ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal6b24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY062186.1| Oryza sativa chromatin-remodeling factor CHD3 (PK... 74 6e-10
2dbj|AK065390.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 6e-10
3gb|AY062188.1|AY062187S2 Oryza sativa (indica cultivar-group) ch... 62 2e-06
4dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
5dbj|AP005919.3| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
6dbj|AP007226.1| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
7gb|AC129926.4| Homo sapiens chromosome 17, clone RP11-663N22, co... 42 2.3
8emb|CR378667.1| Photobacterium profundum SS9; segment 5/12 42 2.3
9gb|AC105282.5| Homo sapiens chromosome 18, clone RP11-452F20, co... 42 2.3
10gb|AC087297.13| Homo sapiens chromosome 17, clone RP11-362P24, c... 42 2.3
11gb|AC091189.4| Homo sapiens chromosome 8, clone RP11-606D13, com... 42 2.3
12gb|AC105226.4| Homo sapiens chromosome 8, clone RP11-970F14, com... 42 2.3
13gb|AC116553.2| Homo sapiens chromosome 16 clone RP11-43P5, compl... 42 2.3
14gb|AC019041.8| Homo sapiens BAC clone RP11-4K20 from 2, complete... 42 2.3
15gb|AC106785.3| Homo sapiens chromosome 16 clone RP11-352B15, com... 42 2.3
16gb|AC150385.2| Branchiostoma floridae clone CH302-101G3, complet... 40 9.0
17ref|XM_523395.1| PREDICTED: Pan troglodytes similar to RGD, leuc... 40 9.0
18gb|U93872.2| Kaposi's sarcoma-associated herpesvirus glycoprotei... 40 9.0
19gb|AE001389.2| Plasmodium falciparum 3D7 chromosome 2 section 26... 40 9.0
20gb|AF148805.2| Human herpesvirus 8 isolate GK18, complete genome 40 9.0
21emb|Z69384.1|CET11G6 Caenorhabditis elegans Cosmid T11G6, comple... 40 9.0
22emb|AL691463.2| Human DNA sequence from clone RP11-290H6 on chro... 40 9.0
23emb|BX572097.1| Prochlorococcus marinus MIT9313 complete genome;... 40 9.0
24emb|AL845465.2| Mouse DNA sequence from clone RP23-119B10 on chr... 40 9.0
25gb|AC091819.3| Homo sapiens chromosome 5 clone CTC-264O10, compl... 40 9.0
26gb|AC011395.5| Homo sapiens chromosome 5 clone CTB-187I2, comple... 40 9.0
27emb|AL928958.15| Mouse DNA sequence from clone RP23-344N23 on ch... 40 9.0
28gb|U75698.1|KSU75698 Kaposi's sarcoma-associated herpesvirus lon... 40 9.0
29gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1... 40 9.0
30emb|CR388150.14| Zebrafish DNA sequence from clone DKEY-115A2 in... 40 9.0
31gb|AC005273.1|AC005273 Homo sapiens chromosome 17, clone hRPK.87... 40 9.0
32emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB1... 40 9.0

>gb|AY062186.1| Oryza sativa chromatin-remodeling factor CHD3 (PKL) mRNA, complete
            cds
          Length = 4443

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 149/185 (80%), Gaps = 1/185 (0%)
 Strand = Plus / Minus

                                                                        
Query: 475  aggaacattttgttcagtaagatcatcaggaacaggagttttcgtttttatcacagcata 534
            ||||| || ||||||||  ||||||||||||||||| ||||| ||||| |||||||| ||
Sbjct: 3609 aggaaaatcttgttcagcgagatcatcaggaacaggggtttttgttttaatcacagcgta 3550

                                                                        
Query: 535  ttcaatgtccaagcatttttctagaatatggattcttctttctgataaactcaacaatct 594
            |||||  | ||| ||| | || | || ||||  || ||||||| ||||||||||| ||||
Sbjct: 3549 ttcaagattcaaacatctctccaaaagatggtatc-tctttctaataaactcaactatct 3491

                                                                        
Query: 595  ttctctggatgtccctgtattgggataggcttgttgggttcacctgcacttcctgtgtgc 654
            |||||||  | |||||||| |||   | ||| |||||||||  |||  |||| |||||||
Sbjct: 3490 ttctctgtgtatccctgtaatggatcatgctcgttgggttcgactggccttcttgtgtgc 3431

                 
Query: 655  tttcc 659
            |||||
Sbjct: 3430 tttcc 3426



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                           
Query: 97   cctacacattaaccatcgatttccattttgtcctccggctttacagt 143
            |||||| |||||| ||||||||||||||||||||||| ||| |||||
Sbjct: 4091 cctacaaattaactatcgatttccattttgtcctccgccttaacagt 4045



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                               
Query: 304  tcaaactgatggaggctgttggctagactcgcggaagctgccttgtcaccg 354
            ||||||| ||||||||| ||||||| ||  | |||||||||||||||||||
Sbjct: 3842 tcaaacttatggaggctattggctaaaccggaggaagctgccttgtcaccg 3792



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>dbj|AK065390.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013023A02, full
           insert sequence
          Length = 1605

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 149/185 (80%), Gaps = 1/185 (0%)
 Strand = Plus / Minus

                                                                       
Query: 475 aggaacattttgttcagtaagatcatcaggaacaggagttttcgtttttatcacagcata 534
           ||||| || ||||||||  ||||||||||||||||| ||||| ||||| |||||||| ||
Sbjct: 853 aggaaaatcttgttcagcgagatcatcaggaacaggggtttttgttttaatcacagcgta 794

                                                                       
Query: 535 ttcaatgtccaagcatttttctagaatatggattcttctttctgataaactcaacaatct 594
           |||||  | ||| ||| | || | || ||||  || ||||||| ||||||||||| ||||
Sbjct: 793 ttcaagattcaaacatctctccaaaagatggtatc-tctttctaataaactcaactatct 735

                                                                       
Query: 595 ttctctggatgtccctgtattgggataggcttgttgggttcacctgcacttcctgtgtgc 654
           |||||||  | |||||||| |||   | ||| |||||||||  |||  |||| |||||||
Sbjct: 734 ttctctgtgtatccctgtaatggatcatgctcgttgggttcgactggccttcttgtgtgc 675

                
Query: 655 tttcc 659
           |||||
Sbjct: 674 tttcc 670



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                           
Query: 97   cctacacattaaccatcgatttccattttgtcctccggctttacagt 143
            |||||| |||||| ||||||||||||||||||||||| ||| |||||
Sbjct: 1335 cctacaaattaactatcgatttccattttgtcctccgccttaacagt 1289



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                               
Query: 304  tcaaactgatggaggctgttggctagactcgcggaagctgccttgtcaccg 354
            ||||||| ||||||||| ||||||| ||  | |||||||||||||||||||
Sbjct: 1086 tcaaacttatggaggctattggctaaaccggaggaagctgccttgtcaccg 1036



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>gb|AY062188.1|AY062187S2 Oryza sativa (indica cultivar-group) chromatin-remodeling factor
           CHD3 (PKL) gene, exon 27 and complete cds
          Length = 1007

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                          
Query: 97  cctacacattaaccatcgatttccattttgtcctccggctttacagt 143
           |||||| |||||| ||||||||||||||||||||||| ||| |||||
Sbjct: 56  cctacaaattaactatcgatttccattttgtcctccgccttaacagt 10



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 43/47 (91%)
 Strand = Plus / Plus

                                                              
Query: 97      cctacacattaaccatcgatttccattttgtcctccggctttacagt 143
               |||||| |||||| ||||||||||||||||||||||| ||| |||||
Sbjct: 4178383 cctacaaattaactatcgatttccattttgtcctccgccttaacagt 4178429



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 45/51 (88%)
 Strand = Plus / Plus

                                                                  
Query: 304     tcaaactgatggaggctgttggctagactcgcggaagctgccttgtcaccg 354
               ||||||| ||||||||| ||||||| ||  | |||||||||||||||||||
Sbjct: 4178632 tcaaacttatggaggctattggctaaaccggaggaagctgccttgtcaccg 4178682



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 73/89 (82%)
 Strand = Plus / Plus

                                                                           
Query: 571     tctttctgataaactcaacaatctttctctggatgtccctgtattgggataggcttgttg 630
               ||||||| ||||||||||| |||||||||||  | |||||||| |||   | ||| ||||
Sbjct: 4180636 tctttctaataaactcaactatctttctctgtgtatccctgtaatggatcatgctcgttg 4180695

                                            
Query: 631     ggttcacctgcacttcctgtgtgctttcc 659
               |||||  |||  |||| ||||||||||||
Sbjct: 4180696 ggttcgactggccttcttgtgtgctttcc 4180724



 Score = 48.1 bits (24), Expect = 0.037
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                               
Query: 475     aggaacattttgttcagtaagatcatcaggaacaggagttttcgtttt 522
               ||||| || ||||||||  ||||||||||||||||| ||||| |||||
Sbjct: 4180431 aggaaaatcttgttcagcgagatcatcaggaacaggggtttttgtttt 4180478



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>dbj|AP005919.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0554A06
          Length = 165311

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 43/47 (91%)
 Strand = Plus / Plus

                                                            
Query: 97    cctacacattaaccatcgatttccattttgtcctccggctttacagt 143
             |||||| |||||| ||||||||||||||||||||||| ||| |||||
Sbjct: 23604 cctacaaattaactatcgatttccattttgtcctccgccttaacagt 23650



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 45/51 (88%)
 Strand = Plus / Plus

                                                                
Query: 304   tcaaactgatggaggctgttggctagactcgcggaagctgccttgtcaccg 354
             ||||||| ||||||||| ||||||| ||  | |||||||||||||||||||
Sbjct: 23853 tcaaacttatggaggctattggctaaaccggaggaagctgccttgtcaccg 23903



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 73/89 (82%)
 Strand = Plus / Plus

                                                                         
Query: 571   tctttctgataaactcaacaatctttctctggatgtccctgtattgggataggcttgttg 630
             ||||||| ||||||||||| |||||||||||  | |||||||| |||   | ||| ||||
Sbjct: 25857 tctttctaataaactcaactatctttctctgtgtatccctgtaatggatcatgctcgttg 25916

                                          
Query: 631   ggttcacctgcacttcctgtgtgctttcc 659
             |||||  |||  |||| ||||||||||||
Sbjct: 25917 ggttcgactggccttcttgtgtgctttcc 25945



 Score = 48.1 bits (24), Expect = 0.037
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                             
Query: 475   aggaacattttgttcagtaagatcatcaggaacaggagttttcgtttt 522
             ||||| || ||||||||  ||||||||||||||||| ||||| |||||
Sbjct: 25652 aggaaaatcttgttcagcgagatcatcaggaacaggggtttttgtttt 25699



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>dbj|AP007226.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBb0036B04
          Length = 136159

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 43/47 (91%)
 Strand = Plus / Plus

                                                             
Query: 97     cctacacattaaccatcgatttccattttgtcctccggctttacagt 143
              |||||| |||||| ||||||||||||||||||||||| ||| |||||
Sbjct: 111642 cctacaaattaactatcgatttccattttgtcctccgccttaacagt 111688



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 45/51 (88%)
 Strand = Plus / Plus

                                                                 
Query: 304    tcaaactgatggaggctgttggctagactcgcggaagctgccttgtcaccg 354
              ||||||| ||||||||| ||||||| ||  | |||||||||||||||||||
Sbjct: 111891 tcaaacttatggaggctattggctaaaccggaggaagctgccttgtcaccg 111941



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 73/89 (82%)
 Strand = Plus / Plus

                                                                          
Query: 571    tctttctgataaactcaacaatctttctctggatgtccctgtattgggataggcttgttg 630
              ||||||| ||||||||||| |||||||||||  | |||||||| |||   | ||| ||||
Sbjct: 113895 tctttctaataaactcaactatctttctctgtgtatccctgtaatggatcatgctcgttg 113954

                                           
Query: 631    ggttcacctgcacttcctgtgtgctttcc 659
              |||||  |||  |||| ||||||||||||
Sbjct: 113955 ggttcgactggccttcttgtgtgctttcc 113983



 Score = 48.1 bits (24), Expect = 0.037
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                              
Query: 475    aggaacattttgttcagtaagatcatcaggaacaggagttttcgtttt 522
              ||||| || ||||||||  ||||||||||||||||| ||||| |||||
Sbjct: 113690 aggaaaatcttgttcagcgagatcatcaggaacaggggtttttgtttt 113737



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>gb|AC129926.4| Homo sapiens chromosome 17, clone RP11-663N22, complete sequence
          Length = 208551

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 513   ttttcgtttttatcacagcatattc 537
             |||||||||||||||||| ||||||
Sbjct: 69196 ttttcgtttttatcacagaatattc 69220



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 516   tcgtttttatcacagcatattcaa 539
             ||||||||||||||| ||||||||
Sbjct: 95179 tcgtttttatcacaggatattcaa 95202



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>emb|CR378667.1| Photobacterium profundum SS9; segment 5/12
          Length = 349080

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 471   ccataggaacattttgttcagtaag 495
             |||||||| ||||||||||||||||
Sbjct: 68924 ccataggatcattttgttcagtaag 68900



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>gb|AC105282.5| Homo sapiens chromosome 18, clone RP11-452F20, complete sequence
          Length = 167258

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 621   aggcttgttgggttcacctgc 641
             |||||||||||||||||||||
Sbjct: 92414 aggcttgttgggttcacctgc 92394



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>gb|AC087297.13| Homo sapiens chromosome 17, clone RP11-362P24, complete sequence
          Length = 179026

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 513   ttttcgtttttatcacagcatattc 537
             |||||||||||||||||| ||||||
Sbjct: 54305 ttttcgtttttatcacagaatattc 54329



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 516   tcgtttttatcacagcatattcaa 539
             ||||||||||||||| ||||||||
Sbjct: 80289 tcgtttttatcacaggatattcaa 80312



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>gb|AC091189.4| Homo sapiens chromosome 8, clone RP11-606D13, complete sequence
          Length = 174458

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 518   gtttttatcacagcatattca 538
             |||||||||||||||||||||
Sbjct: 74989 gtttttatcacagcatattca 74969



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>gb|AC105226.4| Homo sapiens chromosome 8, clone RP11-970F14, complete sequence
          Length = 107318

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 518   gtttttatcacagcatattca 538
             |||||||||||||||||||||
Sbjct: 80742 gtttttatcacagcatattca 80722



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>gb|AC116553.2| Homo sapiens chromosome 16 clone RP11-43P5, complete sequence
          Length = 173692

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 518    gtttttatcacagcatattca 538
              |||||||||||||||||||||
Sbjct: 167999 gtttttatcacagcatattca 167979



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>gb|AC019041.8| Homo sapiens BAC clone RP11-4K20 from 2, complete sequence
          Length = 183358

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 523    tatcacagcatattcaatgtc 543
              |||||||||||||||||||||
Sbjct: 134413 tatcacagcatattcaatgtc 134393



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>gb|AC106785.3| Homo sapiens chromosome 16 clone RP11-352B15, complete sequence
          Length = 177461

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 518   gtttttatcacagcatattca 538
             |||||||||||||||||||||
Sbjct: 92732 gtttttatcacagcatattca 92752



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>gb|AC150385.2| Branchiostoma floridae clone CH302-101G3, complete sequence
          Length = 121661

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 632   gttcacctgcacttcctgtg 651
             ||||||||||||||||||||
Sbjct: 46024 gttcacctgcacttcctgtg 46043



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>ref|XM_523395.1| PREDICTED: Pan troglodytes similar to RGD, leucine-rich repeat,
            tropomodulin and proline-rich containing protein
            (LOC468003), mRNA
          Length = 4032

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 314  ggaggctgttggctagactcgcgg 337
            ||||||||||||||| ||||||||
Sbjct: 1525 ggaggctgttggctacactcgcgg 1502



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>gb|U93872.2| Kaposi's sarcoma-associated herpesvirus glycoprotein M, DNA replication
             protein, glycoprotein, DNA replication protein, FLICE
             inhibitory protein and v-cyclin genes, complete cds, and
             tegument protein gene, partial cds
          Length = 133661

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 240   tttgggggtagcagcgccgt 259
             ||||||||||||||||||||
Sbjct: 56028 tttgggggtagcagcgccgt 56047



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>gb|AE001389.2| Plasmodium falciparum 3D7 chromosome 2 section 26 of 73 of the
            complete sequence
          Length = 10129

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 493  aagatcatcaggaacaggag 512
            ||||||||||||||||||||
Sbjct: 3674 aagatcatcaggaacaggag 3655



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>gb|AF148805.2| Human herpesvirus 8 isolate GK18, complete genome
          Length = 137969

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 240   tttgggggtagcagcgccgt 259
             ||||||||||||||||||||
Sbjct: 55828 tttgggggtagcagcgccgt 55847



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>emb|Z69384.1|CET11G6 Caenorhabditis elegans Cosmid T11G6, complete sequence
          Length = 29461

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 289   tcctcacatactttctcaaa 308
             ||||||||||||||||||||
Sbjct: 12995 tcctcacatactttctcaaa 12976



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>emb|AL691463.2| Human DNA sequence from clone RP11-290H6 on chromosome 10, complete
            sequence
          Length = 12679

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 390  aagcacaccacacatagatt 409
            ||||||||||||||||||||
Sbjct: 6491 aagcacaccacacatagatt 6510



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>emb|BX572097.1| Prochlorococcus marinus MIT9313 complete genome; segment 3/7
          Length = 349823

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 607    ccctgtattgggataggctt 626
              ||||||||||||||||||||
Sbjct: 124100 ccctgtattgggataggctt 124081



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>emb|AL845465.2| Mouse DNA sequence from clone RP23-119B10 on chromosome 11, complete
             sequence
          Length = 37402

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 380   cgctgtcttcaagcacacca 399
             ||||||||||||||||||||
Sbjct: 18304 cgctgtcttcaagcacacca 18323



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>gb|AC091819.3| Homo sapiens chromosome 5 clone CTC-264O10, complete sequence
          Length = 118603

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 581   aaactcaacaatctttctct 600
             ||||||||||||||||||||
Sbjct: 46183 aaactcaacaatctttctct 46202



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>gb|AC011395.5| Homo sapiens chromosome 5 clone CTB-187I2, complete sequence
          Length = 96489

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 581   aaactcaacaatctttctct 600
             ||||||||||||||||||||
Sbjct: 32137 aaactcaacaatctttctct 32118



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>emb|AL928958.15| Mouse DNA sequence from clone RP23-344N23 on chromosome 2, complete
             sequence
          Length = 163351

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 385   tcttcaagcacaccacacat 404
             ||||||||||||||||||||
Sbjct: 22444 tcttcaagcacaccacacat 22463



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>gb|U75698.1|KSU75698 Kaposi's sarcoma-associated herpesvirus long unique region, 80 putative
             ORF's and kaposin gene, complete cds
          Length = 137508

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 240   tttgggggtagcagcgccgt 259
             ||||||||||||||||||||
Sbjct: 55729 tttgggggtagcagcgccgt 55748



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>gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome
          Length = 1751080

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 430    tctcaacacttcactgatatctgg 453
              |||||||||||||||||| |||||
Sbjct: 600016 tctcaacacttcactgatttctgg 600039



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>emb|CR388150.14| Zebrafish DNA sequence from clone DKEY-115A2 in linkage group 3,
             complete sequence
          Length = 170964

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 512   gttttcgtttttatcacagcatat 535
             |||| |||||||||||||||||||
Sbjct: 60270 gtttacgtttttatcacagcatat 60293



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>gb|AC005273.1|AC005273 Homo sapiens chromosome 17, clone hRPK.879_D_6, complete sequence
          Length = 122250

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 633   ttcacctgcacttcctgtgt 652
             ||||||||||||||||||||
Sbjct: 42373 ttcacctgcacttcctgtgt 42392



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>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica
          Length = 3633272

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 398    cacacatagattggtacaag 417
              ||||||||||||||||||||
Sbjct: 428016 cacacatagattggtacaag 427997


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,616,587
Number of Sequences: 3902068
Number of extensions: 5616587
Number of successful extensions: 102573
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102390
Number of HSP's gapped (non-prelim): 183
length of query: 659
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 636
effective length of database: 17,143,297,704
effective search space: 10903137339744
effective search space used: 10903137339744
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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