| Clone Name | rbaal6a16 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | MT21_ORYSA (P94029) Metallothionein-like protein type 2 | 36 | 0.034 | 2 | SOX14_DROME (P40656) Putative transcription factor SOX-14 | 30 | 3.2 | 3 | SMG7_MOUSE (Q5RJH6) Protein SMG7 (SMG-7 homolog) (EST1-like prot... | 28 | 7.1 | 4 | FOXL2_HUMAN (P58012) Forkhead box protein L2 | 28 | 7.1 | 5 | MT1_MAIZE (P30571) Metallothionein-like protein 1 (MT-1) | 28 | 7.1 | 6 | VST2_HEVME (Q03500) Structural protein 2 precursor | 28 | 9.2 |
|---|
>MT21_ORYSA (P94029) Metallothionein-like protein type 2| Length = 82 Score = 36.2 bits (82), Expect = 0.034 Identities = 20/38 (52%), Positives = 24/38 (63%) Frame = -2 Query: 394 MYPGMDEGVSTTATSSQALVMGVASSKGNGPSFEAAAA 281 MYP M E V+TT Q ++MGVA SKG+ EA AA Sbjct: 25 MYPEMAEEVTTT----QTVIMGVAPSKGHAEGLEAGAA 58
>SOX14_DROME (P40656) Putative transcription factor SOX-14| Length = 472 Score = 29.6 bits (65), Expect = 3.2 Identities = 17/63 (26%), Positives = 26/63 (41%) Frame = +3 Query: 195 PSPCVDSTDHLQVHGLQVQLGPHLHPPFSAAAASNEGPLPLEDATPMTRAWEEVAVVLTP 374 P+P DST PH PPFS + + P P TP + + A + P Sbjct: 42 PAPKADST-------------PHTLPPFSPSPSPASSPSPAPAQTPGAQKTQSQAAITHP 88 Query: 375 SSI 383 +++ Sbjct: 89 AAV 91
>SMG7_MOUSE (Q5RJH6) Protein SMG7 (SMG-7 homolog) (EST1-like protein C)| Length = 1138 Score = 28.5 bits (62), Expect = 7.1 Identities = 16/41 (39%), Positives = 20/41 (48%) Frame = +3 Query: 189 SMPSPCVDSTDHLQVHGLQVQLGPHLHPPFSAAAASNEGPL 311 S+P + ST H G QVQ G H P+S S GP+ Sbjct: 641 SVPGTFLQSTAHSPA-GNQVQAGKQSHIPYSQQRPSGPGPM 680
>FOXL2_HUMAN (P58012) Forkhead box protein L2| Length = 376 Score = 28.5 bits (62), Expect = 7.1 Identities = 23/68 (33%), Positives = 26/68 (38%) Frame = +3 Query: 186 PSMPSPCVDSTDHLQVHGLQVQLGPHLHPPFSAAAASNEGPLPLEDATPMTRAWEEVAVV 365 P+ P P H H L P PP AAA G L A+P T A A Sbjct: 281 PAAPPPPPHPHPHPHAHHLHAAAAPPPAPPHHGAAAPPPG--QLSPASPATAAPPAPA-- 336 Query: 366 LTPSSIPG 389 P+S PG Sbjct: 337 --PTSAPG 342
>MT1_MAIZE (P30571) Metallothionein-like protein 1 (MT-1)| Length = 76 Score = 28.5 bits (62), Expect = 7.1 Identities = 15/38 (39%), Positives = 21/38 (55%) Frame = -2 Query: 391 YPGMDEGVSTTATSSQALVMGVASSKGNGPSFEAAAAE 278 YP ++E T+ + +V+GVA K P F AAAE Sbjct: 21 YPDLEE---TSTAAQPTVVLGVAPEKKAAPEFVEAAAE 55
>VST2_HEVME (Q03500) Structural protein 2 precursor| Length = 659 Score = 28.1 bits (61), Expect = 9.2 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 4/38 (10%) Frame = +3 Query: 258 PHLHP--PFS--AAAASNEGPLPLEDATPMTRAWEEVA 359 P++HP PF+ AAAS GP + A P+ W + A Sbjct: 54 PYIHPTNPFAPDVAAASGSGPRLRQPARPLGSTWRDQA 91 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,134,714 Number of Sequences: 219361 Number of extensions: 831115 Number of successful extensions: 2335 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 2280 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2334 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2395157885 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)