ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal5o10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 44 0.55
2gb|AC137267.2| Genomic sequence for Oryza sativa, Nipponbare str... 44 0.55
3emb|AL513204.10| Human DNA sequence from clone RP11-418B8 on chr... 44 0.55
4emb|AL354749.6| Human DNA sequence from clone RP11-156D10 on chr... 44 0.55
5gb|DQ425094.1| Impatiens necrotic spot virus segment L, complete... 44 0.55
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.55
7emb|BX296551.4| Zebrafish DNA sequence from clone CH211-224L10 i... 44 0.55
8emb|CR388421.11| Zebrafish DNA sequence from clone CH211-73B10 i... 44 0.55
9gb|AC139513.10| Mus musculus chromosome 15, clone RP23-151N6, co... 42 2.2
10gb|AC117784.13| Mus musculus chromosome 15, clone RP24-545F24, c... 42 2.2
11gb|AC125196.4| Mus musculus BAC clone RP23-248M23 from chromosom... 42 2.2
12emb|AJ249324.1|MXP249324 Mentha x piperita mRNA for isopentenyl ... 42 2.2
13gb|AC090691.16| Homo sapiens chromosome 8, clone RP11-338B22, co... 42 2.2
14emb|CR381644.8| Zebrafish DNA sequence from clone CH211-80A15 in... 42 2.2
15gb|AC036214.9| Homo sapiens chromosome 8, clone RP11-26J3, compl... 42 2.2
16gb|AC018952.9| Homo sapiens chromosome 8, clone RP11-498N9, comp... 42 2.2
17gb|AC018902.8| Homo sapiens chromosome 15 clone RP11-327C2 map 1... 42 2.2
18gb|AC154604.2| Mus musculus BAC clone RP23-348F20 from chromosom... 42 2.2
19gb|AF179283.1|AF179283 Mentha x piperita isopentenyl monophospha... 42 2.2
20emb|AL845170.5| Mouse DNA sequence from clone RP23-282A22 on chr... 42 2.2
21ref|XM_865086.1| PREDICTED: Bos taurus similar to developmental ... 40 8.6
22gb|AC147045.2| Mus musculus BAC clone RP23-100E5 from chromosome... 40 8.6
23gb|AC124532.4| Mus musculus BAC clone RP23-312P22 from chromosom... 40 8.6
24emb|CR318600.13| Zebrafish DNA sequence from clone DKEY-37F13 in... 40 8.6
25gb|AC122359.5| Mus musculus BAC clone RP23-421B1 from chromosome... 40 8.6
26gb|AC125195.4| Mus musculus BAC clone RP23-246M2 from 2, complet... 40 8.6
27gb|AC125191.4| Mus musculus BAC clone RP23-262C22 from 16, compl... 40 8.6
28gb|AC117254.3| Mus musculus BAC clone RP24-418D1 from 6, complet... 40 8.6
29emb|CR704672.1|CNS0G6OC Tetraodon nigroviridis full-length cDNA 40 8.6
30emb|CR694920.1|CNS0FZ5G Tetraodon nigroviridis full-length cDNA 40 8.6
31emb|CR689878.2|CNS0FV9E Tetraodon nigroviridis full-length cDNA 40 8.6
32emb|CR689057.1|CNS0FUML Tetraodon nigroviridis full-length cDNA 40 8.6
33ref|XM_673391.1| Plasmodium berghei strain ANKA ubiquitin carbox... 40 8.6
34emb|AL645944.11| Human DNA sequence from clone RP11-179G8 on chr... 40 8.6
35emb|AL590110.11| Human DNA sequence from clone RP11-254O21 on ch... 40 8.6
36emb|AL590311.5| Human DNA sequence from clone RP11-20F16 on chro... 40 8.6
37emb|AL365275.11| Human DNA sequence from clone RP11-351A11 on ch... 40 8.6
38emb|AL162716.9| Human DNA sequence from clone RP11-339I24 on chr... 40 8.6
39emb|Z83321.1|ATZ83321 A.thaliana 16 kb chromosome 1 DNA fragment 40 8.6
40emb|CR548612.1| Paramecium tetraurelia macronuclear largest chro... 40 8.6
41emb|AL161557.2|ATCHRIV57 Arabidopsis thaliana DNA chromosome 4, ... 40 8.6
42emb|AL033545.2|ATF7K2 Arabidopsis thaliana DNA chromosome 4, BAC... 40 8.6
43emb|BX569779.35| Zebrafish DNA sequence from clone CH211-113I9 i... 40 8.6
44emb|AL691510.11| Mouse DNA sequence from clone RP23-125C16 on ch... 40 8.6
45gb|BC050298.1| Homo sapiens cDNA clone IMAGE:5302590 40 8.6
46emb|BX000471.7| Zebrafish DNA sequence from clone DKEY-11C8 in l... 40 8.6
47gb|AC010243.7| Homo sapiens chromosome 5 clone CTC-361G14, compl... 40 8.6
48gb|AC015923.8| Homo sapiens chromosome 17, clone CTD-2301B9, com... 40 8.6
49gb|AC073588.3| Homo sapiens chromosome 10 clone RP11-96N16, comp... 40 8.6
50gb|AC091910.3| Homo sapiens chromosome 5 clone RP11-210I16, comp... 40 8.6
51gb|AC104576.5| Homo sapiens chromosome 8, clone RP11-790L1, comp... 40 8.6
52gb|AC046175.6| Homo sapiens chromosome 8, clone RP11-577O23, com... 40 8.6
53gb|AC018719.4| Homo sapiens BAC clone RP11-573N21 from Xq23, com... 40 8.6
54gb|AC018991.10| Homo sapiens, clone RP11-448E20, complete sequence 40 8.6
55gb|AC021872.22| Homo sapiens 12 BAC RP11-253F9 (Roswell Park Can... 40 8.6
56gb|AC026742.3| Homo sapiens chromosome 5 clone CTD-3103E19, comp... 40 8.6
57gb|AC015866.7|AC015866 Homo sapiens, clone RP11-59A1, complete s... 40 8.6
58gb|AC120377.25| Mus musculus chromosome 3, clone RP24-262L5, com... 40 8.6
59dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
60gb|AC105755.4| Homo sapiens BAC clone RP11-46H14 from 4, complet... 40 8.6
61gb|AC080132.6| Homo sapiens BAC clone RP11-166B20 from 4, comple... 40 8.6
62emb|BX088566.6| Zebrafish DNA sequence from clone DKEY-63E5 in l... 40 8.6
63gb|AC140168.2| Homo sapiens chromosome 5 clone RP11-774D14, comp... 40 8.6
64gb|AC009452.21| Homo sapiens chromosome 17, clone RP11-4F22, com... 40 8.6
65gb|AC138804.2| Homo sapiens chromosome 5 clone RP11-1001A11, com... 40 8.6
66gb|AC009978.3|AC009978 Genomic sequence for Arabidopsis thaliana... 40 8.6
67gb|AC093633.3| Homo sapiens BAC clone RP11-157M22 from 2, comple... 40 8.6
68dbj|AP004269.4| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
69emb|AL583809.3|CNS07EFY Human chromosome 14 DNA sequence BAC R-7... 40 8.6
70emb|AL445383.5|CNS07ECZ Human chromosome 14 DNA sequence BAC R-8... 40 8.6
71gb|AC110091.4| Mus musculus BAC clone RP24-87K15 from 9, complet... 40 8.6
72gb|AC090290.5| Mus musculus chromosome 15, clone RP23-393P12, co... 40 8.6
73gb|AC003982.1|AC003982 Homo sapiens PAC clone 166H1 from 12q, co... 40 8.6
74gb|AC005828.1|AC005828 Homo sapiens chromosome 17, clone hRPK.26... 40 8.6
75emb|AL136168.4| Human DNA sequence from clone RP3-477H17 on chro... 40 8.6
76gb|AC160979.2| Mus musculus BAC clone RP23-437B11 from chromosom... 40 8.6
77emb|AL773582.6| Mouse DNA sequence from clone RP23-174J23 on chr... 40 8.6 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 591      gcagtaatttaaatatttaatcacca 616
                |||||||| |||||||||||||||||
Sbjct: 10605781 gcagtaatataaatatttaatcacca 10605806
to top
>gb|AC137267.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0032G21, from chromosome 3, complete sequence
          Length = 187621

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 591   gcagtaatttaaatatttaatcacca 616
             |||||||| |||||||||||||||||
Sbjct: 22695 gcagtaatataaatatttaatcacca 22720
to top
>emb|AL513204.10| Human DNA sequence from clone RP11-418B8 on chromosome 10 Contains part
              of the NRG3 gene for neuregulin 3, complete sequence
          Length = 111173

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 153    cttcagtcttcattgtctgtat 174
              ||||||||||||||||||||||
Sbjct: 103157 cttcagtcttcattgtctgtat 103136
to top
>emb|AL354749.6| Human DNA sequence from clone RP11-156D10 on chromosome 10 Contains
             part of the NRG3 gene for neuregulin 3, complete sequence
          Length = 196000

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 153   cttcagtcttcattgtctgtat 174
             ||||||||||||||||||||||
Sbjct: 28880 cttcagtcttcattgtctgtat 28859
to top
>gb|DQ425094.1| Impatiens necrotic spot virus segment L, complete sequence
          Length = 8780

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 216  gaacagaaattgaaaacaaaga 237
            ||||||||||||||||||||||
Sbjct: 5504 gaacagaaattgaaaacaaaga 5483
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 591      gcagtaatttaaatatttaatcacca 616
                |||||||| |||||||||||||||||
Sbjct: 10603882 gcagtaatataaatatttaatcacca 10603907
to top
>emb|BX296551.4| Zebrafish DNA sequence from clone CH211-224L10 in linkage group 23,
             complete sequence
          Length = 180447

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 270   aatattttgacatatatgtaat 291
             ||||||||||||||||||||||
Sbjct: 63381 aatattttgacatatatgtaat 63402
to top
>emb|CR388421.11| Zebrafish DNA sequence from clone CH211-73B10 in linkage group 20,
             complete sequence
          Length = 147762

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 586   atagtgcagtaatttaaatatttaat 611
             ||||||||||| ||||||||||||||
Sbjct: 52873 atagtgcagtactttaaatatttaat 52848
to top
>gb|AC139513.10| Mus musculus chromosome 15, clone RP23-151N6, complete sequence
          Length = 238980

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 215   tgaacagaaattgaaaacaaa 235
             |||||||||||||||||||||
Sbjct: 67735 tgaacagaaattgaaaacaaa 67715
to top
>gb|AC117784.13| Mus musculus chromosome 15, clone RP24-545F24, complete sequence
          Length = 190734

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 215    tgaacagaaattgaaaacaaa 235
              |||||||||||||||||||||
Sbjct: 189748 tgaacagaaattgaaaacaaa 189728
to top
>gb|AC125196.4| Mus musculus BAC clone RP23-248M23 from chromosome 19, complete
             sequence
          Length = 196591

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 438   aactgacaggaaatagtaatatgat 462
             ||||||||| |||||||||||||||
Sbjct: 98368 aactgacagaaaatagtaatatgat 98344
to top
>emb|AJ249324.1|MXP249324 Mentha x piperita mRNA for isopentenyl monophosphate kinase (ipk
           gene)
          Length = 1481

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 144 cgcaaaaagcttcagtcttca 164
           |||||||||||||||||||||
Sbjct: 141 cgcaaaaagcttcagtcttca 161
to top
>gb|AC090691.16| Homo sapiens chromosome 8, clone RP11-338B22, complete sequence
          Length = 180766

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 346   aacaagtaaacatagaattgc 366
             |||||||||||||||||||||
Sbjct: 96776 aacaagtaaacatagaattgc 96796
to top
>emb|CR381644.8| Zebrafish DNA sequence from clone CH211-80A15 in linkage group 8,
             complete sequence
          Length = 171750

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 100   acatctttttgcttcatcatc 120
             |||||||||||||||||||||
Sbjct: 91307 acatctttttgcttcatcatc 91327
to top
>gb|AC036214.9| Homo sapiens chromosome 8, clone RP11-26J3, complete sequence
          Length = 160545

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 86    tatagagaaagctgacatctt 106
             |||||||||||||||||||||
Sbjct: 30592 tatagagaaagctgacatctt 30572
to top
>gb|AC018952.9| Homo sapiens chromosome 8, clone RP11-498N9, complete sequence
          Length = 180535

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 86     tatagagaaagctgacatctt 106
              |||||||||||||||||||||
Sbjct: 102301 tatagagaaagctgacatctt 102321
to top
>gb|AC018902.8| Homo sapiens chromosome 15 clone RP11-327C2 map 15Q21.2, complete
              sequence
          Length = 157226

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 415    ctgaacttacaacagtaaaca 435
              |||||||||||||||||||||
Sbjct: 120265 ctgaacttacaacagtaaaca 120285
to top
>gb|AC154604.2| Mus musculus BAC clone RP23-348F20 from chromosome 17, complete
             sequence
          Length = 198374

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 200   ttatgtgcaaatatatgaacagaaattga 228
             |||||||||| |||| |||||||||||||
Sbjct: 93231 ttatgtgcaagtataagaacagaaattga 93259
to top
>gb|AF179283.1|AF179283 Mentha x piperita isopentenyl monophosphate kinase (IPK) mRNA,
           complete cds
          Length = 1481

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 144 cgcaaaaagcttcagtcttca 164
           |||||||||||||||||||||
Sbjct: 141 cgcaaaaagcttcagtcttca 161
to top
>emb|AL845170.5| Mouse DNA sequence from clone RP23-282A22 on chromosome 2, complete
             sequence
          Length = 183985

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 346   aacaagtaaacatagaattgctata 370
             |||||||||||| ||||||||||||
Sbjct: 27608 aacaagtaaacacagaattgctata 27584
to top
>ref|XM_865086.1| PREDICTED: Bos taurus similar to developmental pluripotency
           associated 2 (LOC613891), mRNA
          Length = 2370

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 490 gaaaacaataaaacttgacc 509
           ||||||||||||||||||||
Sbjct: 456 gaaaacaataaaacttgacc 475
to top
>gb|AC147045.2| Mus musculus BAC clone RP23-100E5 from chromosome 16, complete sequence
          Length = 191975

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 224    attgaaaacaaagaccttat 243
              ||||||||||||||||||||
Sbjct: 178257 attgaaaacaaagaccttat 178276
to top
>gb|AC124532.4| Mus musculus BAC clone RP23-312P22 from chromosome 15, complete
             sequence
          Length = 218337

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 204   gtgcaaatatatgaacagaa 223
             ||||||||||||||||||||
Sbjct: 13113 gtgcaaatatatgaacagaa 13132
to top
>emb|CR318600.13| Zebrafish DNA sequence from clone DKEY-37F13 in linkage group 7, complete
              sequence
          Length = 257374

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 204    gtgcaaatatatgaacagaa 223
              ||||||||||||||||||||
Sbjct: 160405 gtgcaaatatatgaacagaa 160424
to top
>gb|AC122359.5| Mus musculus BAC clone RP23-421B1 from chromosome 6, complete sequence
          Length = 194338

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 215    tgaacagaaattgaaaacaa 234
              ||||||||||||||||||||
Sbjct: 193378 tgaacagaaattgaaaacaa 193359
to top
>gb|AC125195.4| Mus musculus BAC clone RP23-246M2 from 2, complete sequence
          Length = 195041

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 217  aacagaaattgaaaacaaag 236
            ||||||||||||||||||||
Sbjct: 9681 aacagaaattgaaaacaaag 9700
to top
>gb|AC125191.4| Mus musculus BAC clone RP23-262C22 from 16, complete sequence
          Length = 196580

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 224    attgaaaacaaagaccttat 243
              ||||||||||||||||||||
Sbjct: 128057 attgaaaacaaagaccttat 128038
to top
>gb|AC117254.3| Mus musculus BAC clone RP24-418D1 from 6, complete sequence
          Length = 172656

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 215   tgaacagaaattgaaaacaa 234
             ||||||||||||||||||||
Sbjct: 14270 tgaacagaaattgaaaacaa 14251
to top
>emb|CR704672.1|CNS0G6OC Tetraodon nigroviridis full-length cDNA
          Length = 1194

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 83   aattatagagaaagctgaca 102
            ||||||||||||||||||||
Sbjct: 1161 aattatagagaaagctgaca 1142
to top
>emb|CR694920.1|CNS0FZ5G Tetraodon nigroviridis full-length cDNA
          Length = 1244

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 83   aattatagagaaagctgaca 102
            ||||||||||||||||||||
Sbjct: 1207 aattatagagaaagctgaca 1188
to top
>emb|CR689878.2|CNS0FV9E Tetraodon nigroviridis full-length cDNA
          Length = 1214

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 83   aattatagagaaagctgaca 102
            ||||||||||||||||||||
Sbjct: 1190 aattatagagaaagctgaca 1171
to top
>emb|CR689057.1|CNS0FUML Tetraodon nigroviridis full-length cDNA
          Length = 1233

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 83   aattatagagaaagctgaca 102
            ||||||||||||||||||||
Sbjct: 1204 aattatagagaaagctgaca 1185
to top
>ref|XM_673391.1| Plasmodium berghei strain ANKA ubiquitin carboxyl-terminal hydrolase
            (PB001171.00.0) partial mRNA
          Length = 5517

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 268  aaaatattttgacatatatg 287
            ||||||||||||||||||||
Sbjct: 1746 aaaatattttgacatatatg 1765
to top
>emb|AL645944.11| Human DNA sequence from clone RP11-179G8 on chromosome 1, complete
             sequence
          Length = 191247

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 352   taaacatagaattgctatat 371
             ||||||||||||||||||||
Sbjct: 32914 taaacatagaattgctatat 32895
to top
>emb|AL590110.11| Human DNA sequence from clone RP11-254O21 on chromosome 1 Contains the
             3' end of a novel gene, complete sequence
          Length = 128843

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 217   aacagaaattgaaaacaaag 236
             ||||||||||||||||||||
Sbjct: 22119 aacagaaattgaaaacaaag 22138
to top
>emb|AL590311.5| Human DNA sequence from clone RP11-20F16 on chromosome 9 Contains the
             5' end of the GDA gene for guanine deaminase and a CpG
             island, complete sequence
          Length = 131933

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 592   cagtaatttaaatatttaat 611
             ||||||||||||||||||||
Sbjct: 89780 cagtaatttaaatatttaat 89761
to top
>emb|AL365275.11| Human DNA sequence from clone RP11-351A11 on chromosome 6 Contains part
             of a novel gene containing FLJ13942, complete sequence
          Length = 69552

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 166   tgtctgtatttacaaggaaa 185
             ||||||||||||||||||||
Sbjct: 32283 tgtctgtatttacaaggaaa 32264
to top
>emb|AL162716.9| Human DNA sequence from clone RP11-339I24 on chromosome 13 Contains a
             meningioma expressed antigen 6 (coiled-coil proline-rich)
             (MGEA6) pseudogene, complete sequence
          Length = 122916

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 269   aaatattttgacatatatgtaatc 292
             ||||||||| ||||||||||||||
Sbjct: 80757 aaatatttttacatatatgtaatc 80734
to top
>emb|Z83321.1|ATZ83321 A.thaliana 16 kb chromosome 1 DNA fragment
          Length = 16202

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 72    aaacttcactaaattataga 91
             ||||||||||||||||||||
Sbjct: 10897 aaacttcactaaattataga 10878
to top
>emb|CR548612.1| Paramecium tetraurelia macronuclear largest chromosome, complete sequence
          Length = 984602

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 209    aatatatgaacagaaattga 228
              ||||||||||||||||||||
Sbjct: 438863 aatatatgaacagaaattga 438844
to top
>emb|AL161557.2|ATCHRIV57 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 57
          Length = 199577

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 593    agtaatttaaatatttaatc 612
              ||||||||||||||||||||
Sbjct: 122544 agtaatttaaatatttaatc 122563
to top
>emb|AL033545.2|ATF7K2 Arabidopsis thaliana DNA chromosome 4, BAC clone F7K2 (ESSA project)
          Length = 106702

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 593   agtaatttaaatatttaatc 612
             ||||||||||||||||||||
Sbjct: 73736 agtaatttaaatatttaatc 73755
to top
>emb|BX569779.35| Zebrafish DNA sequence from clone CH211-113I9 in linkage group 11,
              complete sequence
          Length = 182464

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 591    gcagtaatttaaatatttaatcac 614
              |||| |||||||||||||||||||
Sbjct: 136079 gcaggaatttaaatatttaatcac 136056
to top
>emb|AL691510.11| Mouse DNA sequence from clone RP23-125C16 on chromosome 11 Contains a
             ribosomal protein S6 (Rps6) pseudogene, complete sequence
          Length = 116174

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 487   acagaaaacaataaaacttg 506
             ||||||||||||||||||||
Sbjct: 75572 acagaaaacaataaaacttg 75553
to top
>gb|BC050298.1| Homo sapiens cDNA clone IMAGE:5302590
          Length = 2884

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 98   tgacatctttttgcttcatc 117
            ||||||||||||||||||||
Sbjct: 1481 tgacatctttttgcttcatc 1500
to top
>emb|BX000471.7| Zebrafish DNA sequence from clone DKEY-11C8 in linkage group 20 Contains
              the gene for a novel protein similar to human transmembrane
              protein SHREW1 (SHREW1) and three CpG islands, complete
              sequence
          Length = 227892

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 147    aaaaagcttcagtcttcatt 166
              ||||||||||||||||||||
Sbjct: 216624 aaaaagcttcagtcttcatt 216605
to top
>gb|AC010243.7| Homo sapiens chromosome 5 clone CTC-361G14, complete sequence
          Length = 178858

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 476   aacagcaactgacagaaaacaata 499
             ||||||||||||| ||||||||||
Sbjct: 90326 aacagcaactgactgaaaacaata 90303
to top
>gb|AC015923.8| Homo sapiens chromosome 17, clone CTD-2301B9, complete sequence
          Length = 109774

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 352  taaacatagaattgctatat 371
            ||||||||||||||||||||
Sbjct: 2992 taaacatagaattgctatat 2973
to top
>gb|AC073588.3| Homo sapiens chromosome 10 clone RP11-96N16, complete sequence
          Length = 166120

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 389    tgcttttggtgggtgtgctg 408
              ||||||||||||||||||||
Sbjct: 108580 tgcttttggtgggtgtgctg 108561
to top
>gb|AC091910.3| Homo sapiens chromosome 5 clone RP11-210I16, complete sequence
          Length = 169490

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 222   aaattgaaaacaaagacctt 241
             ||||||||||||||||||||
Sbjct: 50622 aaattgaaaacaaagacctt 50603
to top
>gb|AC104576.5| Homo sapiens chromosome 8, clone RP11-790L1, complete sequence
          Length = 174399

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 352    taaacatagaattgctatat 371
              ||||||||||||||||||||
Sbjct: 141683 taaacatagaattgctatat 141702
to top
>gb|AC046175.6| Homo sapiens chromosome 8, clone RP11-577O23, complete sequence
          Length = 194972

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 86     tatagagaaagctgacatct 105
              ||||||||||||||||||||
Sbjct: 133437 tatagagaaagctgacatct 133418
to top
>gb|AC018719.4| Homo sapiens BAC clone RP11-573N21 from Xq23, complete sequence
          Length = 168210

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 352    taaacatagaattgctatat 371
              ||||||||||||||||||||
Sbjct: 123884 taaacatagaattgctatat 123903
to top
>gb|AC018991.10| Homo sapiens, clone RP11-448E20, complete sequence
          Length = 174049

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 86    tatagagaaagctgacatct 105
             ||||||||||||||||||||
Sbjct: 86395 tatagagaaagctgacatct 86376
to top
>gb|AC021872.22| Homo sapiens 12 BAC RP11-253F9 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 164020

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 352    taaacatagaattgctatat 371
              ||||||||||||||||||||
Sbjct: 116147 taaacatagaattgctatat 116166
to top
>gb|AC026742.3| Homo sapiens chromosome 5 clone CTD-3103E19, complete sequence
          Length = 149710

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 388    atgcttttggtgggtgtgct 407
              ||||||||||||||||||||
Sbjct: 147110 atgcttttggtgggtgtgct 147091
to top
>gb|AC015866.7|AC015866 Homo sapiens, clone RP11-59A1, complete sequence
          Length = 150564

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 86    tatagagaaagctgacatct 105
             ||||||||||||||||||||
Sbjct: 47413 tatagagaaagctgacatct 47394
to top
>gb|AC120377.25| Mus musculus chromosome 3, clone RP24-262L5, complete sequence
          Length = 158004

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 182   gaaatgttacaagagtaatt 201
             ||||||||||||||||||||
Sbjct: 66928 gaaatgttacaagagtaatt 66909
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 189      tacaagagtaattatgtgcaaatatatg 216
                |||||||| ||||||||||| |||||||
Sbjct: 19706816 tacaagaggaattatgtgcatatatatg 19706843
to top
>gb|AC105755.4| Homo sapiens BAC clone RP11-46H14 from 4, complete sequence
          Length = 145673

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 98     tgacatctttttgcttcatc 117
              ||||||||||||||||||||
Sbjct: 102198 tgacatctttttgcttcatc 102217
to top
>gb|AC080132.6| Homo sapiens BAC clone RP11-166B20 from 4, complete sequence
          Length = 114320

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 58    gcgattacatttcaaaactt 77
             ||||||||||||||||||||
Sbjct: 75921 gcgattacatttcaaaactt 75902
to top
>emb|BX088566.6| Zebrafish DNA sequence from clone DKEY-63E5 in linkage group 6, complete
              sequence
          Length = 195778

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 236    gaccttattggaaatgaata 255
              ||||||||||||||||||||
Sbjct: 151680 gaccttattggaaatgaata 151661
to top
>gb|AC140168.2| Homo sapiens chromosome 5 clone RP11-774D14, complete sequence
          Length = 191108

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 222    aaattgaaaacaaagacctt 241
              ||||||||||||||||||||
Sbjct: 158630 aaattgaaaacaaagacctt 158611
to top
>gb|AC009452.21| Homo sapiens chromosome 17, clone RP11-4F22, complete sequence
          Length = 176069

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 498    taaaacttgaccagttctccatgt 521
              ||||||||||||||| ||||||||
Sbjct: 115381 taaaacttgaccagtcctccatgt 115358
to top
>gb|AC138804.2| Homo sapiens chromosome 5 clone RP11-1001A11, complete sequence
          Length = 183297

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 222    aaattgaaaacaaagacctt 241
              ||||||||||||||||||||
Sbjct: 106690 aaattgaaaacaaagacctt 106671
to top
>gb|AC009978.3|AC009978 Genomic sequence for Arabidopsis thaliana BAC T23E18 from chromosome
            I, complete sequence
          Length = 97554

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 72   aaacttcactaaattataga 91
            ||||||||||||||||||||
Sbjct: 8403 aaacttcactaaattataga 8422
to top
>gb|AC093633.3| Homo sapiens BAC clone RP11-157M22 from 2, complete sequence
          Length = 173066

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 388    atgcttttggtgggtgtgct 407
              ||||||||||||||||||||
Sbjct: 157066 atgcttttggtgggtgtgct 157047
to top
>dbj|AP004269.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0048D08
          Length = 145772

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 189   tacaagagtaattatgtgcaaatatatg 216
             |||||||| ||||||||||| |||||||
Sbjct: 38822 tacaagaggaattatgtgcatatatatg 38849
to top
>emb|AL583809.3|CNS07EFY Human chromosome 14 DNA sequence BAC R-736L22 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 171699

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 203   tgtgcaaatatatgaacaga 222
             ||||||||||||||||||||
Sbjct: 17692 tgtgcaaatatatgaacaga 17673
to top
>emb|AL445383.5|CNS07ECZ Human chromosome 14 DNA sequence BAC R-88E18 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 172914

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 203    tgtgcaaatatatgaacaga 222
              ||||||||||||||||||||
Sbjct: 119109 tgtgcaaatatatgaacaga 119090
to top
>gb|AC110091.4| Mus musculus BAC clone RP24-87K15 from 9, complete sequence
          Length = 222792

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 314    agagtggttagtggttggct 333
              ||||||||||||||||||||
Sbjct: 193177 agagtggttagtggttggct 193158
to top
>gb|AC090290.5| Mus musculus chromosome 15, clone RP23-393P12, complete sequence
          Length = 201650

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 204    gtgcaaatatatgaacagaa 223
              ||||||||||||||||||||
Sbjct: 115985 gtgcaaatatatgaacagaa 115966
to top
>gb|AC003982.1|AC003982 Homo sapiens PAC clone 166H1 from 12q, complete sequence
          Length = 122302

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 218  acagaaattgaaaacaaaga 237
            ||||||||||||||||||||
Sbjct: 3127 acagaaattgaaaacaaaga 3146
to top
>gb|AC005828.1|AC005828 Homo sapiens chromosome 17, clone hRPK.269_G_24, complete sequence
          Length = 163685

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 352  taaacatagaattgctatat 371
            ||||||||||||||||||||
Sbjct: 1123 taaacatagaattgctatat 1142
to top
>emb|AL136168.4| Human DNA sequence from clone RP3-477H17 on chromosome X, complete
             sequence
          Length = 46851

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 352   taaacatagaattgctatat 371
             ||||||||||||||||||||
Sbjct: 45121 taaacatagaattgctatat 45140
to top
>gb|AC160979.2| Mus musculus BAC clone RP23-437B11 from chromosome 15, complete
             sequence
          Length = 216014

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 204   gtgcaaatatatgaacagaa 223
             ||||||||||||||||||||
Sbjct: 71971 gtgcaaatatatgaacagaa 71952
to top
>emb|AL773582.6| Mouse DNA sequence from clone RP23-174J23 on chromosome 2, complete
             sequence
          Length = 206309

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 217   aacagaaattgaaaacaaag 236
             ||||||||||||||||||||
Sbjct: 87029 aacagaaattgaaaacaaag 87048


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8,022,362
Number of Sequences: 3902068
Number of extensions: 8022362
Number of successful extensions: 200310
Number of sequences better than 10.0: 77
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 199888
Number of HSP's gapped (non-prelim): 422
length of query: 634
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 611
effective length of database: 17,143,297,704
effective search space: 10474554897144
effective search space used: 10474554897144
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top