ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal5l13 |
|---|---|
| Clone Library Name | barley_pub |
>emb|BX571952.13| Zebrafish DNA sequence from clone DKEY-35E8 in linkage group 11, complete sequence Length = 175925 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 145 gatttatgacatgttttgttg 165 ||||||||||||||||||||| Sbjct: 115906 gatttatgacatgttttgttg 115886
>emb|BX936464.7| Zebrafish DNA sequence from clone DKEY-246O4 in linkage group 18, complete sequence Length = 167114 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 145 gatttatgacatgttttgttg 165 ||||||||||||||||||||| Sbjct: 59935 gatttatgacatgttttgttg 59955
>emb|BX004819.11| Zebrafish DNA sequence from clone CH211-208B16 in linkage group 8, complete sequence Length = 234864 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 145 gatttatgacatgttttgttg 165 ||||||||||||||||||||| Sbjct: 213157 gatttatgacatgttttgttg 213177
>gb|AC165229.7| Mus musculus chromosome 1, clone RP23-47K10, complete sequence Length = 218929 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 acatcccttattaaatacat 72 |||||||||||||||||||| Sbjct: 117537 acatcccttattaaatacat 117556
>ref|NM_183504.1| Oryza sativa (japonica cultivar-group), mRNA Length = 696 Score = 40.1 bits (20), Expect = 9.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 575 tctatgccaattctcgagctagaggccc 602 |||||||||||||| |||||| |||||| Sbjct: 656 tctatgccaattcttgagctaaaggccc 629
>ref|XM_483478.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2234 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 671 tcttcctcatggatggtgat 690 |||||||||||||||||||| Sbjct: 2093 tcttcctcatggatggtgat 2112
>gb|AC004227.1| Homo sapiens chromosome 5, P1 clone 356a8 (LBNL H32), complete sequence Length = 72941 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 97 ccaacattgtgaaagtgcatctct 120 |||||||||||||||| ||||||| Sbjct: 6171 ccaacattgtgaaagtccatctct 6148
>ref|XM_454984.1| Kluyveromyces lactis NRRL Y-1140, KLLA0E22968g predicted mRNA Length = 333 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 653 ttgatgatctcagcaccttc 672 |||||||||||||||||||| Sbjct: 326 ttgatgatctcagcaccttc 307
>gb|AC144706.2| Danio rerio clone CH211-164M18, complete sequence Length = 149960 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 145 gatttatgacatgttttgttgcca 168 ||||||||||| |||||||||||| Sbjct: 80278 gatttatgacaagttttgttgcca 80301
>emb|AL772400.3| Human DNA sequence from clone RP11-540N4 on chromosome X Contains the 3' end of the PRPS1 gene for phosphoribosyl pyrophosphate synthetase 1 (PRSI), complete sequence Length = 74714 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 97 ccaacattgtgaaagtgcatctct 120 |||||||||||||| ||||||||| Sbjct: 66095 ccaacattgtgaaactgcatctct 66072
>emb|AL590708.18| Human DNA sequence from clone RP11-395P17 on chromosome 9 Contains the PCSCL gene for likely ortholog of rat peroxisomal Ca-dependent solute carrier-like protein (KIAA1896), the PTGES2 gene for prostaglandin E synthase 2 (GBF1, GBF-1, C9orf15, FLJ14038), the LCN2 gene for lipocalin 2 (oncogene 24p3) (NGAL), the C9orf16 gene for chromosome 9 open reading frame 16 (MGC4639, EST00098, FLJ12823), the CIZ1 gene for Cip1-interacting zinc finger protein (LSFR1), the DNM1 gene for dynamin 1 (DNM), the GOLGA2 gene for golgi autoantigen, golgin subfamily a, 2 (GM130, MGC20672), the gene for a novel protein and seven CpG islands, complete sequence Length = 194056 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 97 ccaacattgtgaaagtgcatctct 120 ||||||| |||||||||||||||| Sbjct: 44396 ccaacatggtgaaagtgcatctct 44419
>emb|AL158830.17| Human DNA sequence from clone RP11-421H8 on chromosome 9 Contains the 3' end of the RECK gene for reversion-inducing-cysteine-rich protein with kazal motifs (ST15, hRECK), the C9orf19 gene for ,chromosome 9 open reading frame 19 (GAPR-1, GLIPR2), the CCIN gene for calicin, the CLTA gene for clathrin, light polypeptide (LCA), the gene for UDP-N-acetylglucosamine-2-epimerase/N-acetylmannosamine kinase (NM, DMRV, IBM2, GLCNE)(GNE) and five CpG islands, complete sequence Length = 191436 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 660 tctcagcaccttcttcctca 679 |||||||||||||||||||| Sbjct: 11941 tctcagcaccttcttcctca 11960
>emb|AL158072.9| Human DNA sequence from clone RP11-30O14 on chromosome 9p21.1-21.3, complete sequence Length = 200840 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 660 tctcagcaccttcttcctcatgga 683 ||||||||||| |||||||||||| Sbjct: 69556 tctcagcacctccttcctcatgga 69533
>emb|AL121782.9|HSJ585I14 Human DNA sequence from clone RP4-585I14 on chromosome 20 Contains the 3' end of the C20orf13 gene for chromosome 20 open reading frame 13 and the GAPDP2 gene for glyceraldehyde-3-phosphate dehydrogenase pseudogene 2, complete sequence Length = 144781 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 352 actccacatcacttggtctt 371 |||||||||||||||||||| Sbjct: 74781 actccacatcacttggtctt 74762
>emb|CR382125.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome E of strain NRRL Y-1140 of Kluyveromyces lactis Length = 2234072 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 653 ttgatgatctcagcaccttc 672 |||||||||||||||||||| Sbjct: 2038736 ttgatgatctcagcaccttc 2038717
>emb|AL928938.3| Zebrafish DNA sequence from clone BUSM1-64D20 in linkage group 12 Contains the zebrafish nog3 gene for noggin 3, two novel genes for protein with a type I phosphodiesterase/nucleotide pyrophosphatase domain and a CpG island, complete sequence Length = 96976 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 145 gatttatgacatgttttgttgcca 168 ||||||||||| |||||||||||| Sbjct: 96611 gatttatgacaagttttgttgcca 96634
>dbj|AK061879.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-E10, full insert sequence Length = 1355 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 671 tcttcctcatggatggtgat 690 |||||||||||||||||||| Sbjct: 1264 tcttcctcatggatggtgat 1283
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 ttggtcttgctcaacccaag 383 |||||||||||||||||||| Sbjct: 3476270 ttggtcttgctcaacccaag 3476289
>gb|AY119564.1| Drosophila melanogaster HL01062 full insert cDNA Length = 2937 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 621 acattttttggccagcaaca 640 |||||||||||||||||||| Sbjct: 156 acattttttggccagcaaca 175
>gb|AC010025.6| Drosophila melanogaster 3L BAC RPCI98-20B1 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 175679 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 621 acattttttggccagcaaca 640 |||||||||||||||||||| Sbjct: 38704 acattttttggccagcaaca 38685
>ref|NM_140348.1| Drosophila melanogaster CG10960-RB, transcript variant B (CG10960), mRNA Length = 2914 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 621 acattttttggccagcaaca 640 |||||||||||||||||||| Sbjct: 156 acattttttggccagcaaca 175
>gb|DP000003.1| Atelerix albiventris target 1 genomic scaffold Length = 2136267 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 680 tggatggtgatcacctcatg 699 |||||||||||||||||||| Sbjct: 1866642 tggatggtgatcacctcatg 1866661
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 671 tcttcctcatggatggtgat 690 |||||||||||||||||||| Sbjct: 26438090 tcttcctcatggatggtgat 26438109
>gb|AC130784.3| Atelerix albiventris clone LB4-112D1, complete sequence Length = 166122 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 680 tggatggtgatcacctcatg 699 |||||||||||||||||||| Sbjct: 92652 tggatggtgatcacctcatg 92671
>gb|AF296831.1|F18O9 Arabidopsis thaliana BAC F18O9 Length = 95463 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 catcacttggtcttgctcaa 377 |||||||||||||||||||| Sbjct: 7573 catcacttggtcttgctcaa 7592
>gb|CP000084.1| Candidatus Pelagibacter ubique HTCC1062, complete genome Length = 1308759 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 atttatgacatgttttgttg 165 |||||||||||||||||||| Sbjct: 1176573 atttatgacatgttttgttg 1176554
>gb|DQ246442.1| Pseudomonas syringae pv. tagetis strain LMG5090 hrp/hrc gene cluster, complete sequence Length = 23154 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 628 ttggccagcaacagagtgat 647 |||||||||||||||||||| Sbjct: 20147 ttggccagcaacagagtgat 20128
>dbj|AP003920.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1789_C07 Length = 138944 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 671 tcttcctcatggatggtgat 690 |||||||||||||||||||| Sbjct: 87642 tcttcctcatggatggtgat 87661
>dbj|AP004015.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1770_H02 Length = 170648 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 671 tcttcctcatggatggtgat 690 |||||||||||||||||||| Sbjct: 167671 tcttcctcatggatggtgat 167690
>dbj|AB046431.1| Arabidopsis thaliana DNA, chromosome 5 centromere region, clone:T3B16 Length = 85962 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 catcacttggtcttgctcaa 377 |||||||||||||||||||| Sbjct: 36750 catcacttggtcttgctcaa 36769
>emb|X54688.1|TAAGCNN35 Wheat alpha-gliadin pseudogene (clone CNN35) Length = 3573 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 ttacatgatgagaggagaac 261 |||||||||||||||||||| Sbjct: 2150 ttacatgatgagaggagaac 2131
>dbj|AK072408.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023083H19, full insert sequence Length = 2233 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 671 tcttcctcatggatggtgat 690 |||||||||||||||||||| Sbjct: 2092 tcttcctcatggatggtgat 2111
>emb|BX511178.6| Zebrafish DNA sequence from clone DKEY-221H15 in linkage group 20, complete sequence Length = 187362 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 142 gacgatttatgacatgttttgttg 165 |||||||||||||| ||||||||| Sbjct: 136024 gacgatttatgacaagttttgttg 136001
>gb|AY912572.1| Uncultured forest soil bacterium clone DUNnif181 dinitrogenase reductase (nifH) gene, partial cds Length = 355 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 666 caccttcttcctcatggatg 685 |||||||||||||||||||| Sbjct: 46 caccttcttcctcatggatg 27
>gb|AE003540.3| Drosophila melanogaster chromosome 3L, section 45 of 83 of the complete sequence Length = 297381 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 621 acattttttggccagcaaca 640 |||||||||||||||||||| Sbjct: 255789 acattttttggccagcaaca 255770
>emb|BX470069.10| Zebrafish DNA sequence from clone RP71-22K7 in linkage group 12, complete sequence Length = 169641 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 145 gatttatgacatgttttgttgcca 168 ||||||||||| |||||||||||| Sbjct: 60061 gatttatgacaagttttgttgcca 60084
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 ttggtcttgctcaacccaag 383 |||||||||||||||||||| Sbjct: 3472003 ttggtcttgctcaacccaag 3472022
>emb|AL935268.6| Zebrafish DNA sequence from clone CH211-199H23 in linkage group 12, complete sequence Length = 206438 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 145 gatttatgacatgttttgttgcca 168 ||||||||||| |||||||||||| Sbjct: 89116 gatttatgacaagttttgttgcca 89139
>gb|AC134445.3| Mus musculus BAC clone RP24-170M15 from 6, complete sequence Length = 165568 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 cttccaacattgtgaaagtg 113 |||||||||||||||||||| Sbjct: 27363 cttccaacattgtgaaagtg 27382
>gb|AC133599.3| Mus musculus BAC clone RP24-390N10 from 6, complete sequence Length = 185830 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 cttccaacattgtgaaagtg 113 |||||||||||||||||||| Sbjct: 4309 cttccaacattgtgaaagtg 4290
>emb|AL672182.18| Mouse DNA sequence from clone RP23-293I3 on chromosome 11, complete sequence Length = 211363 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 tacatgatgagaggagaaca 262 |||||||||||||||||||| Sbjct: 24198 tacatgatgagaggagaaca 24179
>gb|L77060.1|HUM32DC97Z Homo sapiens (subclone 2_b2 from P1 H32) DNA sequence Length = 4573 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 97 ccaacattgtgaaagtgcatctct 120 |||||||||||||||| ||||||| Sbjct: 2317 ccaacattgtgaaagtccatctct 2294 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,157,133 Number of Sequences: 3902068 Number of extensions: 6157133 Number of successful extensions: 149714 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 149557 Number of HSP's gapped (non-prelim): 157 length of query: 711 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 688 effective length of database: 17,143,297,704 effective search space: 11794588820352 effective search space used: 11794588820352 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
