ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal6a23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RHAAB_BACSK (Q5WL39) RhaA/rhaB bifunctional enzyme [Includes: Rh... 30 2.7
2DMWD_MOUSE (Q08274) Dystrophia myotonica WD repeat-containing pr... 29 4.6
3KHSE_SULTO (Q975A7) Homoserine kinase (EC 2.7.1.39) (HSK) (HK) 28 7.9

>RHAAB_BACSK (Q5WL39) RhaA/rhaB bifunctional enzyme [Includes: Rhamnulokinase|
           (EC 2.7.1.5) (Rhamnulose kinase); L-rhamnose isomerase
           (EC 5.3.1.14)]
          Length = 894

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 21/53 (39%), Positives = 23/53 (43%)
 Frame = -1

Query: 288 RRAVRLAKAVTYIWPHSRELHQSSRGIGVAIXRS*CGTSVGAAFHRVN*HPES 130
           R  VR A  VTY  P   E H SSR     +     G  V AAF +V   P S
Sbjct: 451 RALVRTAFPVTYFLPQRSESHVSSRFESAKVQYEQLGIDVEAAFAKVKQVPIS 503



to top

>DMWD_MOUSE (Q08274) Dystrophia myotonica WD repeat-containing protein|
           (Dystrophia myotonica-containing WD repeat motif
           protein) (DMR-N9 protein)
          Length = 650

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 353 FSPSGRHVLCIGKDGSL 303
           FSP GRH+ C+ +DG L
Sbjct: 274 FSPDGRHLACVSQDGCL 290



to top

>KHSE_SULTO (Q975A7) Homoserine kinase (EC 2.7.1.39) (HSK) (HK)|
          Length = 306

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = -3

Query: 430 N*IERLXSSRRILVSVGIR*SICSSGSPHQD 338
           N I +L  SR+ LV+  ++  I SSGSPH D
Sbjct: 104 NEIFKLNLSRQELVNFAMKGEIASSGSPHPD 134


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,384,109
Number of Sequences: 219361
Number of extensions: 1217036
Number of successful extensions: 2092
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2092
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top