ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal6a12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EMS_DROME (P18488) Homeotic protein empty spiracles 32 2.4
2RHAAB_BACSK (Q5WL39) RhaA/rhaB bifunctional enzyme [Includes: Rh... 31 4.1

>EMS_DROME (P18488) Homeotic protein empty spiracles|
          Length = 497

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
 Frame = +1

Query: 460 PFYSVAPPAHQPPMPWRHPRLS*LSHLALRPSHPRWFSWLSQL--SHLVLQPWHP 618
           P + +APPAH  P P  H +     HL     HP        +   HL++Q  HP
Sbjct: 80  PHHLMAPPAHGLPYPHPHAQQQQQQHLQAPHPHPHLSPAQQHVLHQHLLMQHQHP 134



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>RHAAB_BACSK (Q5WL39) RhaA/rhaB bifunctional enzyme [Includes: Rhamnulokinase|
           (EC 2.7.1.5) (Rhamnulose kinase); L-rhamnose isomerase
           (EC 5.3.1.14)]
          Length = 894

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 21/53 (39%), Positives = 24/53 (45%)
 Frame = -2

Query: 332 RRAVRLAKAVTYIWPHSRELHQSSRGIGVAIKRS*CGTSVGAAFHRVN*HPES 174
           R  VR A  VTY  P   E H SSR     ++    G  V AAF +V   P S
Sbjct: 451 RALVRTAFPVTYFLPQRSESHVSSRFESAKVQYEQLGIDVEAAFAKVKQVPIS 503


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,252,845
Number of Sequences: 219361
Number of extensions: 1996242
Number of successful extensions: 4652
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4650
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 6856295237
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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