ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal6d03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1INX14_CAEEL (O62136) Innexin-14 32 2.0
2EXG1_YEAST (P23776) Glucan 1,3-beta-glucosidase I/II precursor (... 31 3.5
3DNAA_CORDI (Q6NKL7) Chromosomal replication initiator protein dnaA 30 5.9
4IRPA_SYNP7 (P12608) Iron-regulated protein A precursor 30 5.9

>INX14_CAEEL (O62136) Innexin-14|
          Length = 434

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 165 NYVQLYERTAYTVDKLGVYFHDHLFFIMAQKLGHSS 272
           N  + +E+T   VD++  Y HDH  F  A K+G+ S
Sbjct: 147 NSEKTFEKTKEKVDRIVNYMHDHFKFRRAHKMGYLS 182



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>EXG1_YEAST (P23776) Glucan 1,3-beta-glucosidase I/II precursor (EC 3.2.1.58)|
           (Exo-1,3-beta-glucanase I/II) (Soluble cell wall protein
           6)
          Length = 448

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
 Frame = -3

Query: 588 DNGITIK---LCTF--EDADRMTVRTEDKTFYTEDDFRDFLSRRGWTLLREYSGYRVADT 424
           D GI +     C +  +D  +  +++   TFY E DF +  S +G+ L+R   GY    T
Sbjct: 83  DEGIPVDEYHFCQYLGKDLAKSRLQSHWSTFYQEQDFANIAS-QGFNLVRIPIGYWAFQT 141

Query: 423 LDD 415
           LDD
Sbjct: 142 LDD 144



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>DNAA_CORDI (Q6NKL7) Chromosomal replication initiator protein dnaA|
          Length = 552

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = -2

Query: 400 DLPGDALTCRLILHHLPDNGHLYLGYVGFEPKFVLAHCWQENEL--EWPSFWA 248
           DLP D     ++ HH+P++ H      G+ P +         E   E+PS WA
Sbjct: 96  DLPHDVPEQHIVQHHVPEHPHYSPVSQGYPPHYAPEQSEYNTEYSDEYPSGWA 148



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>IRPA_SYNP7 (P12608) Iron-regulated protein A precursor|
          Length = 356

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 23/74 (31%), Positives = 34/74 (45%)
 Frame = +1

Query: 241 LSWPKNLAILVRFLANNGQARTWAQNQHTPDIDAHCRANDAGSIDK*AHPLVNRARTKIV 420
           LS  ++L IL   L    Q       Q +           AGS D  A+P +N A T+IV
Sbjct: 166 LSDRQHLVILATDLTKQAQGLVTRWQQASDQPAYRSVLLSAGSTDS-AYPTLNAAGTEIV 224

Query: 421 QSISDSVATILPEE 462
           Q + DS++ +  E+
Sbjct: 225 QGLVDSLSEVASEK 238


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,028,242
Number of Sequences: 219361
Number of extensions: 2093164
Number of successful extensions: 4522
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4522
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5824436538
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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