No.
Definition
Score (bits)
E Value
1 gb|AY062186.1| Oryza sativa chromatin-remodeling factor CHD3 (PK...
74
6e-10
2 dbj|AK065390.1| Oryza sativa (japonica cultivar-group) cDNA clon...
74
6e-10
3 gb|AY062188.1|AY062187S2 Oryza sativa (indica cultivar-group) ch...
62
2e-06
4 dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D...
62
2e-06
5 dbj|AP005919.3| Oryza sativa (japonica cultivar-group) genomic D...
62
2e-06
6 dbj|AP007226.1| Oryza sativa (japonica cultivar-group) genomic D...
62
2e-06
7 gb|AC129926.4| Homo sapiens chromosome 17, clone RP11-663N22, co...
42
2.3
8 emb|CR378667.1| Photobacterium profundum SS9; segment 5/12
42
2.3
9 gb|AC105282.5| Homo sapiens chromosome 18, clone RP11-452F20, co...
42
2.3
10 gb|AC087297.13| Homo sapiens chromosome 17, clone RP11-362P24, c...
42
2.3
11 gb|AC091189.4| Homo sapiens chromosome 8, clone RP11-606D13, com...
42
2.3
12 gb|AC105226.4| Homo sapiens chromosome 8, clone RP11-970F14, com...
42
2.3
13 gb|AC116553.2| Homo sapiens chromosome 16 clone RP11-43P5, compl...
42
2.3
14 gb|AC019041.8| Homo sapiens BAC clone RP11-4K20 from 2, complete...
42
2.3
15 gb|AC106785.3| Homo sapiens chromosome 16 clone RP11-352B15, com...
42
2.3
16 gb|AC150385.2| Branchiostoma floridae clone CH302-101G3, complet...
40
9.0
17 ref|XM_523395.1| PREDICTED: Pan troglodytes similar to RGD, leuc...
40
9.0
18 gb|U93872.2| Kaposi's sarcoma-associated herpesvirus glycoprotei...
40
9.0
19 gb|AE001389.2| Plasmodium falciparum 3D7 chromosome 2 section 26...
40
9.0
20 gb|AF148805.2| Human herpesvirus 8 isolate GK18, complete genome
40
9.0
21 emb|Z69384.1|CET11G6 Caenorhabditis elegans Cosmid T11G6, comple...
40
9.0
22 emb|AL691463.2| Human DNA sequence from clone RP11-290H6 on chro...
40
9.0
23 emb|BX572097.1| Prochlorococcus marinus MIT9313 complete genome;...
40
9.0
24 emb|AL845465.2| Mouse DNA sequence from clone RP23-119B10 on chr...
40
9.0
25 gb|AC091819.3| Homo sapiens chromosome 5 clone CTC-264O10, compl...
40
9.0
26 gb|AC011395.5| Homo sapiens chromosome 5 clone CTB-187I2, comple...
40
9.0
27 emb|AL928958.15| Mouse DNA sequence from clone RP23-344N23 on ch...
40
9.0
28 gb|U75698.1|KSU75698 Kaposi's sarcoma-associated herpesvirus lon...
40
9.0
29 gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1...
40
9.0
30 emb|CR388150.14| Zebrafish DNA sequence from clone DKEY-115A2 in...
40
9.0
31 gb|AC005273.1|AC005273 Homo sapiens chromosome 17, clone hRPK.87...
40
9.0
32 emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB1...
40
9.0
>dbj|AP008212.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 61.9 bits (31), Expect = 2e-06
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 97 cctacacattaaccatcgatttccattttgtcctccggctttacagt 143
|||||| |||||| ||||||||||||||||||||||| ||| |||||
Sbjct: 4178383 cctacaaattaactatcgatttccattttgtcctccgccttaacagt 4178429
Score = 54.0 bits (27), Expect = 6e-04
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 304 tcaaactgatggaggctgttggctagactcgcggaagctgccttgtcaccg 354
||||||| ||||||||| ||||||| || | |||||||||||||||||||
Sbjct: 4178632 tcaaacttatggaggctattggctaaaccggaggaagctgccttgtcaccg 4178682
Score = 50.1 bits (25), Expect = 0.009
Identities = 73/89 (82%)
Strand = Plus / Plus
Query: 571 tctttctgataaactcaacaatctttctctggatgtccctgtattgggataggcttgttg 630
||||||| ||||||||||| ||||||||||| | |||||||| ||| | ||| ||||
Sbjct: 4180636 tctttctaataaactcaactatctttctctgtgtatccctgtaatggatcatgctcgttg 4180695
Query: 631 ggttcacctgcacttcctgtgtgctttcc 659
||||| ||| |||| ||||||||||||
Sbjct: 4180696 ggttcgactggccttcttgtgtgctttcc 4180724
Score = 48.1 bits (24), Expect = 0.037
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 475 aggaacattttgttcagtaagatcatcaggaacaggagttttcgtttt 522
||||| || |||||||| ||||||||||||||||| ||||| |||||
Sbjct: 4180431 aggaaaatcttgttcagcgagatcatcaggaacaggggtttttgtttt 4180478
>dbj|AP005919.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0554A06
Length = 165311
Score = 61.9 bits (31), Expect = 2e-06
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 97 cctacacattaaccatcgatttccattttgtcctccggctttacagt 143
|||||| |||||| ||||||||||||||||||||||| ||| |||||
Sbjct: 23604 cctacaaattaactatcgatttccattttgtcctccgccttaacagt 23650
Score = 54.0 bits (27), Expect = 6e-04
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 304 tcaaactgatggaggctgttggctagactcgcggaagctgccttgtcaccg 354
||||||| ||||||||| ||||||| || | |||||||||||||||||||
Sbjct: 23853 tcaaacttatggaggctattggctaaaccggaggaagctgccttgtcaccg 23903
Score = 50.1 bits (25), Expect = 0.009
Identities = 73/89 (82%)
Strand = Plus / Plus
Query: 571 tctttctgataaactcaacaatctttctctggatgtccctgtattgggataggcttgttg 630
||||||| ||||||||||| ||||||||||| | |||||||| ||| | ||| ||||
Sbjct: 25857 tctttctaataaactcaactatctttctctgtgtatccctgtaatggatcatgctcgttg 25916
Query: 631 ggttcacctgcacttcctgtgtgctttcc 659
||||| ||| |||| ||||||||||||
Sbjct: 25917 ggttcgactggccttcttgtgtgctttcc 25945
Score = 48.1 bits (24), Expect = 0.037
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 475 aggaacattttgttcagtaagatcatcaggaacaggagttttcgtttt 522
||||| || |||||||| ||||||||||||||||| ||||| |||||
Sbjct: 25652 aggaaaatcttgttcagcgagatcatcaggaacaggggtttttgtttt 25699
>dbj|AP007226.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBb0036B04
Length = 136159
Score = 61.9 bits (31), Expect = 2e-06
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 97 cctacacattaaccatcgatttccattttgtcctccggctttacagt 143
|||||| |||||| ||||||||||||||||||||||| ||| |||||
Sbjct: 111642 cctacaaattaactatcgatttccattttgtcctccgccttaacagt 111688
Score = 54.0 bits (27), Expect = 6e-04
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 304 tcaaactgatggaggctgttggctagactcgcggaagctgccttgtcaccg 354
||||||| ||||||||| ||||||| || | |||||||||||||||||||
Sbjct: 111891 tcaaacttatggaggctattggctaaaccggaggaagctgccttgtcaccg 111941
Score = 50.1 bits (25), Expect = 0.009
Identities = 73/89 (82%)
Strand = Plus / Plus
Query: 571 tctttctgataaactcaacaatctttctctggatgtccctgtattgggataggcttgttg 630
||||||| ||||||||||| ||||||||||| | |||||||| ||| | ||| ||||
Sbjct: 113895 tctttctaataaactcaactatctttctctgtgtatccctgtaatggatcatgctcgttg 113954
Query: 631 ggttcacctgcacttcctgtgtgctttcc 659
||||| ||| |||| ||||||||||||
Sbjct: 113955 ggttcgactggccttcttgtgtgctttcc 113983
Score = 48.1 bits (24), Expect = 0.037
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 475 aggaacattttgttcagtaagatcatcaggaacaggagttttcgtttt 522
||||| || |||||||| ||||||||||||||||| ||||| |||||
Sbjct: 113690 aggaaaatcttgttcagcgagatcatcaggaacaggggtttttgtttt 113737
>gb|U93872.2 | Kaposi's sarcoma-associated herpesvirus glycoprotein M, DNA replication
protein, glycoprotein, DNA replication protein, FLICE
inhibitory protein and v-cyclin genes, complete cds, and
tegument protein gene, partial cds
Length = 133661
Score = 40.1 bits (20), Expect = 9.0
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 240 tttgggggtagcagcgccgt 259
||||||||||||||||||||
Sbjct: 56028 tttgggggtagcagcgccgt 56047
>emb|CR382130.1 | Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica
Length = 3633272
Score = 40.1 bits (20), Expect = 9.0
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 398 cacacatagattggtacaag 417
||||||||||||||||||||
Sbjct: 428016 cacacatagattggtacaag 427997
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,616,587
Number of Sequences: 3902068
Number of extensions: 5616587
Number of successful extensions: 102573
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102390
Number of HSP's gapped (non-prelim): 183
length of query: 659
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 636
effective length of database: 17,143,297,704
effective search space: 10903137339744
effective search space used: 10903137339744
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)