>J1L_HCMVA (P17143) Hypothetical protein J1L|
          Length = 309

 Score = 33.1 bits (74), Expect = 0.74
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 635 CWRERDLATPRSAGPDGVAPSKAMDCLPR 549
           C   R L  PRS GP  +AP +   C+PR
Sbjct: 208 CVASRPLFPPRSPGPSSLAPGRCFSCVPR 236

>J1S_HCMVA (P17144) Hypothetical protein J1S|
          Length = 224

 Score = 33.1 bits (74), Expect = 0.74
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 635 CWRERDLATPRSAGPDGVAPSKAMDCLPR 549
           C   R L  PRS GP  +AP +   C+PR
Sbjct: 91  CVASRPLFPPRSPGPSSLAPGRCFSCVPR 119

>NUPL_XENLA (P05221) Nucleoplasmin|
          Length = 200

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = -2

Query: 330 AARKPASGKKQSE-KKRKLDKEAVSEEQNGPADETNAA 220
           A ++PA+ KK  + KK+KLDKE  S E++ P  +   A
Sbjct: 153 AVKRPAATKKAGQAKKKKLDKEDESSEEDSPTKKGKGA 190

>XPC_HUMAN (Q01831) DNA-repair protein complementing XP-C cells (Xeroderma|
           pigmentosum group C complementing protein) (p125)
          Length = 939

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 339 SKNAARKPASGKKQSEKKRKLDKEAVSEEQNGPADETNAA 220
           +K   R  A GK+    ++K  K + SEE  GP D+   A
Sbjct: 372 AKGTCRPSAKGKRNKGGRKKRSKPSSSEEDEGPGDKQEKA 411

>TOP1M_HUMAN (Q969P6) DNA topoisomerase I, mitochondrial precursor (EC 5.99.1.2)|
           (TOP1mt)
          Length = 601

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 556 KQSIALLGATPSGPALRGVAKSRSRQQAAGERF 654
           + ++ LLG  P  PA RGV  SR  Q+ +G R+
Sbjct: 10  RAALTLLGEVPRRPASRGVPGSRRTQKGSGARW 42

>RRP1_DROME (P27864) Recombination repair protein 1 (DNA-(apurinic or|
           apyrimidinic site) lyase) (EC 4.2.99.18)
          Length = 679

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -2

Query: 339 SKNAARKPASGKKQSEKKRKLDKE-AVSEEQNGPADETNAAE 217
           +K   ++PA GKKQ   K+  DKE  V EE+  P+ ET  A+
Sbjct: 311 AKKEGKEPAPGKKQ---KKSADKENGVVEEEAKPSTETKPAK 349

>CMGA_MOUSE (P26339) Chromogranin A precursor (CgA) [Contains: Pancreastatin;|
           Beta-granin; WE-14]
          Length = 463

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = -2

Query: 330 AARKPASGKKQSEKKRKLDKEAVSEEQNGPADETNAAED*FF 205
           +A++ A   KQ EK+ + ++EAV+ E+ GP +   AA    F
Sbjct: 225 SAQQQARKAKQEEKEEEEEEEAVAREKAGPEEVPTAASSSHF 266

>DPOE3_PONPY (Q5R4W3) DNA polymerase epsilon subunit 3 (EC 2.7.7.7) (DNA|
           polymerase II subunit 3) (DNA polymerase epsilon subunit
           p17)
          Length = 147

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = -2

Query: 330 AARKPASGKKQS--EKKRKLDKEAVSEEQNGPADETNAAED 214
           A R+   GKK++  +KK+  DK+  SEEQ+   DE N  ++
Sbjct: 91  AYRREQKGKKEASEQKKKDKDKKTDSEEQDKSRDEDNDEDE 131

>DPOE3_HUMAN (Q9NRF9) DNA polymerase epsilon subunit 3 (EC 2.7.7.7) (DNA|
           polymerase II subunit 3) (DNA polymerase epsilon subunit
           p17) (Chromatin accessibility complex 17) (HuCHRAC17)
           (CHRAC-17) (Arsenic-transactivated protein) (AsTP)
          Length = 147

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = -2

Query: 330 AARKPASGKKQS--EKKRKLDKEAVSEEQNGPADETNAAED 214
           A R+   GKK++  +KK+  DK+  SEEQ+   DE N  ++
Sbjct: 91  AYRREQKGKKEASEQKKKDKDKKTDSEEQDKSRDEDNDEDE 131

>GOGA5_ARATH (Q8S8N9) Golgin-84|
          Length = 707

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = -2

Query: 330 AARKPASGKKQSEKKRKLDKEAVSEEQNGPADET 229
           + RK + GK+ S KK+KL KE  S +++   D++
Sbjct: 38  SGRKGSQGKRTSSKKKKLVKEESSNKRDSSGDQS 71


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,556,112
Number of Sequences: 219361
Number of extensions: 1465651
Number of successful extensions: 4402
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4391
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6200242422
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)