Clone Information

BLAST Search Result

Clone Name	rbaal5n21
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RNF4_RAT (O88846) RING finger protein 4 (SNURF)	44	2e-04
2	RNF4_MOUSE (Q9QZS2) RING finger protein 4	44	2e-04
3	RNF4_HUMAN (P78317) RING finger protein 4	44	2e-04
4	BRE1_CANAL (Q5A4X0) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-)	35	0.059
5	AMFR2_HUMAN (Q9UKV5) Autocrine motility factor receptor, isoform...	35	0.059
6	RAD18_KLULA (Q6CTZ8) Postreplication repair ubiquitin-protein li...	35	0.059
7	BRE1_YEAST (Q07457) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-) (...	35	0.059
8	BRE1_CANGA (Q6FWF3) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-)	35	0.077
9	PEX10_PICAN (Q00940) Peroxisome assembly protein 10 (Peroxin-10)...	35	0.077
10	RN141_CHICK (Q5ZM74) RING finger protein 141	35	0.077
11	YB1B_SCHPO (P87176) Hypothetical RING finger protein C3D6.11c in...	34	0.13
12	AMFR_MOUSE (Q9R049) Autocrine motility factor receptor (EC 6.3.2...	34	0.13
13	BRE1A_CHICK (Q5ZLS3) Ubiquitin-protein ligase BRE1A (EC 6.3.2.-)...	34	0.17
14	BRE1A_HUMAN (Q5VTR2) Ubiquitin-protein ligase BRE1A (EC 6.3.2.-)...	34	0.17
15	BRE1_CAEBR (Q60YN5) Ubiquitin-protein ligase bre-1 (EC 6.3.2.-) ...	34	0.17
16	BRE1A_MOUSE (Q5DTM8) Ubiquitin-protein ligase BRE1A (EC 6.3.2.-)...	34	0.17
17	RFWD2_HUMAN (Q8NHY2) Ring finger and WD repeat domain protein 2 ...	34	0.17
18	RN141_BRARE (Q6IV56) RING finger protein 141	34	0.17
19	BRE1_CAEEL (P34537) Ubiquitin-protein ligase bre-1 (EC 6.3.2.-) ...	34	0.17
20	RFWD2_MOUSE (Q9R1A8) Ring finger and WD repeat domain protein 2 ...	34	0.17
21	BRE1_KLULA (Q6CWM4) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-)	33	0.22
22	RAD18_CANGA (Q6FPI4) Postreplication repair ubiquitin-protein li...	33	0.22
23	RN141_RAT (Q6IV57) RING finger protein 141	33	0.22
24	RN141_PONPY (Q5R7K8) RING finger protein 141	33	0.22
25	RN141_MOUSE (Q99MB7) RING finger protein 141 (Zinc finger protei...	33	0.22
26	RN141_HUMAN (Q8WVD5) RING finger protein 141 (Zinc finger protei...	33	0.22
27	PEX10_MACFA (Q8HXW8) Peroxisome assembly protein 10 (Peroxin-10)...	33	0.22
28	PEX10_HUMAN (O60683) Peroxisome assembly protein 10 (Peroxin-10)...	33	0.22
29	BRE1B_RAT (Q8CJB9) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-) (...	33	0.29
30	SM3L1_ARATH (Q9FF61) Putative SWI/SNF-related matrix-associated ...	33	0.29
31	ATL5L_ARATH (Q9FIR0) Putative RING-H2 finger protein ATL5L	33	0.29
32	BRE1B_MOUSE (Q3U319) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-)...	33	0.29
33	RN125_MOUSE (Q9D9R0) RING finger protein 125 (EC 6.3.2.-)	33	0.38
34	RING1_MACMU (Q8WMN5) Polycomb complex protein RING1 (RING finger...	33	0.38
35	RING1_DROME (Q9VB08) Ubiquitin ligase protein RING1 (EC 6.3.2.-)...	33	0.38
36	RING1_RAT (Q6MGB6) Polycomb complex protein RING1 (RING finger p...	33	0.38
37	RING1_MOUSE (O35730) Polycomb complex protein RING1 (RING finger...	33	0.38
38	RING1_HUMAN (Q06587) Polycomb complex protein RING1 (RING finger...	33	0.38
39	RING1_CANFA (Q5TJF3) Ubiquitin ligase protein RING1 (EC 6.3.2.-)...	33	0.38
40	BRE1_ASHGO (Q757D9) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-)	33	0.38
41	RNG2B_XENLA (Q7ZWM8) Ubiquitin ligase protein RING2-B (EC 6.3.2....	33	0.38
42	PEX12_DROME (Q9VPT5) Putative peroxisome assembly protein 12 (Pe...	33	0.38
43	RAD18_EMENI (Q02398) Postreplication repair ubiquitin-protein li...	33	0.38
44	RNG2A_XENLA (Q66J69) Ubiquitin ligase protein RING2-A (EC 6.3.2....	33	0.38
45	COP1_PEA (P93471) Ubiquitin ligase protein COP1 (EC 6.3.2.-) (Co...	33	0.38
46	BRE1B_PONPY (Q5RAU7) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-)...	33	0.38
47	BRE1B_MACFA (Q4R7K7) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-)...	33	0.38
48	BRE1B_HUMAN (O75150) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-)...	33	0.38
49	PEX10_ARATH (Q9SYU4) Peroxisome assembly protein 10 (Peroxin-10)...	32	0.50
50	CM007_PONPY (Q5RD97) Protein C13orf7 homolog	32	0.50
51	CM007_HUMAN (Q5W0B1) Protein C13orf7	32	0.50
52	BRE1_DEBHA (Q6BWW6) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-)	32	0.50
53	BRE1_GIBZE (Q4I7N9) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-)	32	0.65
54	RING2_PONPY (Q5R9J5) Ubiquitin ligase protein RING2 (EC 6.3.2.-)...	32	0.65
55	RING2_MOUSE (Q9CQJ4) Ubiquitin ligase protein RING2 (EC 6.3.2.-)...	32	0.65
56	RING2_HUMAN (Q99496) Ubiquitin ligase protein RING2 (EC 6.3.2.-)...	32	0.65
57	RING2_BRARE (Q803I4) Ubiquitin ligase protein RING2 (EC 6.3.2.-)...	32	0.65
58	RN125_MACFA (Q95KF1) RING finger protein 125 (EC 6.3.2.-)	32	0.65
59	RN125_HUMAN (Q96EQ8) RING finger protein 125 (EC 6.3.2.-) (T-cel...	32	0.65
60	RING2_RAT (Q4KLY4) Ubiquitin ligase protein RING2 (EC 6.3.2.-) (...	32	0.65
61	YNN1_CAEEL (Q03605) Hypothetical RING finger protein T02C1.1 in ...	32	0.65
62	RAD18_DEBHA (Q6BLM3) Postreplication repair ubiquitin-protein li...	32	0.85
63	BRE1_YARLI (Q6CF78) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-)	32	0.85
64	CM007_MOUSE (Q8K2Y0) Protein C13orf7 homolog	31	1.1
65	DTX3_MOUSE (Q80V91) Protein deltex-3 (Deltex-3) (Deltex3) (mDTX3)	31	1.1
66	DTX3_HUMAN (Q8N9I9) Protein deltex-3 (Deltex-3) (Deltex3)	31	1.1
67	BRE1_DROME (Q9VRP9) Ubiquitin-protein ligase Bre1 (EC 6.3.2.-) (...	31	1.1
68	COP1_ARATH (P43254) Ubiquitin-protein ligase COP1 (EC 6.3.2.-) (...	31	1.5
69	LNX2_MOUSE (Q91XL2) Ligand of Numb-protein X 2 (Numb-binding pro...	31	1.5
70	RAD18_ASPFU (Q4WZJ6) Postreplication repair ubiquitin-protein li...	31	1.5
71	PEX10_SCHPO (Q9UUF0) Peroxisome assembly protein 10 (Peroxin-10)...	31	1.5
72	RAD18_NEUCR (P33288) Postreplication repair ubiquitin-protein li...	31	1.5
73	ATL4I_ARATH (O49691) Putative RING-H2 finger protein ATL4I	31	1.5
74	BRE1_SCHPO (O74563) Ubiquitin-protein ligase bre1 (EC 6.3.2.-)	30	1.9
75	RN146_RAT (Q5XIK5) RING finger protein 146	30	1.9
76	RAD18_ASHGO (Q75EN0) Postreplication repair ubiquitin-protein li...	30	1.9
77	RN146_MOUSE (Q9CZW6) RING finger protein 146	30	1.9
78	RN146_HUMAN (Q9NTX7) RING finger protein 146 (Dactylidin)	30	1.9
79	LNX2_HUMAN (Q8N448) Ligand of Numb-protein X 2 (Numb-binding pro...	30	1.9
80	RN146_PONPY (Q5REL3) RING finger protein 146	30	1.9
81	SAN1_YEAST (P22470) Protein SAN1	30	2.5
82	RO52_HUMAN (P19474) 52 kDa Ro protein (Sjoegren syndrome type A ...	30	2.5
83	PEX10_YEAST (Q05568) Peroxisome assembly protein 10 (Peroxin-10)...	30	3.2
84	RAD5_CANGA (Q6FY76) DNA repair protein RAD5 (EC 3.6.1.-)	30	3.2
85	TRI12_MOUSE (Q99PQ1) Tripartite motif protein 12	30	3.2
86	PEX12_CAEEL (Q19189) Putative peroxisome assembly protein 12 (Pe...	30	3.2
87	BRE1_NEUCR (Q7S304) Ubiquitin-protein ligase bre-1 (EC 6.3.2.-)	30	3.2
88	TRI40_RAT (Q6MFY8) Tripartite motif protein 40 (RING finger prot...	29	4.2
89	RO52_MOUSE (Q62191) 52 kDa Ro protein (Sjoegren syndrome type A ...	29	4.2
90	PEX12_ARATH (Q9M841) Putative peroxisome assembly protein 12 (Pe...	29	4.2
91	TRI35_MOUSE (Q8C006) Tripartite motif protein 35 (Macrophage-der...	29	4.2
92	RN126_MOUSE (Q91YL2) RING finger protein 126	29	4.2
93	RAD5_YEAST (P32849) DNA repair protein RAD5 (EC 3.6.1.-) (Radiat...	29	4.2
94	CWC24_CANGA (Q6FXX1) Pre-mRNA-splicing factor CWC24	29	5.5
95	SMRA3_HUMAN (Q14527) SWI/SNF-related matrix-associated actin-dep...	29	5.5
96	ATL2A_ARATH (O22755) RING-H2 finger protein ATL2A (RING-H2 zinc ...	29	5.5
97	ICP0_HHV11 (P08393) Trans-acting transcriptional protein ICP0 (I...	29	5.5
98	RN113_CAEEL (O17917) Putative RING finger protein 113 homolog	29	5.5
99	RAD18_YEAST (P10862) Postreplication repair ubiquitin-protein li...	29	5.5
100	SMRA3_RABIT (Q95216) SWI/SNF-related matrix-associated actin-dep...	29	5.5
101	ATL3I_ARATH (Q7X843) RING-H2 finger protein ATL3I (YGHL1-C3HC4 R...	29	5.5
102	TRAF7_MOUSE (Q922B6) E3 ubiquitin protein ligase TRAF7 (EC 6.3.2...	28	7.2
103	ATL1F_ARATH (Q9LQM2) Putative RING-H2 finger protein ATL1F precu...	28	7.2
104	TRI22_HUMAN (Q8IYM9) Tripartite motif protein 22 (RING finger pr...	28	7.2
105	RN126_HUMAN (Q9BV68) RING finger protein 126	28	7.2
106	DG17_DICDI (P11467) Protein DG17	28	7.2
107	RAD18_CANAL (Q5A4N5) Postreplication repair ubiquitin-protein li...	28	7.2
108	SINA4_ARATH (Q9STN8) Ubiquitin ligase SINAT4 (EC 6.3.2.-) (Seven...	28	9.4
109	DP2L_METJA (Q59024) DNA polymerase II large subunit (EC 2.7.7.7)...	28	9.4

>RNF4_RAT (O88846) RING finger protein 4 (SNURF)|
          Length = 194

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 13/36 (36%), Positives = 24/36 (66%)
 Frame = -2

Query: 421 GHIFCQKCIKASIQXXKKCPTCRRKLTISNFXRVYL 314
           GH+FC +C++ S++    CPTCR+K+    +  +Y+
Sbjct: 159 GHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 194

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>RNF4_MOUSE (Q9QZS2) RING finger protein 4|
          Length = 194

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 13/36 (36%), Positives = 24/36 (66%)
 Frame = -2

Query: 421 GHIFCQKCIKASIQXXKKCPTCRRKLTISNFXRVYL 314
           GH+FC +C++ S++    CPTCR+K+    +  +Y+
Sbjct: 159 GHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 194

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>RNF4_HUMAN (P78317) RING finger protein 4|
          Length = 190

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 13/36 (36%), Positives = 24/36 (66%)
 Frame = -2

Query: 421 GHIFCQKCIKASIQXXKKCPTCRRKLTISNFXRVYL 314
           GH+FC +C++ S++    CPTCR+K+    +  +Y+
Sbjct: 155 GHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 190

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>BRE1_CANAL (Q5A4X0) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-)|
          Length = 681

 Score = 35.4 bits (80), Expect = 0.059
 Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -2

Query: 430 TIXGHIFCQKCIKASIQX-XKKCPTCRRKLTISNFXRVYL 314
           T+ GH+FC KC +  +    ++CP+C R  + ++   ++L
Sbjct: 642 TVCGHVFCSKCTQERLAARLRRCPSCNRGFSANDLLSIHL 681

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>AMFR2_HUMAN (Q9UKV5) Autocrine motility factor receptor, isoform 2 (EC 6.3.2.-)|
           (AMF receptor) (gp78)
          Length = 643

 Score = 35.4 bits (80), Expect = 0.059
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 421 GHIFCQKCIKASIQXXKKCPTCRRKLTISNFXRV 320
           GH+F   C+++ ++    CPTCR  L I++  RV
Sbjct: 357 GHLFHNSCLRSWLEQDTSCPTCRMSLNIADNNRV 390

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>RAD18_KLULA (Q6CTZ8) Postreplication repair ubiquitin-protein ligase E3 RAD18|
           (EC 6.-.-.-)
          Length = 427

 Score = 35.4 bits (80), Expect = 0.059
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -2

Query: 421 GHIFCQKCIKASIQXXKKCPTCRRKLTISNFXRVYL 314
           GH FC  CI+  +Q   KCP C   LT S   + +L
Sbjct: 48  GHSFCSICIRKYLQKESKCPLCLSDLTESMLQKEFL 83

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>BRE1_YEAST (Q07457) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-) (Brefeldin|
           A-sensitivity protein 1)
          Length = 700

 Score = 35.4 bits (80), Expect = 0.059
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -2

Query: 421 GHIFCQKCIKASIQXX-KKCPTCRRKLTISNFXRVYL 314
           GH+FC+ C K  +    +KCPTC +  + ++   V+L
Sbjct: 664 GHVFCENCCKERLAARMRKCPTCNKAFSSNDLLTVHL 700

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>BRE1_CANGA (Q6FWF3) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-)|
          Length = 693

 Score = 35.0 bits (79), Expect = 0.077
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -2

Query: 421 GHIFCQKCIKASIQXX-KKCPTCRRKLTISNFXRVYL 314
           GH+FC+ C K  +    +KCPTC +  + ++   V+L
Sbjct: 657 GHVFCEDCCKERLAARMRKCPTCNKPFSSNDLLMVHL 693

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>PEX10_PICAN (Q00940) Peroxisome assembly protein 10 (Peroxin-10) (Peroxisome|
           biogenesis factor 10) (Peroxisome assembly protein PER8)
          Length = 295

 Score = 35.0 bits (79), Expect = 0.077
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -2

Query: 421 GHIFCQKCIKASIQXXKKCPTCRRKL 344
           GH+FC KC+   ++  ++CP CR K+
Sbjct: 261 GHVFCWKCVLDWVKERQECPLCRAKM 286

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>RN141_CHICK (Q5ZM74) RING finger protein 141|
          Length = 230

 Score = 35.0 bits (79), Expect = 0.077
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 418 HIFCQKCIKASIQXXKKCPTCRRKLT 341
           H FCQKCI       + CP CRR++T
Sbjct: 171 HSFCQKCIDKWSDRHRSCPVCRRQVT 196

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>YB1B_SCHPO (P87176) Hypothetical RING finger protein C3D6.11c in chromosome II|
          Length = 269

 Score = 34.3 bits (77), Expect = 0.13
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
 Frame = -2

Query: 421 GHIFCQKCIKASI---QXXKKCPTCRRKL 344
           GHIFC  CI +++      +KCP CRRK+
Sbjct: 222 GHIFCNFCILSALGTTAATQKCPVCRRKV 250

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>AMFR_MOUSE (Q9R049) Autocrine motility factor receptor (EC 6.3.2.19) (AMF|
           receptor)
          Length = 643

 Score = 34.3 bits (77), Expect = 0.13
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 421 GHIFCQKCIKASIQXXKKCPTCRRKLTISNFXR 323
           GH+F   C+++ ++    CPTCR  L I++  R
Sbjct: 357 GHLFHNSCLRSWLEQDTSCPTCRMSLNIADGSR 389

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>BRE1A_CHICK (Q5ZLS3) Ubiquitin-protein ligase BRE1A (EC 6.3.2.-) (BRE1-A) (RING|
            finger protein 20)
          Length = 984

 Score = 33.9 bits (76), Expect = 0.17
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 418  HIFCQKCIKASIQXX-KKCPTCRRKLTISNFXRVYL 314
            H+FC +C+K       +KCP C      ++F R+Y+
Sbjct: 948  HVFCFECVKTRYDTRQRKCPKCNAAFGANDFHRIYI 983

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>BRE1A_HUMAN (Q5VTR2) Ubiquitin-protein ligase BRE1A (EC 6.3.2.-) (BRE1-A) (RING|
            finger protein 20)
          Length = 975

 Score = 33.9 bits (76), Expect = 0.17
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 418  HIFCQKCIKASIQXX-KKCPTCRRKLTISNFXRVYL 314
            H+FC +C+K       +KCP C      ++F R+Y+
Sbjct: 939  HVFCFECVKTRYDTRQRKCPKCNAAFGANDFHRIYI 974

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>BRE1_CAEBR (Q60YN5) Ubiquitin-protein ligase bre-1 (EC 6.3.2.-) (RING finger|
           protein rfp-1)
          Length = 828

 Score = 33.9 bits (76), Expect = 0.17
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 418 HIFCQKCIKASIQXX-KKCPTCRRKLTISNFXRVYL 314
           H+FC+ CIK       +KCP C      ++F R+++
Sbjct: 793 HLFCETCIKTMYDTRQRKCPKCNSNFGANDFHRIFI 828

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>BRE1A_MOUSE (Q5DTM8) Ubiquitin-protein ligase BRE1A (EC 6.3.2.-) (BRE1-A) (RING|
            finger protein 20)
          Length = 973

 Score = 33.9 bits (76), Expect = 0.17
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 418  HIFCQKCIKASIQXX-KKCPTCRRKLTISNFXRVYL 314
            H+FC +C+K       +KCP C      ++F R+Y+
Sbjct: 937  HVFCFECVKTRYDTRQRKCPKCNAAFGANDFHRIYI 972

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>RFWD2_HUMAN (Q8NHY2) Ring finger and WD repeat domain protein 2 (EC 6.3.2.-)|
           (Ubiquitin-protein ligase COP1) (Constitutive
           photomorphogenesis protein 1 homolog) (hCOP1)
          Length = 731

 Score = 33.9 bits (76), Expect = 0.17
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 421 GHIFCQKCIKASIQXXKKCPTCRRKLTISNFXRVY 317
           GH FC KCI  S++   +CP C     + N   +Y
Sbjct: 152 GHSFCYKCIHQSLEDNNRCPKC--NYVVDNIDHLY 184

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>RN141_BRARE (Q6IV56) RING finger protein 141|
          Length = 222

 Score = 33.9 bits (76), Expect = 0.17
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 418 HIFCQKCIKASIQXXKKCPTCRRKLTISN 332
           H FCQKCI       + CP CR ++T +N
Sbjct: 163 HSFCQKCIDKWSGQSRNCPVCRIQVTAAN 191

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>BRE1_CAEEL (P34537) Ubiquitin-protein ligase bre-1 (EC 6.3.2.-) (RING finger|
           protein rfp-1)
          Length = 837

 Score = 33.9 bits (76), Expect = 0.17
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 418 HIFCQKCIKASIQXX-KKCPTCRRKLTISNFXRVYL 314
           H+FC+ CIK       +KCP C      ++F R+++
Sbjct: 802 HLFCETCIKTMYDTRQRKCPKCNSNFGANDFHRIFI 837

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>RFWD2_MOUSE (Q9R1A8) Ring finger and WD repeat domain protein 2 (EC 6.3.2.-)|
           (Ubiquitin-protein ligase COP1) (Constitutive
           photomorphogenesis protein 1 homolog) (mCOP1)
          Length = 733

 Score = 33.9 bits (76), Expect = 0.17
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 421 GHIFCQKCIKASIQXXKKCPTCRRKLTISNFXRVY 317
           GH FC KCI  S++   +CP C     + N   +Y
Sbjct: 154 GHSFCYKCIHQSLEDNNRCPKC--NYVVDNIDHLY 186

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>BRE1_KLULA (Q6CWM4) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-)|
          Length = 663

 Score = 33.5 bits (75), Expect = 0.22
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 421 GHIFCQKCIKASIQXX-KKCPTCRRKLTISNFXRVYL 314
           GH+FC  C K  +    +KCPTC +  + ++   ++L
Sbjct: 627 GHVFCDVCCKERLAARMRKCPTCNKPFSSNDLLSIHL 663

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>RAD18_CANGA (Q6FPI4) Postreplication repair ubiquitin-protein ligase E3 RAD18|
           (EC 6.-.-.-)
          Length = 411

 Score = 33.5 bits (75), Expect = 0.22
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -2

Query: 421 GHIFCQKCIKASIQXXKKCPTCRRKLTISNFXRVYL 314
           GH FC  CI+  +    KCP C  +L  S     YL
Sbjct: 43  GHTFCSLCIRGYLSNEPKCPLCLHELRESMLRSEYL 78

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>RN141_RAT (Q6IV57) RING finger protein 141|
          Length = 230

 Score = 33.5 bits (75), Expect = 0.22
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 418 HIFCQKCIKASIQXXKKCPTCRRKLTISN 332
           H FCQKCI       + CP CR ++T +N
Sbjct: 171 HSFCQKCIDKWSDRHRNCPICRLQMTGAN 199

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>RN141_PONPY (Q5R7K8) RING finger protein 141|
          Length = 230

 Score = 33.5 bits (75), Expect = 0.22
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 418 HIFCQKCIKASIQXXKKCPTCRRKLTISN 332
           H FCQKCI       + CP CR ++T +N
Sbjct: 171 HSFCQKCIDKWSDRHRNCPICRLQMTGAN 199

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>RN141_MOUSE (Q99MB7) RING finger protein 141 (Zinc finger protein 230)|
          Length = 230

 Score = 33.5 bits (75), Expect = 0.22
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 418 HIFCQKCIKASIQXXKKCPTCRRKLTISN 332
           H FCQKCI       + CP CR ++T +N
Sbjct: 171 HSFCQKCIDKWSDRHRNCPICRLQMTGAN 199

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>RN141_HUMAN (Q8WVD5) RING finger protein 141 (Zinc finger protein 230)|
          Length = 230

 Score = 33.5 bits (75), Expect = 0.22
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 418 HIFCQKCIKASIQXXKKCPTCRRKLTISN 332
           H FCQKCI       + CP CR ++T +N
Sbjct: 171 HSFCQKCIDKWSDRHRNCPICRLQMTGAN 199

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>PEX10_MACFA (Q8HXW8) Peroxisome assembly protein 10 (Peroxin-10) (Peroxisome|
           biogenesis factor 10)
          Length = 326

 Score = 33.5 bits (75), Expect = 0.22
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 421 GHIFCQKCIKASIQXXKKCPTCRRK 347
           GH+FC +CI A      +CP CR K
Sbjct: 289 GHLFCWECITAWCSSKAECPLCREK 313

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>PEX10_HUMAN (O60683) Peroxisome assembly protein 10 (Peroxin-10) (Peroxisome|
           biogenesis factor 10) (RING finger protein 69)
          Length = 326

 Score = 33.5 bits (75), Expect = 0.22
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 421 GHIFCQKCIKASIQXXKKCPTCRRK 347
           GH+FC +CI A      +CP CR K
Sbjct: 289 GHLFCWECITAWCSSKAECPLCREK 313

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>BRE1B_RAT (Q8CJB9) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-) (BRE1-B) (RING|
            finger protein 40) (Syntaxin-1-interacting RING finger
            protein) (Protein staring)
          Length = 1002

 Score = 33.1 bits (74), Expect = 0.29
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 418  HIFCQKCIKASIQXX-KKCPTCRRKLTISNFXRVYL 314
            H+FC +C++   +   +KCP C       +F RVY+
Sbjct: 966  HVFCFECVRGRYEARQRKCPKCNAAFGAHDFHRVYI 1001

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>SM3L1_ARATH (Q9FF61) Putative SWI/SNF-related matrix-associated actin-dependent|
           regulator of chromatin subfamily A member 3-like 1 (EC
           3.6.1.-) (SMARCA3-like protein 1)
          Length = 881

 Score = 33.1 bits (74), Expect = 0.29
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -2

Query: 418 HIFCQKCIKASIQXXKK-CPTCRRKLTISN 332
           HIFC+ CI  ++Q  K  CP CR  LT S+
Sbjct: 652 HIFCRACILQTLQRSKPLCPLCRGSLTQSD 681

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>ATL5L_ARATH (Q9FIR0) Putative RING-H2 finger protein ATL5L|
          Length = 289

 Score = 33.1 bits (74), Expect = 0.29
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 418 HIFCQKCIKASIQXXKKCPTCRRKL 344
           H+F Q+CI   ++  K CP CRR L
Sbjct: 136 HVFHQECIDQWLESNKTCPVCRRNL 160

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>BRE1B_MOUSE (Q3U319) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-) (BRE1-B) (RING|
            finger protein 40)
          Length = 1001

 Score = 33.1 bits (74), Expect = 0.29
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 418  HIFCQKCIKASIQXX-KKCPTCRRKLTISNFXRVYL 314
            H+FC +C++   +   +KCP C       +F RVY+
Sbjct: 965  HVFCFECVRGRYEARQRKCPKCNAAFGAHDFHRVYI 1000

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>RN125_MOUSE (Q9D9R0) RING finger protein 125 (EC 6.3.2.-)|
          Length = 232

 Score = 32.7 bits (73), Expect = 0.38
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -2

Query: 421 GHIFCQKCIKASIQXXKK--CPTCRRKL 344
           GH+FC+ CI  SI+   K  CP CR  L
Sbjct: 52  GHVFCRSCIATSIKNNNKWTCPYCRAYL 79

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>RING1_MACMU (Q8WMN5) Polycomb complex protein RING1 (RING finger protein 1)|
          Length = 377

 Score = 32.7 bits (73), Expect = 0.38
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -2

Query: 418 HIFCQKCIKASIQXX-KKCPTCRRKL 344
           H FC  CI  +++   K+CPTCR+KL
Sbjct: 37  HRFCSDCIVTALRSGNKECPTCRKKL 62

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>RING1_DROME (Q9VB08) Ubiquitin ligase protein RING1 (EC 6.3.2.-) (dRING1)|
           (dRING protein) (Sex comb extra protein)
          Length = 435

 Score = 32.7 bits (73), Expect = 0.38
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -2

Query: 418 HIFCQKCIKASIQXX-KKCPTCRRKL 344
           H FC  CI  +++   K+CPTCR+KL
Sbjct: 64  HRFCSDCIVTALRSGNKECPTCRKKL 89

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>RING1_RAT (Q6MGB6) Polycomb complex protein RING1 (RING finger protein 1)|
          Length = 406

 Score = 32.7 bits (73), Expect = 0.38
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -2

Query: 418 HIFCQKCIKASIQXX-KKCPTCRRKL 344
           H FC  CI  +++   K+CPTCR+KL
Sbjct: 66  HRFCSDCIVTALRSGNKECPTCRKKL 91

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>RING1_MOUSE (O35730) Polycomb complex protein RING1 (RING finger protein 1)|
           (Transcription repressor Ring1A)
          Length = 406

 Score = 32.7 bits (73), Expect = 0.38
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -2

Query: 418 HIFCQKCIKASIQXX-KKCPTCRRKL 344
           H FC  CI  +++   K+CPTCR+KL
Sbjct: 66  HRFCSDCIVTALRSGNKECPTCRKKL 91

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>RING1_HUMAN (Q06587) Polycomb complex protein RING1 (RING finger protein 1)|
          Length = 406

 Score = 32.7 bits (73), Expect = 0.38
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -2

Query: 418 HIFCQKCIKASIQXX-KKCPTCRRKL 344
           H FC  CI  +++   K+CPTCR+KL
Sbjct: 66  HRFCSDCIVTALRSGNKECPTCRKKL 91

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>RING1_CANFA (Q5TJF3) Ubiquitin ligase protein RING1 (EC 6.3.2.-) (RING finger|
           protein 1) (RING1a)
          Length = 406

 Score = 32.7 bits (73), Expect = 0.38
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -2

Query: 418 HIFCQKCIKASIQXX-KKCPTCRRKL 344
           H FC  CI  +++   K+CPTCR+KL
Sbjct: 66  HRFCSDCIVTALRSGNKECPTCRKKL 91

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>BRE1_ASHGO (Q757D9) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-)|
          Length = 643

 Score = 32.7 bits (73), Expect = 0.38
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 421 GHIFCQKCIKASIQXX-KKCPTCRRKLTISNFXRVYL 314
           GH+FC  C K  +    +KCPTC +  + ++   V+L
Sbjct: 607 GHVFCADCCKERLAARMRKCPTCNKGFSSNDLLVVHL 643

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>RNG2B_XENLA (Q7ZWM8) Ubiquitin ligase protein RING2-B (EC 6.3.2.-) (RING finger|
           protein 2-B) (RING finger protein 1B-B) (RING1b-B)
          Length = 343

 Score = 32.7 bits (73), Expect = 0.38
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -2

Query: 418 HIFCQKCIKASIQXX-KKCPTCRRKL 344
           H FC  CI  +++   K+CPTCR+KL
Sbjct: 65  HRFCSDCIVTALRSGNKECPTCRKKL 90

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>PEX12_DROME (Q9VPT5) Putative peroxisome assembly protein 12 (Peroxin-12)|
          Length = 297

 Score = 32.7 bits (73), Expect = 0.38
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = -2

Query: 430 TIXGHIFCQKCIKASIQXXKKCPTCRRKLTISNFXRVY 317
           ++ G++FC KCI + ++    CP     +++ +  R+Y
Sbjct: 258 SVSGYVFCWKCIVSHMKEHGTCPVTHYPISLDDLVRIY 295

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>RAD18_EMENI (Q02398) Postreplication repair ubiquitin-protein ligase E3 rad18|
           (EC 6.-.-.-)
          Length = 443

 Score = 32.7 bits (73), Expect = 0.38
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 430 TIXGHIFCQKCIKASIQXXKKCPTCR 353
           T   H FC  CI+  +    KCPTCR
Sbjct: 43  TSCSHTFCSLCIRRCLSTEGKCPTCR 68

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>RNG2A_XENLA (Q66J69) Ubiquitin ligase protein RING2-A (EC 6.3.2.-) (RING finger|
           protein 2-A) (RING finger protein 1B-A) (RING1b-A)
          Length = 344

 Score = 32.7 bits (73), Expect = 0.38
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -2

Query: 418 HIFCQKCIKASIQXX-KKCPTCRRKL 344
           H FC  CI  +++   K+CPTCR+KL
Sbjct: 66  HRFCSDCIVTALRSGNKECPTCRKKL 91

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>COP1_PEA (P93471) Ubiquitin ligase protein COP1 (EC 6.3.2.-) (Constitutive|
           photomorphogenesis protein 1)
          Length = 672

 Score = 32.7 bits (73), Expect = 0.38
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -2

Query: 430 TIXGHIFCQKCIKASIQXXKKCPTCRRKLTISNFXRVYL 314
           T  GH FC  CI   ++    CP C   LT SN    +L
Sbjct: 60  TACGHSFCYMCIITHLRNKSDCPCCGHYLTNSNLFPNFL 98

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>BRE1B_PONPY (Q5RAU7) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-) (BRE1-B) (RING|
            finger protein 40)
          Length = 1001

 Score = 32.7 bits (73), Expect = 0.38
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 418  HIFCQKCIKASIQXX-KKCPTCRRKLTISNFXRVYL 314
            H+FC +C++   +   +KCP C       +F R+Y+
Sbjct: 965  HVFCFECVRGRYEARQRKCPKCNAAFGAHDFHRIYI 1000

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>BRE1B_MACFA (Q4R7K7) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-) (BRE1-B) (RING|
            finger protein 40)
          Length = 1001

 Score = 32.7 bits (73), Expect = 0.38
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 418  HIFCQKCIKASIQXX-KKCPTCRRKLTISNFXRVYL 314
            H+FC +C++   +   +KCP C       +F R+Y+
Sbjct: 965  HVFCFECVRGRYEARQRKCPKCNAAFGAHDFHRIYI 1000

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>BRE1B_HUMAN (O75150) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-) (BRE1-B) (RING|
            finger protein 40) (95 kDa retinoblastoma-associated
            protein) (RBP95)
          Length = 1001

 Score = 32.7 bits (73), Expect = 0.38
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 418  HIFCQKCIKASIQXX-KKCPTCRRKLTISNFXRVYL 314
            H+FC +C++   +   +KCP C       +F R+Y+
Sbjct: 965  HVFCFECVRGRYEARQRKCPKCNAAFGAHDFHRIYI 1000

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>PEX10_ARATH (Q9SYU4) Peroxisome assembly protein 10 (Peroxin-10) (AthPEX10)|
           (Pex10p) (PER8)
          Length = 381

 Score = 32.3 bits (72), Expect = 0.50
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 421 GHIFCQKCIKASIQXXKKCPTCRRKLTISNFXRVY 317
           GH+FC  CI       ++CP CR   T S+   +Y
Sbjct: 343 GHVFCWSCIMEWCNEKQECPLCRTPNTHSSLVCLY 377

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>CM007_PONPY (Q5RD97) Protein C13orf7 homolog|
          Length = 726

 Score = 32.3 bits (72), Expect = 0.50
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 427 IXGHIFCQKCIKASIQXXKKCPTCRRKLTISN 332
           I  H+FC  CI   ++   +CP CR  +T  N
Sbjct: 32  INNHVFCSICIDLWLKNNSQCPACRVPITPEN 63

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>CM007_HUMAN (Q5W0B1) Protein C13orf7|
          Length = 726

 Score = 32.3 bits (72), Expect = 0.50
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 427 IXGHIFCQKCIKASIQXXKKCPTCRRKLTISN 332
           I  H+FC  CI   ++   +CP CR  +T  N
Sbjct: 32  INNHVFCSICIDLWLKNNSQCPACRVPITPEN 63

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>BRE1_DEBHA (Q6BWW6) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-)|
          Length = 691

 Score = 32.3 bits (72), Expect = 0.50
 Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -2

Query: 430 TIXGHIFCQKCIKASIQXX-KKCPTCRRKLTISNFXRVYL 314
           T+ GH+FC  C +  +    ++CPTC +  + ++   ++L
Sbjct: 652 TVCGHVFCLGCTQERLAARLRRCPTCNKGFSANDLLSIHL 691

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>BRE1_GIBZE (Q4I7N9) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-)|
          Length = 703

 Score = 32.0 bits (71), Expect = 0.65
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -2

Query: 421 GHIFCQKCIKASI-QXXKKCPTCRR 350
           GH+FC +C+   I    +KCPTC R
Sbjct: 667 GHLFCNQCVDDRISNRMRKCPTCSR 691

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>RING2_PONPY (Q5R9J5) Ubiquitin ligase protein RING2 (EC 6.3.2.-) (RING finger|
           protein 2) (RING finger protein 1B) (RING1b)
          Length = 336

 Score = 32.0 bits (71), Expect = 0.65
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -2

Query: 418 HIFCQKCIKASIQXX-KKCPTCRRKL 344
           H FC  CI  +++   K+CPTCR+KL
Sbjct: 69  HRFCADCIITALRSGNKECPTCRKKL 94

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>RING2_MOUSE (Q9CQJ4) Ubiquitin ligase protein RING2 (EC 6.3.2.-) (RING finger|
           protein 2) (RING finger protein 1B) (RING1b)
          Length = 336

 Score = 32.0 bits (71), Expect = 0.65
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -2

Query: 418 HIFCQKCIKASIQXX-KKCPTCRRKL 344
           H FC  CI  +++   K+CPTCR+KL
Sbjct: 69  HRFCADCIITALRSGNKECPTCRKKL 94

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>RING2_HUMAN (Q99496) Ubiquitin ligase protein RING2 (EC 6.3.2.-) (RING finger|
           protein 2) (RING finger protein 1B) (RING1b) (RING
           finger protein BAP-1) (DinG protein)
           (Huntingtin-interacting protein 2-interacting protein 3)
           (HIP2-interacting protein 3)
          Length = 336

 Score = 32.0 bits (71), Expect = 0.65
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -2

Query: 418 HIFCQKCIKASIQXX-KKCPTCRRKL 344
           H FC  CI  +++   K+CPTCR+KL
Sbjct: 69  HRFCADCIITALRSGNKECPTCRKKL 94

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>RING2_BRARE (Q803I4) Ubiquitin ligase protein RING2 (EC 6.3.2.-) (RING finger|
           protein 2) (RING finger protein 1B) (RING1b)
          Length = 336

 Score = 32.0 bits (71), Expect = 0.65
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -2

Query: 418 HIFCQKCIKASIQXX-KKCPTCRRKL 344
           H FC  CI  +++   K+CPTCR+KL
Sbjct: 69  HRFCADCIITALRSGNKECPTCRKKL 94

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>RN125_MACFA (Q95KF1) RING finger protein 125 (EC 6.3.2.-)|
          Length = 231

 Score = 32.0 bits (71), Expect = 0.65
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -2

Query: 421 GHIFCQKCIKASIQXXK-KCPTCRRKL 344
           GH+FC+ CI  S++  K  CP CR  L
Sbjct: 52  GHVFCRSCIATSLKNNKWTCPYCRAYL 78

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>RN125_HUMAN (Q96EQ8) RING finger protein 125 (EC 6.3.2.-) (T-cell RING|
           activation protein 1) (TRAC-1)
          Length = 231

 Score = 32.0 bits (71), Expect = 0.65
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -2

Query: 421 GHIFCQKCIKASIQXXK-KCPTCRRKL 344
           GH+FC+ CI  S++  K  CP CR  L
Sbjct: 52  GHVFCRSCIATSLKNNKWTCPYCRAYL 78

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>RING2_RAT (Q4KLY4) Ubiquitin ligase protein RING2 (EC 6.3.2.-) (RING finger|
           protein 2) (RING finger protein 1B) (RING1b)
          Length = 308

 Score = 32.0 bits (71), Expect = 0.65
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -2

Query: 418 HIFCQKCIKASIQXX-KKCPTCRRKL 344
           H FC  CI  +++   K+CPTCR+KL
Sbjct: 69  HRFCADCIITALRSGNKECPTCRKKL 94

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>YNN1_CAEEL (Q03605) Hypothetical RING finger protein T02C1.1 in chromosome III|
          Length = 160

 Score = 32.0 bits (71), Expect = 0.65
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 421 GHIFCQKCIKASIQXXKKCPTCR 353
           GH +C+ CI++ +   +KCP CR
Sbjct: 24  GHSYCRFCIESHLNINEKCPLCR 46

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>RAD18_DEBHA (Q6BLM3) Postreplication repair ubiquitin-protein ligase E3 RAD18|
           (EC 6.-.-.-)
          Length = 491

 Score = 31.6 bits (70), Expect = 0.85
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -2

Query: 430 TIXGHIFCQKCIKASIQXXKKCPTCRRKLTISNFXRVYL 314
           T   H FC  CI+  +     CP C+ +   SN  RV L
Sbjct: 49  TSCNHTFCSHCIREYLIVNSHCPLCKAEQFESNLKRVIL 87

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>BRE1_YARLI (Q6CF78) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-)|
          Length = 700

 Score = 31.6 bits (70), Expect = 0.85
 Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -2

Query: 427 IXGHIFCQKCIKASIQX-XKKCPTCRRKLTISNFXRVYL 314
           + GH+FC +C +  +    +KCP C +  + ++   V+L
Sbjct: 662 VCGHVFCHQCAQDRLDARLRKCPNCNKPFSQNDLLTVHL 700

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>CM007_MOUSE (Q8K2Y0) Protein C13orf7 homolog|
          Length = 722

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 418 HIFCQKCIKASIQXXKKCPTCRRKLTISN 332
           H+FC  CI   ++   +CP CR  +T  N
Sbjct: 35  HVFCSICIDLWLKNNSQCPACRVPITPEN 63

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>DTX3_MOUSE (Q80V91) Protein deltex-3 (Deltex-3) (Deltex3) (mDTX3)|
          Length = 347

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 418 HIFCQKCIKASIQXXKKCPTCRR 350
           H FC+ CI  ++Q  K CP C R
Sbjct: 182 HSFCEGCITRALQVKKACPMCGR 204

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>DTX3_HUMAN (Q8N9I9) Protein deltex-3 (Deltex-3) (Deltex3)|
          Length = 347

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 418 HIFCQKCIKASIQXXKKCPTCRR 350
           H FC+ CI  ++Q  K CP C R
Sbjct: 182 HSFCEGCITRALQVKKACPMCGR 204

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>BRE1_DROME (Q9VRP9) Ubiquitin-protein ligase Bre1 (EC 6.3.2.-) (dBre1)|
          Length = 1044

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 418  HIFCQKCIKASIQXX-KKCPTCRRKLTISNFXRVYL 314
            H+FC  C++   +   +KCP C      +++ R+YL
Sbjct: 1008 HVFCYDCLRTRYETRQRKCPKCNCAFGANDYHRLYL 1043

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>COP1_ARATH (P43254) Ubiquitin-protein ligase COP1 (EC 6.3.2.-) (Constitutive|
           photomorphogenesis protein 1)
          Length = 675

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -2

Query: 430 TIXGHIFCQKCIKASIQXXKKCPTCRRKLT 341
           T  GH FC  CI   ++    CP C + LT
Sbjct: 65  TACGHSFCYMCIITHLRNKSDCPCCSQHLT 94

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>LNX2_MOUSE (Q91XL2) Ligand of Numb-protein X 2 (Numb-binding protein 2)|
          Length = 687

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 421 GHIFCQKCIKASIQXXKKCPTCRRKL 344
           GH FC KC++  +Q    CP  R++L
Sbjct: 67  GHTFCHKCLRNFLQEKDFCPLDRKRL 92

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>RAD18_ASPFU (Q4WZJ6) Postreplication repair ubiquitin-protein ligase E3 rad18|
           (EC 6.-.-.-)
          Length = 418

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -2

Query: 430 TIXGHIFCQKCIKASIQXXKKCPTCR 353
           T   H FC  CI+  +    KCP CR
Sbjct: 43  TSCSHTFCSLCIRRCLSTEGKCPACR 68

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>PEX10_SCHPO (Q9UUF0) Peroxisome assembly protein 10 (Peroxin-10) (Peroxisome|
           biogenesis factor 10)
          Length = 306

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -2

Query: 421 GHIFCQKCIKASIQXXKKCPTCR 353
           GHIFC  CI        +CP CR
Sbjct: 272 GHIFCWSCINGWTSKKSECPLCR 294

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>RAD18_NEUCR (P33288) Postreplication repair ubiquitin-protein ligase E3 rad-18|
           (EC 6.-.-.-) (UV radiation sensitivity protein 2)
          Length = 501

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -2

Query: 430 TIXGHIFCQKCIKASIQXXKKCPTCR 353
           T   H FC  CI+  +    KCP CR
Sbjct: 47  TSCNHTFCSLCIRRCLSVDSKCPLCR 72

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>ATL4I_ARATH (O49691) Putative RING-H2 finger protein ATL4I|
          Length = 289

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 418 HIFCQKCIKASIQXXKKCPTCRRKL 344
           H+F Q+CI    +  + CP CRR L
Sbjct: 131 HVFHQECIDLWFESHRTCPVCRRDL 155

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>BRE1_SCHPO (O74563) Ubiquitin-protein ligase bre1 (EC 6.3.2.-)|
          Length = 680

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -2

Query: 430 TIXGHIFCQKCIKASIQX-XKKCPTCRRKLTISNFXRVYL 314
           ++ GH FC +CI+  I+   ++CP C R    S+   ++L
Sbjct: 641 SLCGHGFCYQCIQKRIETRQRRCPICGRGFGASDVIPIHL 680

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>RN146_RAT (Q5XIK5) RING finger protein 146|
          Length = 352

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 418 HIFCQKCIKASIQXXKKCPTCRRKL 344
           H+FC  C+K +    K+C  CR+++
Sbjct: 53  HVFCYLCVKGASWLGKRCALCRQEI 77

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>RAD18_ASHGO (Q75EN0) Postreplication repair ubiquitin-protein ligase E3 RAD18|
           (EC 6.-.-.-)
          Length = 443

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -2

Query: 421 GHIFCQKCIKASIQXXKKCPTCRRKLTISNFXRVYL 314
           GH FC  CI+  +    +CP C  +L  +   + +L
Sbjct: 48  GHTFCSLCIREYLNKESRCPLCLAELRQNMLQKEFL 83

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>RN146_MOUSE (Q9CZW6) RING finger protein 146|
          Length = 359

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 418 HIFCQKCIKASIQXXKKCPTCRRKL 344
           H+FC  C+K +    K+C  CR+++
Sbjct: 55  HVFCYLCVKGASWLGKRCALCRQEI 79

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>RN146_HUMAN (Q9NTX7) RING finger protein 146 (Dactylidin)|
          Length = 359

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 418 HIFCQKCIKASIQXXKKCPTCRRKL 344
           H+FC  C+K +    K+C  CR+++
Sbjct: 54  HVFCYLCVKGASWLGKRCALCRQEI 78

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>LNX2_HUMAN (Q8N448) Ligand of Numb-protein X 2 (Numb-binding protein 2) (PDZ|
           domain-containing RING finger protein 1)
          Length = 690

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 421 GHIFCQKCIKASIQXXKKCPTCRRKL 344
           GH FC KC++  +Q    CP  R++L
Sbjct: 66  GHTFCYKCLRNFLQEKDFCPLDRKRL 91

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>RN146_PONPY (Q5REL3) RING finger protein 146|
          Length = 358

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 418 HIFCQKCIKASIQXXKKCPTCRRKL 344
           H+FC  C+K +    K+C  CR+++
Sbjct: 53  HVFCYLCVKGASWLGKRCALCRQEI 77

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>SAN1_YEAST (P22470) Protein SAN1|
          Length = 610

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 421 GHIFCQKCIKASIQXXKKCPTCRRKLTIS 335
           GHIF ++CI    +    CP CR+K++ S
Sbjct: 258 GHIFGRECIYKWSRLENSCPLCRQKISES 286

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>RO52_HUMAN (P19474) 52 kDa Ro protein (Sjoegren syndrome type A antigen)|
           (SS-A) (Ro(SS-A)) (52 kDa ribonucleoprotein autoantigen
           Ro/SS-A) (Tripartite motif protein 21) (RING finger
           protein 81)
          Length = 475

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -2

Query: 421 GHIFCQKCI-KASIQXXKKCPTCRRKLTISN 332
           GH FCQ+CI +        CP CR++  + N
Sbjct: 32  GHSFCQECISQVGKGGGSVCPVCRQRFLLKN 62

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>PEX10_YEAST (Q05568) Peroxisome assembly protein 10 (Peroxin-10) (Peroxisome|
           biogenesis factor 10)
          Length = 337

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 421 GHIFCQKCIKASIQXXKKCPTCRR 350
           GH+FC  C+ +  +   +CP CR+
Sbjct: 302 GHLFCWSCLMSWCKERPECPLCRQ 325

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>RAD5_CANGA (Q6FY76) DNA repair protein RAD5 (EC 3.6.1.-)|
          Length = 1151

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 6/34 (17%)
 Frame = -2

Query: 418  HIFCQKCIK--ASIQXXK----KCPTCRRKLTIS 335
            H+FC++C++   + Q  K    KCP CRR + ++
Sbjct: 917  HVFCKECLEEYGNFQKEKSLQQKCPNCRRDINLN 950

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>TRI12_MOUSE (Q99PQ1) Tripartite motif protein 12|
          Length = 284

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 17/36 (47%), Positives = 18/36 (50%), Gaps = 6/36 (16%)
 Frame = -2

Query: 421 GHIFCQKCIK---ASIQXXKK---CPTCRRKLTISN 332
           GH FCQ CI     SI+  KK   CP CR     SN
Sbjct: 31  GHTFCQGCITLYFESIKCDKKVFICPVCRISYQFSN 66

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>PEX12_CAEEL (Q19189) Putative peroxisome assembly protein 12 (Peroxin-12)|
          Length = 359

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 9/38 (23%), Positives = 18/38 (47%)
 Frame = -2

Query: 427 IXGHIFCQKCIKASIQXXKKCPTCRRKLTISNFXRVYL 314
           + G++FC  CI   +    KCP       + +  R+++
Sbjct: 322 VSGYVFCYTCINQYVNTYNKCPVTGCPANVQHLIRLFV 359

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>BRE1_NEUCR (Q7S304) Ubiquitin-protein ligase bre-1 (EC 6.3.2.-)|
          Length = 707

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -2

Query: 421 GHIFCQKCIKASI-QXXKKCPTCRRKLTISNFXRVYL 314
           GH+FC +C+   +    +KCP+C +    S+    +L
Sbjct: 671 GHVFCNECVDNRLANRMRKCPSCNKAFDRSDAMPAHL 707

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>TRI40_RAT (Q6MFY8) Tripartite motif protein 40 (RING finger protein 35)|
          Length = 247

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 5/28 (17%)
 Frame = -2

Query: 418 HIFCQKCI-----KASIQXXKKCPTCRR 350
           H+FC+ C+     KAS+     CP CR+
Sbjct: 29  HLFCRMCLIRHMDKASVSGVLSCPVCRK 56

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>RO52_MOUSE (Q62191) 52 kDa Ro protein (Sjoegren syndrome type A antigen)|
           (SS-A) (Ro(SS-A)) (52 kDa ribonucleoprotein autoantigen
           Ro/SS-A) (Tripartite motif protein 21)
          Length = 470

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -2

Query: 421 GHIFCQKCI-KASIQXXKKCPTCRRKLTISN 332
           GH FC++CI +        CP CR++  + N
Sbjct: 36  GHCFCKECIFEVGKNGGSSCPECRQQFLLRN 66

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>PEX12_ARATH (Q9M841) Putative peroxisome assembly protein 12 (Peroxin-12)|
          Length = 372

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 9/38 (23%), Positives = 18/38 (47%)
 Frame = -2

Query: 430 TIXGHIFCQKCIKASIQXXKKCPTCRRKLTISNFXRVY 317
           T+ G +FC  C+   +   K+CP      ++    R++
Sbjct: 332 TVSGFVFCYSCVFKYVSKYKRCPVTLIPASVDQIRRLF 369

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>TRI35_MOUSE (Q8C006) Tripartite motif protein 35 (Macrophage-derived|
           apoptosis-inducing RBCC protein) (MAIR protein) (Nc8
           protein) (Hemopoeitic lineage switch protein 5)
          Length = 501

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
 Frame = -2

Query: 421 GHIFCQKCIKA--SIQXXKKCPTCRRK 347
           GH FC++C+     +Q    CP C+ +
Sbjct: 37  GHNFCRRCVSGCWEVQTTPSCPVCKER 63

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>RN126_MOUSE (Q91YL2) RING finger protein 126|
          Length = 313

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 418 HIFCQKCIKASIQXXKKCPTCRRKLTISN 332
           H+F   CI   ++    CP CR+ LT  N
Sbjct: 251 HLFHDSCIVPWLEQHDSCPVCRKSLTGQN 279

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>RAD5_YEAST (P32849) DNA repair protein RAD5 (EC 3.6.1.-) (Radiation sensitivity|
            protein 5) (Revertibility protein 2)
          Length = 1169

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 6/32 (18%)
 Frame = -2

Query: 421  GHIFCQKCIKASIQXXK------KCPTCRRKL 344
            GH FC+KC+   I+         KCP CR ++
Sbjct: 933  GHSFCEKCLFEYIEFQNSKNLGLKCPNCRNQI 964

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>CWC24_CANGA (Q6FXX1) Pre-mRNA-splicing factor CWC24|
          Length = 226

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -2

Query: 421 GHIFCQKCIKASIQXXKKCPTC 356
           GH FCQKC    I+  K C  C
Sbjct: 181 GHYFCQKCFVNRIKIDKSCFIC 202

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>SMRA3_HUMAN (Q14527) SWI/SNF-related matrix-associated actin-dependent|
           regulator of chromatin subfamily A member 3 (EC 3.6.1.-)
           (Sucrose nonfermenting protein 2-like 3) (DNA binding
           protein/plasminogen activator inhibitor 1 regulator)
           (Helicase-like tran
          Length = 1009

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
 Frame = -2

Query: 418 HIFCQKCIKASIQXXK---KCPTCRRKLTISN 332
           H+FC+ CI   IQ  +   KCP CR  +   N
Sbjct: 777 HVFCKPCICQVIQNEQPHAKCPLCRNDIHEDN 808

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>ATL2A_ARATH (O22755) RING-H2 finger protein ATL2A (RING-H2 zinc finger protein|
           RHA3a)
          Length = 185

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 421 GHIFCQKCIKASIQXXKKCPTCRRKLT 341
           GH F  +CI   +     CP+CRR LT
Sbjct: 122 GHSFHVECIDKWLVSRSSCPSCRRILT 148

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>ICP0_HHV11 (P08393) Trans-acting transcriptional protein ICP0 (Immediate-early|
           protein IE110) (VMW110) (Alpha-0 protein)
          Length = 775

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 418 HIFCQKCIKASIQXXKKCPTCRRKL 344
           H FC  C+K  +Q    CP C  KL
Sbjct: 136 HRFCIPCMKTWMQLRNTCPLCNAKL 160

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>RN113_CAEEL (O17917) Putative RING finger protein 113 homolog|
          Length = 384

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 418 HIFCQKCIKASIQXXKKCPTCRR 350
           H FC  C   S Q   KCP C++
Sbjct: 258 HYFCTGCALKSFQKSSKCPICQQ 280

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>RAD18_YEAST (P10862) Postreplication repair ubiquitin-protein ligase E3 RAD18|
           (EC 6.-.-.-) (Radiation sensitivity protein 18)
          Length = 487

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -2

Query: 421 GHIFCQKCIKASIQXXKKCPTC 356
           GH FC  CI+  +     CP C
Sbjct: 44  GHTFCSLCIRTHLNNQPNCPLC 65

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>SMRA3_RABIT (Q95216) SWI/SNF-related matrix-associated actin-dependent|
           regulator of chromatin subfamily A member 3 (EC 3.6.1.-)
           (Sucrose nonfermenting protein 2-like 3) (RUSH-1)
          Length = 1005

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
 Frame = -2

Query: 418 HIFCQKCIKASIQXXK---KCPTCRRKL 344
           H+FC+ CI   IQ  +   KCP CR  +
Sbjct: 774 HVFCKPCICQCIQNEQPHAKCPLCRNDI 801

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>ATL3I_ARATH (Q7X843) RING-H2 finger protein ATL3I (YGHL1-C3HC4 RING fusion|
           protein)
          Length = 349

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -2

Query: 427 IXGHIFCQKCIKASIQXXKKCPTCRRKLTISN 332
           +  H F   CI   +     CP CRR L+ SN
Sbjct: 225 VCSHAFHLHCIDTWLLSNSTCPLCRRSLSTSN 256

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>TRAF7_MOUSE (Q922B6) E3 ubiquitin protein ligase TRAF7 (EC 6.3.2.-) (TNF|
           receptor-associated factor 7)
          Length = 594

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 430 TIXGHIFCQKCIKASIQXXKKCPTCRRKLTI 338
           T  GH FC++C   S    +KCP    KLT+
Sbjct: 68  TTCGHTFCRRCALKS----EKCPVDNAKLTV 94

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>ATL1F_ARATH (Q9LQM2) Putative RING-H2 finger protein ATL1F precursor|
          Length = 332

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 418 HIFCQKCIKASIQXXKKCPTCRRKLTISNFXRVYLPM 308
           H F   CI    +  K CP CRR+L + +   +  P+
Sbjct: 175 HSFHTICIDLWFEGHKTCPVCRRELDVEDRTSLEKPL 211

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>TRI22_HUMAN (Q8IYM9) Tripartite motif protein 22 (RING finger protein 94) (50|
           kDa-stimulated trans-acting factor) (Staf-50)
          Length = 498

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 7/37 (18%)
 Frame = -2

Query: 421 GHIFCQKCIKASIQXX-------KKCPTCRRKLTISN 332
           GH FCQ CI A I+           CP C+ +    N
Sbjct: 31  GHSFCQACITAKIKESVIISRGESSCPVCQTRFQPGN 67

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>RN126_HUMAN (Q9BV68) RING finger protein 126|
          Length = 326

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 418 HIFCQKCIKASIQXXKKCPTCRRKLTISN 332
           H+F   CI   ++    CP CR+ LT  N
Sbjct: 249 HLFHDGCIVPWLEQHDSCPVCRKSLTGQN 277

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>DG17_DICDI (P11467) Protein DG17|
          Length = 458

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 421 GHIFCQKCIKASIQXXKKCPTCR 353
           GH  C++C + S++  K+C TC+
Sbjct: 45  GHHACKECWEKSLETKKECMTCK 67

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>RAD18_CANAL (Q5A4N5) Postreplication repair ubiquitin-protein ligase E3 RAD18|
           (EC 6.-.-.-)
          Length = 378

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -2

Query: 418 HIFCQKCIKASIQXXKKCPTCRRKLTISNFXR 323
           H +C +CI+  +    +CP C+ ++  S   R
Sbjct: 46  HTYCSQCIREFLLRDNRCPLCKTEVFESGLKR 77

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>SINA4_ARATH (Q9STN8) Ubiquitin ligase SINAT4 (EC 6.3.2.-) (Seven in absentia|
           homolog 4)
          Length = 327

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 421 GHIFCQKCIKASIQXXKKCPTCRRKL 344
           GH  C  C    ++   +CPTCR++L
Sbjct: 81  GHTLCSTC---KVRVHNRCPTCRQEL 103

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>DP2L_METJA (Q59024) DNA polymerase II large subunit (EC 2.7.7.7) (Pol II)|
          Length = 1139

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 409 CQKCIKASIQXXKKCPTCRRKLTISNFXRVYLPM 308
           C  C K S+   + CP C  K+ + NF R+  P+
Sbjct: 669 CPNCGKISLY--RVCPFCGTKVELDNFGRIKAPL 700


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,856,533
Number of Sequences: 219361
Number of extensions: 1028486
Number of successful extensions: 2245
Number of sequences better than 10.0: 109
Number of HSP's better than 10.0 without gapping: 2170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2225
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result