ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal6c11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY476807.1| Oryza sativa extracellular calcium sensing recept... 381 e-102
2ref|XM_467599.1| Oryza sativa (japonica cultivar-group), mRNA 373 e-100
3dbj|AK058726.1| Oryza sativa (japonica cultivar-group) cDNA clon... 373 e-100
4gb|AY105162.1| Zea mays PCO100489 mRNA sequence 313 4e-82
5dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 192 1e-45
6dbj|AP005751.3| Oryza sativa (japonica cultivar-group) genomic D... 192 1e-45
7gb|AC024224.33| Homo sapiens 12 BAC RP11-133L14 (Roswell Park Ca... 44 0.60
8ref|XM_478422.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.4
9ref|XM_478421.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.4
10ref|XM_506371.1| PREDICTED Oryza sativa (japonica cultivar-group... 42 2.4
11gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome 42 2.4
12gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 42 2.4
13gb|CP000316.1| Polaromonas sp. JS666, complete genome 42 2.4
14ref|XM_687214.1| PREDICTED: Danio rerio similar to heparan N-sul... 42 2.4
15dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
16dbj|AP005103.5| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
17dbj|AP005320.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
18dbj|AK099296.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.4
19dbj|AK071773.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.4
20dbj|AK063798.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.4
21gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 42 2.4
22gb|AC158359.2| Mus musculus BAC clone RP23-412H3 from chromosome... 42 2.4
23gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 40 9.3
24gb|DQ478408.1| Homo sapiens neighbor of BRCA1 gene 1 (NBR1) gene... 40 9.3
25ref|NM_005821.3| Homo sapiens neighbor of BRCA1 gene 2 (NBR2), mRNA 40 9.3
26gb|DQ190457.1| Homo sapiens clone mck41_A neighbor of BRCA1 gene... 40 9.3
27gb|DQ190456.1| Homo sapiens clone mck578_U neighbor of BRCA1 gen... 40 9.3
28gb|DQ190455.1| Homo sapiens clone mck554_A neighbor of BRCA1 gen... 40 9.3
29gb|DQ190454.1| Homo sapiens clone mck43_A neighbor of BRCA1 gene... 40 9.3
30gb|DQ190453.1| Homo sapiens clone mck55_A neighbor of BRCA1 gene... 40 9.3
31gb|DQ190452.1| Homo sapiens clone mck94_A neighbor of BRCA1 gene... 40 9.3
32gb|DQ190451.1| Homo sapiens clone mck47_A neighbor of BRCA1 gene... 40 9.3
33gb|DQ190450.1| Homo sapiens clone mck432_A neighbor of BRCA1 gen... 40 9.3
34gb|BC034248.1| Homo sapiens neighbor of BRCA1 gene 2, mRNA (cDNA... 40 9.3
35gb|AC138682.14| Mus musculus chromosome 5, clone RP23-34L23, com... 40 9.3
36gb|DP000012.1| Macropus eugenii target 1 genomic scaffold 40 9.3
37gb|AF405554.1| Cryptosporidium parvum hypothetical protein gene,... 40 9.3
38emb|Z86064.2|HS435D1 Human DNA sequence from clone RP3-435D1 on ... 40 9.3
39gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, compl... 40 9.3
40ref|XM_967725.1| PREDICTED: Tribolium castaneum similar to sirtu... 40 9.3
41emb|AL714006.13| Mouse DNA sequence from clone RP23-173E15 on ch... 40 9.3
42gb|AC145395.3| Oryza sativa (japonica cultivar-group) chromosome... 40 9.3
43gb|AC118584.18| Papio anubis clone rp41-78d16, complete sequence 40 9.3
44gb|AC117273.41| Papio anubis clone rp41-167h10, complete sequence 40 9.3
45gb|DQ173295.1| Ictalurus punctatus CC chemokine SCYA121 gene, co... 40 9.3
46gb|AF355575.1| Azospirillum brasilense strain Sp7 beta-hydroxybu... 40 9.3
47gb|AC104161.2| Homo sapiens chromosome 3 clone RP11-32J15, compl... 40 9.3
48gb|AC092039.2| Homo sapiens chromosome 3 clone RP11-114P15, comp... 40 9.3
49ref|XM_625875.1| Cryptosporidium parvum Iowa II cryptosporidium ... 40 9.3
50dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
51gb|AC009241.4| Homo sapiens BAC clone RP11-542O24 from 2, comple... 40 9.3
52gb|AC060780.18| Homo sapiens chromosome 17, clone RP11-242D8, co... 40 9.3
53gb|AC135721.4| Homo sapiens, clone CTD-3199J23, complete sequence 40 9.3
54gb|AC131102.3| Mus musculus BAC clone RP23-101H16 from chromosom... 40 9.3
55gb|AC007385.3| Homo sapiens BAC clone RP11-325M10 from 2, comple... 40 9.3
56dbj|AK174337.1| Ciona intestinalis cDNA, clone:cicl044h18, full ... 40 9.3
57gb|AE005042.1| Halobacterium sp. NRC-1 section 73 of 170 of the ... 40 9.3
58gb|AC154464.2| Mus musculus BAC clone RP24-146B1 from 16, comple... 40 9.3
59gb|AC147533.3| Macropus eugenii clone ME_KBa-311C4, complete seq... 40 9.3
60dbj|AK116958.1| Ciona intestinalis cDNA, clone:cits010a21, full ... 40 9.3
61emb|AL929372.16| Mouse DNA sequence from clone RP23-461G6 on chr... 40 9.3
62gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 9.3
63gb|BC107773.1| Homo sapiens neighbor of BRCA1 gene 2, mRNA (cDNA... 40 9.3
64gb|AC132131.4| Mus musculus BAC clone RP23-356D16 from 10, compl... 40 9.3
65gb|U88573.1|HSU88573 Human NBR2 mRNA, complete cds 40 9.3 
>gb|AY476807.1| Oryza sativa extracellular calcium sensing receptor (CaS) mRNA,
            complete cds
          Length = 1196

 Score =  381 bits (192), Expect = e-102
 Identities = 337/384 (87%), Gaps = 1/384 (0%)
 Strand = Plus / Minus

                                                                        
Query: 298  ccgtcacgaacctttcagcggccgccggaatcacccgcgacggcttgatgacttctacaa 357
            ||||||||| ||  ||||||||||| ||||| |||||||||||| ||| |||||| || |
Sbjct: 1118 ccgtcacgagccgatcagcggccgcaggaattacccgcgacggcgtgacgacttcgacga 1059

                                                                        
Query: 358  cggaaaggttgtaggaatccgtcccaaggcggctctgcgcccaccctttccggccggaga 417
            | || |||||||| || |||||||| || |||||||||||||||||||||| ||||||||
Sbjct: 1058 ccgacaggttgtacgagtccgtcccgagccggctctgcgcccaccctttcctgccggaga 999

                                                                        
Query: 418  atccgccggccatgacccagcagttcttgaaccccacgctgttgagtgtcttggccacaa 477
            | ||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||| |
Sbjct: 998  agccgccggccatgacccagcagttcttgaatccgacgctgttgagcgtcttcgccacga 939

                                                                        
Query: 478  tctttgagttgtcaccgtacgagtccatgacgacgatgttggagcccttgccgatcctct 537
            |||| ||| |||| |  ||||||||||||| || || |||||||||||||||||||||||
Sbjct: 938  tcttcgagctgtcgcaatacgagtccatgatgatgacgttggagcccttgccgatcctct 879

                                                                        
Query: 538  tgaggtacgagatcttcagcgcggcgatctccgcctctgctcgcttcgcgttgcgcacca 597
            ||||||| ||||||||||||||||||||||||||||| ||| | ||||||||||||||||
Sbjct: 878  tgaggtaggagatcttcagcgcggcgatctccgcctcggcttgtttcgcgttgcgcacca 819

                                                                        
Query: 598  tgccctttatcttgttcggaagttcttccagtggcagagagatgatcttgttcttttgcg 657
            ||| ||| |||||| | ||||| |||||||| || | |||||||| ||||||| || |||
Sbjct: 818  tgctcttcatcttgcttggaagctcttccagcgggatagagatgagcttgttc-ttcgcg 760

                                    
Query: 658  ttggaggggagctgcggcacgccg 681
            || ||||||||||| |||||||||
Sbjct: 759  ttcgaggggagctgtggcacgccg 736
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>ref|XM_467599.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1164

 Score =  373 bits (188), Expect = e-100
 Identities = 336/384 (87%), Gaps = 1/384 (0%)
 Strand = Plus / Minus

                                                                        
Query: 298  ccgtcacgaacctttcagcggccgccggaatcacccgcgacggcttgatgacttctacaa 357
            ||||||||| ||  ||||||||||| ||||| |||||||||||| ||| |||||| || |
Sbjct: 1099 ccgtcacgagccgatcagcggccgcaggaattacccgcgacggcgtgacgacttcgacga 1040

                                                                        
Query: 358  cggaaaggttgtaggaatccgtcccaaggcggctctgcgcccaccctttccggccggaga 417
            | || |||||||| || |||||||| || |||||||||||||||||||||| ||||||||
Sbjct: 1039 ccgacaggttgtacgagtccgtcccgagccggctctgcgcccaccctttcctgccggaga 980

                                                                        
Query: 418  atccgccggccatgacccagcagttcttgaaccccacgctgttgagtgtcttggccacaa 477
            | ||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||| |
Sbjct: 979  agccgccggccatgacccagcagttcttgaatccgacgctgttgagcgtcttcgccacga 920

                                                                        
Query: 478  tctttgagttgtcaccgtacgagtccatgacgacgatgttggagcccttgccgatcctct 537
            |||| ||| |||| |  ||||||||||||| || || |||||||||||||||||||||||
Sbjct: 919  tcttcgagctgtcgcaatacgagtccatgatgatgacgttggagcccttgccgatcctct 860

                                                                        
Query: 538  tgaggtacgagatcttcagcgcggcgatctccgcctctgctcgcttcgcgttgcgcacca 597
            ||||||| ||||||||||||||||||||||||||||| ||| | ||||||||||||||||
Sbjct: 859  tgaggtaggagatcttcagcgcggcgatctccgcctcggcttgtttcgcgttgcgcacca 800

                                                                        
Query: 598  tgccctttatcttgttcggaagttcttccagtggcagagagatgatcttgttcttttgcg 657
            ||| |||  ||||| | ||||| |||||||| || | |||||||| ||||||| || |||
Sbjct: 799  tgctcttcgtcttgcttggaagctcttccagcgggatagagatgagcttgttc-ttcgcg 741

                                    
Query: 658  ttggaggggagctgcggcacgccg 681
            || ||||||||||| |||||||||
Sbjct: 740  ttcgaggggagctgtggcacgccg 717
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>dbj|AK058726.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-F04, full
           insert sequence
          Length = 1153

 Score =  373 bits (188), Expect = e-100
 Identities = 336/384 (87%), Gaps = 1/384 (0%)
 Strand = Plus / Minus

                                                                       
Query: 298 ccgtcacgaacctttcagcggccgccggaatcacccgcgacggcttgatgacttctacaa 357
           ||||||||| ||  ||||||||||| ||||| |||||||||||| ||| |||||| || |
Sbjct: 931 ccgtcacgagccgatcagcggccgcaggaattacccgcgacggcgtgacgacttcgacga 872

                                                                       
Query: 358 cggaaaggttgtaggaatccgtcccaaggcggctctgcgcccaccctttccggccggaga 417
           | || |||||||| || |||||||| || |||||||||||||||||||||| ||||||||
Sbjct: 871 ccgacaggttgtacgagtccgtcccgagccggctctgcgcccaccctttcctgccggaga 812

                                                                       
Query: 418 atccgccggccatgacccagcagttcttgaaccccacgctgttgagtgtcttggccacaa 477
           | ||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||| |
Sbjct: 811 agccgccggccatgacccagcagttcttgaatccgacgctgttgagcgtcttcgccacga 752

                                                                       
Query: 478 tctttgagttgtcaccgtacgagtccatgacgacgatgttggagcccttgccgatcctct 537
           |||| ||| |||| |  ||||||||||||| || || |||||||||||||||||||||||
Sbjct: 751 tcttcgagctgtcgcaatacgagtccatgatgatgacgttggagcccttgccgatcctct 692

                                                                       
Query: 538 tgaggtacgagatcttcagcgcggcgatctccgcctctgctcgcttcgcgttgcgcacca 597
           ||||||| ||||||||||||||||||||||||||||| ||| | ||||||||||||||||
Sbjct: 691 tgaggtaggagatcttcagcgcggcgatctccgcctcggcttgtttcgcgttgcgcacca 632

                                                                       
Query: 598 tgccctttatcttgttcggaagttcttccagtggcagagagatgatcttgttcttttgcg 657
           ||| |||  ||||| | ||||| |||||||| || | |||||||| ||||||| || |||
Sbjct: 631 tgctcttcgtcttgcttggaagctcttccagcgggatagagatgagcttgttc-ttcgcg 573

                                   
Query: 658 ttggaggggagctgcggcacgccg 681
           || ||||||||||| |||||||||
Sbjct: 572 ttcgaggggagctgtggcacgccg 549
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>gb|AY105162.1| Zea mays PCO100489 mRNA sequence
          Length = 737

 Score =  313 bits (158), Expect = 4e-82
 Identities = 284/326 (87%)
 Strand = Plus / Plus

                                                                       
Query: 327 atcacccgcgacggcttgatgacttctacaacggaaaggttgtaggaatccgtcccaagg 386
           ||||| || |||||| ||| |||||| || ||||| ||||||||||||||||| || || 
Sbjct: 332 atcacacgtgacggcgtgacgacttcgaccacggataggttgtaggaatccgttccgaga 391

                                                                       
Query: 387 cggctctgcgcccaccctttccggccggagaatccgccggccatgacccagcagttcttg 446
           |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 392 cggctctgcgcccaccctttccggccagagaagccgccggccatgacccagcagttcttg 451

                                                                       
Query: 447 aaccccacgctgttgagtgtcttggccacaatctttgagttgtcaccgtacgagtccatg 506
           |||||||||||||  || ||||| |||||| |||| | |  ||| | |||||||||||||
Sbjct: 452 aaccccacgctgtccagcgtcttcgccacagtcttggcgacgtcgctgtacgagtccatg 511

                                                                       
Query: 507 acgacgatgttggagcccttgccgatcctcttgaggtacgagatcttcagcgcggcgatc 566
           | || || |||||||||||| |||||| |||||||||| || |||||||| |||||||||
Sbjct: 512 atgatgacgttggagccctttccgatcttcttgaggtaggatatcttcagagcggcgatc 571

                                                                       
Query: 567 tccgcctctgctcgcttcgcgttgcgcaccatgccctttatcttgttcggaagttcttcc 626
           |||||||| |||  |||||||||||||||||||||||| | |||| ||||||| ||||||
Sbjct: 572 tccgcctcggctttcttcgcgttgcgcaccatgcccttcagcttgctcggaaggtcttcc 631

                                     
Query: 627 agtggcagagagatgatcttgttctt 652
           || |||| ||||| || |||||||||
Sbjct: 632 agcggcacagagacgagcttgttctt 657
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  192 bits (97), Expect = 1e-45
 Identities = 169/193 (87%)
 Strand = Plus / Plus

                                                                            
Query: 298      ccgtcacgaacctttcagcggccgccggaatcacccgcgacggcttgatgacttctacaa 357
                ||||||||| ||  ||||||||||| ||||| |||||||||||| ||| |||||| || |
Sbjct: 30380623 ccgtcacgagccgatcagcggccgcaggaattacccgcgacggcgtgacgacttcgacga 30380682

                                                                            
Query: 358      cggaaaggttgtaggaatccgtcccaaggcggctctgcgcccaccctttccggccggaga 417
                | || |||||||| || |||||||| || |||||||||||||||||||||| ||||||||
Sbjct: 30380683 ccgacaggttgtacgagtccgtcccgagccggctctgcgcccaccctttcctgccggaga 30380742

                                                                            
Query: 418      atccgccggccatgacccagcagttcttgaaccccacgctgttgagtgtcttggccacaa 477
                | ||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||| |
Sbjct: 30380743 agccgccggccatgacccagcagttcttgaatccgacgctgttgagcgtcttcgccacga 30380802

                             
Query: 478      tctttgagttgtc 490
                |||| ||| ||||
Sbjct: 30380803 tcttcgagctgtc 30380815



 Score =  161 bits (81), Expect = 4e-36
 Identities = 120/133 (90%)
 Strand = Plus / Plus

                                                                            
Query: 496      acgagtccatgacgacgatgttggagcccttgccgatcctcttgaggtacgagatcttca 555
                |||||||||||| || || |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 30380912 acgagtccatgatgatgacgttggagcccttgccgatcctcttgaggtaggagatcttca 30380971

                                                                            
Query: 556      gcgcggcgatctccgcctctgctcgcttcgcgttgcgcaccatgccctttatcttgttcg 615
                ||||||||||||||||||| ||| | ||||||||||||||||||| |||  ||||| | |
Sbjct: 30380972 gcgcggcgatctccgcctcggcttgtttcgcgttgcgcaccatgctcttcgtcttgcttg 30381031

                             
Query: 616      gaagttcttccag 628
                |||| ||||||||
Sbjct: 30381032 gaagctcttccag 30381044



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 42/47 (89%), Gaps = 1/47 (2%)
 Strand = Plus / Plus

                                                               
Query: 635      agagatgatcttgttcttttgcgttggaggggagctgcggcacgccg 681
                |||||||| |||||||||  ||||| ||||||||||| |||||||||
Sbjct: 30381143 agagatgagcttgttcttc-gcgttcgaggggagctgtggcacgccg 30381188
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>dbj|AP005751.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0072H09
          Length = 160541

 Score =  192 bits (97), Expect = 1e-45
 Identities = 169/193 (87%)
 Strand = Plus / Plus

                                                                         
Query: 298   ccgtcacgaacctttcagcggccgccggaatcacccgcgacggcttgatgacttctacaa 357
             ||||||||| ||  ||||||||||| ||||| |||||||||||| ||| |||||| || |
Sbjct: 61483 ccgtcacgagccgatcagcggccgcaggaattacccgcgacggcgtgacgacttcgacga 61542

                                                                         
Query: 358   cggaaaggttgtaggaatccgtcccaaggcggctctgcgcccaccctttccggccggaga 417
             | || |||||||| || |||||||| || |||||||||||||||||||||| ||||||||
Sbjct: 61543 ccgacaggttgtacgagtccgtcccgagccggctctgcgcccaccctttcctgccggaga 61602

                                                                         
Query: 418   atccgccggccatgacccagcagttcttgaaccccacgctgttgagtgtcttggccacaa 477
             | ||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||| |
Sbjct: 61603 agccgccggccatgacccagcagttcttgaatccgacgctgttgagcgtcttcgccacga 61662

                          
Query: 478   tctttgagttgtc 490
             |||| ||| ||||
Sbjct: 61663 tcttcgagctgtc 61675



 Score =  161 bits (81), Expect = 4e-36
 Identities = 120/133 (90%)
 Strand = Plus / Plus

                                                                         
Query: 496   acgagtccatgacgacgatgttggagcccttgccgatcctcttgaggtacgagatcttca 555
             |||||||||||| || || |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 61772 acgagtccatgatgatgacgttggagcccttgccgatcctcttgaggtaggagatcttca 61831

                                                                         
Query: 556   gcgcggcgatctccgcctctgctcgcttcgcgttgcgcaccatgccctttatcttgttcg 615
             ||||||||||||||||||| ||| | ||||||||||||||||||| |||  ||||| | |
Sbjct: 61832 gcgcggcgatctccgcctcggcttgtttcgcgttgcgcaccatgctcttcgtcttgcttg 61891

                          
Query: 616   gaagttcttccag 628
             |||| ||||||||
Sbjct: 61892 gaagctcttccag 61904



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 42/47 (89%), Gaps = 1/47 (2%)
 Strand = Plus / Plus

                                                            
Query: 635   agagatgatcttgttcttttgcgttggaggggagctgcggcacgccg 681
             |||||||| |||||||||  ||||| ||||||||||| |||||||||
Sbjct: 62003 agagatgagcttgttcttc-gcgttcgaggggagctgtggcacgccg 62048
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>gb|AC024224.33| Homo sapiens 12 BAC RP11-133L14 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 165414

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 184  gaaattcagtgaaatgattctg 205
            ||||||||||||||||||||||
Sbjct: 9334 gaaattcagtgaaatgattctg 9313
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>ref|XM_478422.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 872

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 407 ccggccggagaatccgccggccatg 431
           |||||||||||||||||| ||||||
Sbjct: 4   ccggccggagaatccgcctgccatg 28
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>ref|XM_478421.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 787

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 407 ccggccggagaatccgccggccatg 431
           |||||||||||||||||| ||||||
Sbjct: 7   ccggccggagaatccgcctgccatg 31
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>ref|XM_506371.1| PREDICTED Oryza sativa (japonica cultivar-group),
           OSJNBa0036M16.111-2 mRNA
          Length = 801

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 407 ccggccggagaatccgccggccatg 431
           |||||||||||||||||| ||||||
Sbjct: 54  ccggccggagaatccgcctgccatg 78
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>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome
          Length = 5650368

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 451     ccacgctgttgagtgtcttggccac 475
               ||||||||||||| |||||||||||
Sbjct: 5275319 ccacgctgttgagggtcttggccac 5275295
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>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 407    ccggccggagaatccgccggc 427
              |||||||||||||||||||||
Sbjct: 531190 ccggccggagaatccgccggc 531210
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 553    tcagcgcggcgatctccgcct 573
              |||||||||||||||||||||
Sbjct: 805196 tcagcgcggcgatctccgcct 805176
to top
>ref|XM_687214.1| PREDICTED: Danio rerio similar to heparan N-sulfatase (LOC563849),
           mRNA
          Length = 1080

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 608 cttgttcggaagttcttccag 628
           |||||||||||||||||||||
Sbjct: 121 cttgttcggaagttcttccag 141
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 407      ccggccggagaatccgccggccatg 431
                |||||||||||||||||| ||||||
Sbjct: 19881976 ccggccggagaatccgcctgccatg 19882000
to top
>dbj|AP005103.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0036M16
          Length = 158880

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 407   ccggccggagaatccgccggccatg 431
             |||||||||||||||||| ||||||
Sbjct: 46626 ccggccggagaatccgcctgccatg 46650
to top
>dbj|AP005320.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0650C03
          Length = 144337

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 407    ccggccggagaatccgccggccatg 431
              |||||||||||||||||| ||||||
Sbjct: 122135 ccggccggagaatccgcctgccatg 122159
to top
>dbj|AK099296.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023138P10, full
           insert sequence
          Length = 787

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 407 ccggccggagaatccgccggccatg 431
           |||||||||||||||||| ||||||
Sbjct: 7   ccggccggagaatccgcctgccatg 31
to top
>dbj|AK071773.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111H14, full
           insert sequence
          Length = 800

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 407 ccggccggagaatccgccggccatg 431
           |||||||||||||||||| ||||||
Sbjct: 54  ccggccggagaatccgcctgccatg 78
to top
>dbj|AK063798.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-F05, full
           insert sequence
          Length = 872

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 407 ccggccggagaatccgccggccatg 431
           |||||||||||||||||| ||||||
Sbjct: 4   ccggccggagaatccgcctgccatg 28
to top
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 320     cgccggaatcacccgcgacggcttg 344
               |||||| ||||||||||||||||||
Sbjct: 3708033 cgccggcatcacccgcgacggcttg 3708009
to top
>gb|AC158359.2| Mus musculus BAC clone RP23-412H3 from chromosome 13, complete sequence
          Length = 210045

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 187   attcagtgaaatgattctgca 207
             |||||||||||||||||||||
Sbjct: 60957 attcagtgaaatgattctgca 60937
to top
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 329     cacccgcgacggcttgatga 348
               ||||||||||||||||||||
Sbjct: 1503519 cacccgcgacggcttgatga 1503538
to top
>gb|DQ478408.1| Homo sapiens neighbor of BRCA1 gene 1 (NBR1) gene, partial cds;
             neighbor of BRCA1 gene 2 (NBR2) gene, complete cds; and
             early onset breast cancer 1 (BRCA1) gene, partial cds
          Length = 150505

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 635   agagatgatcttgttctttt 654
             ||||||||||||||||||||
Sbjct: 57692 agagatgatcttgttctttt 57673
to top
>ref|NM_005821.3| Homo sapiens neighbor of BRCA1 gene 2 (NBR2), mRNA
          Length = 1392

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 635 agagatgatcttgttctttt 654
           ||||||||||||||||||||
Sbjct: 560 agagatgatcttgttctttt 579
to top
>gb|DQ190457.1| Homo sapiens clone mck41_A neighbor of BRCA1 gene 1 (NBR1) gene,
             partial cds; hypothetical protein LOC10230 (NBR2) gene,
             complete cds; and breast cancer 1 early onset (BRCA1)
             gene, partial cds
          Length = 147576

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 635   agagatgatcttgttctttt 654
             ||||||||||||||||||||
Sbjct: 54760 agagatgatcttgttctttt 54741
to top
>gb|DQ190456.1| Homo sapiens clone mck578_U neighbor of BRCA1 gene 1 (NBR1) gene,
             partial cds; and hypothetical protein LOC10230 (NBR2) and
             breast cancer 1 early onset (BRCA1) genes, complete cds
          Length = 150669

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 635   agagatgatcttgttctttt 654
             ||||||||||||||||||||
Sbjct: 54796 agagatgatcttgttctttt 54777
to top
>gb|DQ190455.1| Homo sapiens clone mck554_A neighbor of BRCA1 gene 1 (NBR1) gene,
             partial cds; and hypothetical protein LOC10230 (NBR2) and
             breast cancer 1 early onset (BRCA1) genes, complete cds
          Length = 155470

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 635   agagatgatcttgttctttt 654
             ||||||||||||||||||||
Sbjct: 57365 agagatgatcttgttctttt 57346
to top
>gb|DQ190454.1| Homo sapiens clone mck43_A neighbor of BRCA1 gene 1 (NBR1) gene,
             partial cds; and hypothetical protein LOC10230 (NBR2) and
             breast cancer 1 early onset (BRCA1) genes, complete cds
          Length = 150582

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 635   agagatgatcttgttctttt 654
             ||||||||||||||||||||
Sbjct: 50217 agagatgatcttgttctttt 50198
to top
>gb|DQ190453.1| Homo sapiens clone mck55_A neighbor of BRCA1 gene 1 (NBR1) gene,
             partial cds; and hypothetical protein LOC10230 (NBR2) and
             breast cancer 1 early onset (BRCA1) genes, complete cds
          Length = 156879

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 635   agagatgatcttgttctttt 654
             ||||||||||||||||||||
Sbjct: 56064 agagatgatcttgttctttt 56045
to top
>gb|DQ190452.1| Homo sapiens clone mck94_A neighbor of BRCA1 gene 1 (NBR1) gene,
             partial cds; and hypothetical protein LOC10230 (NBR2) and
             breast cancer 1 early onset (BRCA1) genes, complete cds
          Length = 156121

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 635   agagatgatcttgttctttt 654
             ||||||||||||||||||||
Sbjct: 53702 agagatgatcttgttctttt 53683
to top
>gb|DQ190451.1| Homo sapiens clone mck47_A neighbor of BRCA1 gene 1 (NBR1) gene,
             partial cds; and hypothetical protein LOC10230 (NBR2) and
             breast cancer 1 early onset (BRCA1) genes, complete cds
          Length = 161765

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 635   agagatgatcttgttctttt 654
             ||||||||||||||||||||
Sbjct: 53775 agagatgatcttgttctttt 53756
to top
>gb|DQ190450.1| Homo sapiens clone mck432_A neighbor of BRCA1 gene 1 (NBR1) gene,
             partial cds; and hypothetical protein LOC10230 (NBR2) and
             breast cancer 1 early onset (BRCA1) genes, complete cds
          Length = 167910

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 635   agagatgatcttgttctttt 654
             ||||||||||||||||||||
Sbjct: 54645 agagatgatcttgttctttt 54626
to top
>gb|BC034248.1| Homo sapiens neighbor of BRCA1 gene 2, mRNA (cDNA clone
            IMAGE:4339497), partial cds
          Length = 2054

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 635  agagatgatcttgttctttt 654
            ||||||||||||||||||||
Sbjct: 1577 agagatgatcttgttctttt 1596
to top
>gb|AC138682.14| Mus musculus chromosome 5, clone RP23-34L23, complete sequence
          Length = 241585

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 229   tttttcagttgtccacactg 248
             ||||||||||||||||||||
Sbjct: 92153 tttttcagttgtccacactg 92172
to top
>gb|DP000012.1| Macropus eugenii target 1 genomic scaffold
          Length = 1996640

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 167    ttacagaacaagagttggaa 186
              ||||||||||||||||||||
Sbjct: 817557 ttacagaacaagagttggaa 817538
to top
>gb|AF405554.1| Cryptosporidium parvum hypothetical protein gene, partial cds;
             hypothetical protein and polyketide synthase (PKS1) genes,
             complete cds; and aminopeptidase (AP1) gene, partial cds
          Length = 43339

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 212   ttcagagttcagatcatttt 231
             ||||||||||||||||||||
Sbjct: 29453 ttcagagttcagatcatttt 29434
to top
>emb|Z86064.2|HS435D1 Human DNA sequence from clone RP3-435D1 on chromosome Xq25 Contains the
              3' end of the HS6ST2 gene for heparan sulfate
              6-O-sulfotransferase 2, a novel gene and the 3' end of a
              novel gene, complete sequence
          Length = 184975

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 184    gaaattcagtgaaatgattc 203
              ||||||||||||||||||||
Sbjct: 142994 gaaattcagtgaaatgattc 142975
to top
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 555     agcgcggcgatctccgcctc 574
               ||||||||||||||||||||
Sbjct: 2356248 agcgcggcgatctccgcctc 2356229
to top
>ref|XM_967725.1| PREDICTED: Tribolium castaneum similar to sirtuin 5 (silent mating
           type information regulation 2 homolog) 5 (LOC661574),
           mRNA
          Length = 765

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 612 ttcggaagttcttccagtgg 631
           ||||||||||||||||||||
Sbjct: 527 ttcggaagttcttccagtgg 508
to top
>emb|AL714006.13| Mouse DNA sequence from clone RP23-173E15 on chromosome 4 Contains a
             novel gene and the 3' end of a novel gene, complete
             sequence
          Length = 196097

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 189   tcagtgaaatgattctgcat 208
             ||||||||||||||||||||
Sbjct: 57593 tcagtgaaatgattctgcat 57574
to top
>gb|AC145395.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0047M04, complete sequence
          Length = 109523

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 177   agagttggaaattcagtgaa 196
             ||||||||||||||||||||
Sbjct: 32045 agagttggaaattcagtgaa 32026
to top
>gb|AC118584.18| Papio anubis clone rp41-78d16, complete sequence
          Length = 189610

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 60     taaacccattatctaatttt 79
              ||||||||||||||||||||
Sbjct: 121613 taaacccattatctaatttt 121632
to top
>gb|AC117273.41| Papio anubis clone rp41-167h10, complete sequence
          Length = 184931

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 60    taaacccattatctaatttt 79
             ||||||||||||||||||||
Sbjct: 28679 taaacccattatctaatttt 28660
to top
>gb|DQ173295.1| Ictalurus punctatus CC chemokine SCYA121 gene, complete cds
          Length = 2362

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 190  cagtgaaatgattctgcatt 209
            ||||||||||||||||||||
Sbjct: 1268 cagtgaaatgattctgcatt 1249
to top
>gb|AF355575.1| Azospirillum brasilense strain Sp7 beta-hydroxybutyrate
           dehydrogenase (hbdH) gene, complete cds
          Length = 786

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 553 tcagcgcggcgatctccgcc 572
           ||||||||||||||||||||
Sbjct: 223 tcagcgcggcgatctccgcc 204
to top
>gb|AC104161.2| Homo sapiens chromosome 3 clone RP11-32J15, complete sequence
          Length = 166659

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 619    gttcttccagtggcagagag 638
              ||||||||||||||||||||
Sbjct: 139300 gttcttccagtggcagagag 139319
to top
>gb|AC092039.2| Homo sapiens chromosome 3 clone RP11-114P15, complete sequence
          Length = 166560

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 619  gttcttccagtggcagagag 638
            ||||||||||||||||||||
Sbjct: 8726 gttcttccagtggcagagag 8745
to top
>ref|XM_625875.1| Cryptosporidium parvum Iowa II cryptosporidium polyketide synthase
             (cgd4_2900), partial mRNA
          Length = 40242

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 212   ttcagagttcagatcatttt 231
             ||||||||||||||||||||
Sbjct: 27387 ttcagagttcagatcatttt 27368
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 177      agagttggaaattcagtgaa 196
                ||||||||||||||||||||
Sbjct: 27080992 agagttggaaattcagtgaa 27080973
to top
>gb|AC009241.4| Homo sapiens BAC clone RP11-542O24 from 2, complete sequence
          Length = 171923

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 635   agagatgatcttgttctttt 654
             ||||||||||||||||||||
Sbjct: 38354 agagatgatcttgttctttt 38335
to top
>gb|AC060780.18| Homo sapiens chromosome 17, clone RP11-242D8, complete sequence
          Length = 110669

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 635   agagatgatcttgttctttt 654
             ||||||||||||||||||||
Sbjct: 54350 agagatgatcttgttctttt 54369
to top
>gb|AC135721.4| Homo sapiens, clone CTD-3199J23, complete sequence
          Length = 150472

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 635   agagatgatcttgttctttt 654
             ||||||||||||||||||||
Sbjct: 19559 agagatgatcttgttctttt 19540
to top
>gb|AC131102.3| Mus musculus BAC clone RP23-101H16 from chromosome 5, complete sequence
          Length = 208536

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 229    tttttcagttgtccacactg 248
              ||||||||||||||||||||
Sbjct: 113825 tttttcagttgtccacactg 113844
to top
>gb|AC007385.3| Homo sapiens BAC clone RP11-325M10 from 2, complete sequence
          Length = 188062

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 173    aacaagagttggaaattcag 192
              ||||||||||||||||||||
Sbjct: 113988 aacaagagttggaaattcag 114007
to top
>dbj|AK174337.1| Ciona intestinalis cDNA, clone:cicl044h18, full insert sequence
          Length = 1109

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 642 atcttgttcttttgcgttgg 661
           ||||||||||||||||||||
Sbjct: 588 atcttgttcttttgcgttgg 569
to top
>gb|AE005042.1| Halobacterium sp. NRC-1 section 73 of 170 of the complete genome
          Length = 10615

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 266  agtcgtcctggagggagtcg 285
            ||||||||||||||||||||
Sbjct: 5427 agtcgtcctggagggagtcg 5408
to top
>gb|AC154464.2| Mus musculus BAC clone RP24-146B1 from 16, complete sequence
          Length = 143858

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 625    ccagtggcagagagatgatc 644
              ||||||||||||||||||||
Sbjct: 117119 ccagtggcagagagatgatc 117100
to top
>gb|AC147533.3| Macropus eugenii clone ME_KBa-311C4, complete sequence
          Length = 153357

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 167    ttacagaacaagagttggaa 186
              ||||||||||||||||||||
Sbjct: 120563 ttacagaacaagagttggaa 120544
to top
>dbj|AK116958.1| Ciona intestinalis cDNA, clone:cits010a21, full insert sequence
          Length = 1058

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 642 atcttgttcttttgcgttgg 661
           ||||||||||||||||||||
Sbjct: 589 atcttgttcttttgcgttgg 570
to top
>emb|AL929372.16| Mouse DNA sequence from clone RP23-461G6 on chromosome 2, complete
             sequence
          Length = 170342

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 203   ctgcatttcttcagagttca 222
             ||||||||||||||||||||
Sbjct: 24010 ctgcatttcttcagagttca 24029
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 177      agagttggaaattcagtgaa 196
                ||||||||||||||||||||
Sbjct: 27408045 agagttggaaattcagtgaa 27408026
to top
>gb|BC107773.1| Homo sapiens neighbor of BRCA1 gene 2, mRNA (cDNA clone MGC:104305
           IMAGE:6452095), complete cds
          Length = 1045

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 635 agagatgatcttgttctttt 654
           ||||||||||||||||||||
Sbjct: 511 agagatgatcttgttctttt 530
to top
>gb|AC132131.4| Mus musculus BAC clone RP23-356D16 from 10, complete sequence
          Length = 170192

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 194   gaaatgattctgcatttctt 213
             ||||||||||||||||||||
Sbjct: 47973 gaaatgattctgcatttctt 47992
to top
>gb|U88573.1|HSU88573 Human NBR2 mRNA, complete cds
          Length = 1368

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 635 agagatgatcttgttctttt 654
           ||||||||||||||||||||
Sbjct: 536 agagatgatcttgttctttt 555


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,522,370
Number of Sequences: 3902068
Number of extensions: 5522370
Number of successful extensions: 100441
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 99928
Number of HSP's gapped (non-prelim): 509
length of query: 681
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 658
effective length of database: 17,143,297,704
effective search space: 11280289889232
effective search space used: 11280289889232
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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