>Y4105_ARATH (Q9M158) Putative protein At4g01050|
          Length = 466

 Score = 37.0 bits (84), Expect = 0.056
 Identities = 16/57 (28%), Positives = 32/57 (56%)
 Frame = -3

Query: 553 KISYLKRIGKGSNIVVMDSYGDNSKIVAKTLNSVGFKNCWVMAGGFSGRKGWAQSRL 383
           K+S   +  + + + ++D +  NS++VA+ +   GFK+ + +  G  G +GW  S L
Sbjct: 190 KLSLKFKDPENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAEGPRGWLNSSL 246

>YDNAA_RICMO (P0A3K3) Hypothetical 14.4 kDa protein in dnaA 5'region|
          Length = 123

 Score = 35.4 bits (80), Expect = 0.16
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = -3

Query: 493 GDNSKIVAKTLNSVGFKNCWVMAGGFSGR---KGWAQSRL 383
           G  S I A  + ++G+KNC+ ++ GF G    KGW Q+ L
Sbjct: 80  GYRSFIAANFITNIGYKNCYNISDGFEGNNQDKGWKQNNL 119

>Y915_RICCN (P0A3K2) Hypothetical protein RC0915|
          Length = 123

 Score = 35.4 bits (80), Expect = 0.16
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = -3

Query: 493 GDNSKIVAKTLNSVGFKNCWVMAGGFSGR---KGWAQSRL 383
           G  S I A  + ++G+KNC+ ++ GF G    KGW Q+ L
Sbjct: 80  GYRSFIAANFITNIGYKNCYNISDGFEGNNQDKGWKQNNL 119

>Y600_RICRI (Q9AKI4) Hypothetical protein RP600 homolog|
          Length = 123

 Score = 35.4 bits (80), Expect = 0.16
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = -3

Query: 493 GDNSKIVAKTLNSVGFKNCWVMAGGFSGR---KGWAQSRL 383
           G  S I A  + ++G+KNC+ ++ GF G    KGW Q+ L
Sbjct: 80  GYRSFIAANFITNIGYKNCYNISDGFEGNNQDKGWKQNNL 119

>Y600_RICPR (Q9ZCV8) Hypothetical protein RP600|
          Length = 123

 Score = 34.7 bits (78), Expect = 0.28
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = -3

Query: 493 GDNSKIVAKTLNSVGFKNCWVMAGGFSGR---KGWAQSRL 383
           G  S I A  + ++G+KNC+ ++ GF G    KGW Q+ L
Sbjct: 80  GYRSFIAANFIANIGYKNCYNISDGFEGNNQDKGWKQNNL 119

>RT31_MOUSE (Q61733) 28S ribosomal protein S31, mitochondrial precursor (S31mt)|
           (MRP-S31) (Imogen 38)
          Length = 384

 Score = 34.7 bits (78), Expect = 0.28
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = +3

Query: 411 PENPPAMTQQFLNPTLLSVLATIFELSPYESMTTMLEPLPILLRYE 548
           PE+PP    +FL+P L++  + + +  P++  TT  E L  L ++E
Sbjct: 129 PEDPPKKRNEFLSPELVAAASAVADSLPFDKQTTKSELLRQLQQHE 174

>AAC6_ENTAE (P50858) Aminoglycoside N(6')-acetyltransferase type 1 (EC|
           2.3.1.82) (AAC(6'))
          Length = 152

 Score = 33.1 bits (74), Expect = 0.80
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +2

Query: 323 RNHPRRLDDFYNGKVVGIRPKAALRPPFPAGESAGHDPAVLEPHAVECLGHNL 481
           + H   + +F +GKV   RP A L    P GE+ G     + P+A EC   N+
Sbjct: 32  QEHQSEIAEFLSGKVA--RPAAVLIAVAPDGEALGFAELSIRPYAEECYSGNV 82

>UBA4_YEAST (P38820) E1-like URM1 activator protein (Ubiquitin-like protein|
           activator 4)
          Length = 440

 Score = 33.1 bits (74), Expect = 0.80
 Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
 Frame = -3

Query: 628 LEELPNKIKGMVRNAKRAEAEIAALKISYLKRIGKGSNIVVMDSYGDNSKIVAKTL-NSV 452
           +   P  +   ++N +    ++  L+   L  + K SNIV++  YG++S++  + L +  
Sbjct: 356 ISHFPEAVNIPIKNLRDMNGDLKKLQ-EKLPSVEKDSNIVILCRYGNDSQLATRLLKDKF 414

Query: 451 GFKNCWVMAGGF 416
           GF N   + GG+
Sbjct: 415 GFSNVRDVRGGY 426

>GLPE_HAEIN (P44819) Thiosulfate sulfurtransferase glpE (EC 2.8.1.1)|
          Length = 105

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 19/50 (38%), Positives = 28/50 (56%)
 Frame = -3

Query: 520 SNIVVMDSYGDNSKIVAKTLNSVGFKNCWVMAGGFSGRKGWAQSRLGTDS 371
           S I+V   +G +S+ VA  L   G+KN + M GGF    GW ++ L  D+
Sbjct: 57  SPIIVSCYHGVSSRNVATFLVEQGYKNVFSMIGGFD---GWCRAELPIDT 103

>GPR44_HUMAN (Q9Y5Y4) Putative G-protein coupled receptor 44 (Chemoattractant|
           receptor-homologous molecule expressed on Th2 cells)
           (CD294 antigen)
          Length = 395

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 24/56 (42%), Positives = 28/56 (50%)
 Frame = +3

Query: 255 RSLRVVLEGVEVDDTVTNLSAAAGITRDGLMTSTTERL*ESVPRRLCAHPFRPENP 422
           RSLR VLE V VDD  + L  A    R    TS+T R   + P  LC+ P  P  P
Sbjct: 317 RSLRTVLESVLVDD--SELGGAGSSRR--RRTSSTAR--SASPLALCSRPEEPRGP 366

>DDX20_HUMAN (Q9UHI6) Probable ATP-dependent RNA helicase DDX20 (EC 3.6.1.-)|
           (DEAD box protein 20) (DEAD box protein DP 103)
           (Component of gems 3) (Gemin-3)
          Length = 824

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
 Frame = -2

Query: 677 VPQLPSNAK----EQDHLSATGRTSEQDKGHGAQREASRGGDRRAEDLVPQEDRQGLQHR 510
           VP L S+++    E D  S + RTS Q KG+ +  E S     +  +  P +DR  L+  
Sbjct: 640 VPVLASSSQSGDSESDSDSYSSRTSSQSKGNKSYLEGSSDNQLKDSESTPVDDRISLEQP 699

Query: 509 RHG 501
            +G
Sbjct: 700 PNG 702

>AROA_ARCFU (O28775) Probable 3-phosphoshikimate 1-carboxyvinyltransferase (EC|
           2.5.1.19) (5-enolpyruvylshikimate-3-phosphate synthase)
           (EPSP synthase) (EPSPS)
          Length = 416

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
 Frame = -3

Query: 613 NKIKGMVRNAKRAEAEIAALKISYLKRIGKGSNIVVMDSYGDNSKIVAKT----LNSVGF 446
           ++I+G+ +N K    E   LK   + + GKG    V+DS+GD+   +A +    L  V  
Sbjct: 330 DRIEGIHQNLKALGVESKPLKDGLIIKGGKGEFRGVVDSFGDHRMALAFSLLGLLGEVKC 389

Query: 445 KNCWVMAGGFSG 410
           +N  V++  F G
Sbjct: 390 RNAEVVSVSFPG 401

>XLNR_ASPNG (O42804) Transcriptional activator xlnR|
          Length = 875

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -2

Query: 656 AKEQDHLSATGRTSEQDKGHGAQREASRGGDRRAEDLVPQEDRQG 522
           A ++D  +A    ++   GH  Q  AS  G+R +ED  P +D  G
Sbjct: 93  ASKKDLAAAAAAATQGSNGHSGQANASLMGERTSEDSRPGQDVNG 137

>HORN_HUMAN (Q86YZ3) Hornerin|
          Length = 2850

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 31/122 (25%), Positives = 43/122 (35%), Gaps = 20/122 (16%)
 Frame = -2

Query: 680 GVPQLPSNAKEQDHLSATGRTSEQDKGHGAQREASRG----GDRRAEDLVPQEDRQGLQ- 516
           G  Q PS ++ +    +   +S    G+G+ R +SRG    G   +  L  QE R G   
Sbjct: 536 GSGQSPSPSRGRHESGSRQSSSYGPHGYGSGRSSSRGPYESGSGHSSGLGHQESRSGQSS 595

Query: 515 --------------HRRHGLVR*QLKDCGQDTQQRGVQELLG-HGRRILRPERVGAEPPW 381
                         H +HG    Q   CGQ     G     G HG    +  R G +   
Sbjct: 596 GYGQHGSSSGHSSTHGQHGSTSGQSSSCGQHGATSGQSSSHGQHGSGSSQSSRYGQQGSG 655

Query: 380 DG 375
            G
Sbjct: 656 SG 657

>RL9_MYCLE (P46385) 50S ribosomal protein L9|
          Length = 152

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
 Frame = -2

Query: 644 DHLSATGRTSEQDKG--------HGAQREASRGGDRRAEDLVPQEDRQGLQHRRH 504
           DHL + G T E   G        HG    ASRG  R+A+++    + + ++ R H
Sbjct: 10  DHLGSVGDTVEVKDGYGRNFLLPHGLAIVASRGAQRQADEIRRARETKAMRDREH 64

>FIMB_DICDI (P54680) Fimbrin|
          Length = 610

 Score = 30.0 bits (66), Expect = 6.8
 Identities = 21/79 (26%), Positives = 37/79 (46%)
 Frame = -3

Query: 556 LKISYLKRIGKGSNIVVMDSYGDNSKIVAKTLNSVGFKNCWVMAGGFSGRKGWAQSRLGT 377
           L +S L ++ +G  I ++ +   + K +A   + V   N  + A G     G+  S + T
Sbjct: 475 LTLSILWQLMRGHVISILTALSGSGKPIADA-DIVNVANSKLSAAGKKQISGFKDSTIST 533

Query: 376 DSYNLSVVEVIKPSRVIPA 320
               L V+E ++P  V PA
Sbjct: 534 GIPILDVIEAVRPGSVDPA 552

>CLPX_CHLPN (Q9Z760) ATP-dependent Clp protease ATP-binding subunit clpX|
          Length = 421

 Score = 30.0 bits (66), Expect = 6.8
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 11/84 (13%)
 Frame = -3

Query: 670 SSPPTQKNKIISLPLEELPNKIKGMVRNAKRAEAEIAALKISYLKRI-----------GK 524
           S  P+Q + +  L  +E+   I   V   +RA+  IA    ++ KRI           GK
Sbjct: 56  SETPSQPSDLRVLTPKEIKKHIDEYVIGQERAKKTIAVAVYNHYKRIRALLHNKQVSYGK 115

Query: 523 GSNIVVMDSYGDNSKIVAKTLNSV 452
            SN++++   G    ++AKTL  +
Sbjct: 116 -SNVLLLGPTGSGKTLIAKTLAKI 138

>YOW5_CAEEL (P30651) Hypothetical protein ZK643.5|
          Length = 487

 Score = 29.6 bits (65), Expect = 8.9
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -2

Query: 635 SATGRTSEQDKGHGAQREASRGGDRRAEDLV-PQEDRQGLQHRRHG 501
           S+   TS    G    R +SR   RR +D   P+EDR    +RR G
Sbjct: 254 SSYSSTSSSSDGRSRSRSSSRSDRRRRDDRKRPREDRDRKDYRRDG 299


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,410,986
Number of Sequences: 219361
Number of extensions: 1785781
Number of successful extensions: 6237
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 5987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6225
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6712189044
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)