggtgtatgtaatgtatgtat 1513
>gb|AC102783.10| Mus musculus chromosome 14, clone RP23-390K3, complete sequence Length = 199993 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 ccaagaaaatgcaaccaaag 172 |||||||||||||||||||| Sbjct: 126869 ccaagaaaatgcaaccaaag 126888
>emb|AL139404.9| Human DNA sequence from clone RP11-376D11 on chromosome 10 Contains the 5' end of the SSH3BP gene for spectrin SH3 domain binding protein 1, complete sequence Length = 122913 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 tacttcctttgtatgtaaat 290 |||||||||||||||||||| Sbjct: 19602 tacttcctttgtatgtaaat 19583
>gb|AC092366.3| Homo sapiens chromosome 5 clone RP11-461C13, complete sequence Length = 158230 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 264 ttataactacttcctttgtatgta 287 |||||||||||| ||||||||||| Sbjct: 85939 ttataactactttctttgtatgta 85962
>gb|AC099019.1| Drosophila melanogaster, chromosome 2R, region 58C-58D, BAC clone BACR02O12, complete sequence Length = 171594 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 taaataattatagttgtttt 305 |||||||||||||||||||| Sbjct: 3898 taaataattatagttgtttt 3879
>tpg|BK004878.1| TPA: TPA_exp: Oryza sativa (japonica cultivar-group) growth-regulating factor 9 (GRF9) gene, complete cds Length = 5610 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 ggtgtatgtaatgtatgtat 254 |||||||||||||||||||| Sbjct: 2686 ggtgtatgtaatgtatgtat 2667
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 ggtgtatgtaatgtatgtat 254 |||||||||||||||||||| Sbjct: 26480455 ggtgtatgtaatgtatgtat 26480436
>gb|AC149155.3| Xenopus tropicalis clone ISB-242B17, complete sequence Length = 94528 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 tatgtaatgtatgtattgca 258 |||||||||||||||||||| Sbjct: 52715 tatgtaatgtatgtattgca 52696
>gb|AC008873.4|AC008873 Homo sapiens chromosome 5 clone CTD-2199H11, complete sequence Length = 170358 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 264 ttataactacttcctttgtatgta 287 |||||||||||| ||||||||||| Sbjct: 162689 ttataactactttctttgtatgta 162712
>emb|AJ489921.1|SMA489921 Sebaea madagascariensis nuclear ITS1, 5.8S rRNA gene and ITS2, specimen voucher Piso, Wohlhauser, Zeltner M018 (NEU) Length = 632 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 475 cgtgctcctcccgggcacgccgcg 498 ||||||||||||| |||||||||| Sbjct: 211 cgtgctcctcccgcgcacgccgcg 188
>emb|AL645755.20| Zebrafish DNA sequence from clone RP71-1N18 in linkage group 22, complete sequence Length = 141779 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 ggtgtatgtaatgtatgtat 254 |||||||||||||||||||| Sbjct: 40289 ggtgtatgtaatgtatgtat 40270
>emb|CR388051.22| Zebrafish DNA sequence from clone CH211-239B6 in linkage group 15, complete sequence Length = 120027 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 gtgtatgtaatgtatgtatt 255 |||||||||||||||||||| Sbjct: 131 gtgtatgtaatgtatgtatt 150
>gb|AE003456.3| Drosophila melanogaster chromosome 2R, section 64 of 73 of the complete sequence Length = 288451 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 taaataattatagttgtttt 305 |||||||||||||||||||| Sbjct: 244328 taaataattatagttgtttt 244347
>gb|AC004252.1|AC004252 Drosophila melanogaster (P1 DS09121 (D88)) DNA sequence, complete sequence Length = 59498 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 taaataattatagttgtttt 305 |||||||||||||||||||| Sbjct: 52020 taaataattatagttgtttt 52001
>emb|CR524482.18| Zebrafish DNA sequence from clone DKEY-109F24 in linkage group 15, complete sequence Length = 125769 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 gtgtatgtaatgtatgtatt 255 |||||||||||||||||||| Sbjct: 123900 gtgtatgtaatgtatgtatt 123919
>gb|AC154884.15| Mus musculus chromosome 3, clone RP23-145H17, complete sequence Length = 231400 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 449 ctgagcatcctaaggcagat 468 |||||||||||||||||||| Sbjct: 15259 ctgagcatcctaaggcagat 15240
>emb|AL731801.11| Mouse DNA sequence from clone RP23-181L15 on chromosome X, complete sequence Length = 197346 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 aggttcaacaagggcctttc 220 |||||||||||||||||||| Sbjct: 71543 aggttcaacaagggcctttc 71524
>gb|M26533.1|RATRSKG5 R.norvegicus tonin (RSKG-5) gene, complete cds Length = 15433 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 464 cagatcccctgcgtgctcct 483 |||||||||||||||||||| Sbjct: 11382 cagatcccctgcgtgctcct 11401 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,063,663 Number of Sequences: 3902068 Number of extensions: 4063663 Number of successful extensions: 87874 Number of sequences better than 10.0: 91 Number of HSP's better than 10.0 without gapping: 94 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 87183 Number of HSP's gapped (non-prelim): 690 length of query: 548 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 525 effective length of database: 17,143,297,704 effective search space: 9000231294600 effective search space used: 9000231294600 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
