| Clone Name | rbaal5k12 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ000231.1|HVJ000231 Hordeum vulgare mRNA for expressed sequence tag Length = 160 Score = 105 bits (53), Expect = 2e-19 Identities = 71/77 (92%) Strand = Plus / Minus Query: 108 tacatgcgtgattttggaaccaacaatagtttctccttccgacggacggttagcccaaac 167 |||| |||||||||||||| |||||||||||||||||||| ||| | ||||| ||||||| Sbjct: 149 tacaagcgtgattttggaatcaacaatagtttctccttcctacgaatggttatcccaaac 90 Query: 168 acctctgtcatatcaat 184 ||||||||||||||||| Sbjct: 89 acctctgtcatatcaat 73 Score = 50.1 bits (25), Expect = 0.011 Identities = 25/25 (100%) Strand = Plus / Minus Query: 268 cgaggttcataccagggcacatcct 292 ||||||||||||||||||||||||| Sbjct: 31 cgaggttcataccagggcacatcct 7
>gb|AC135512.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0057M06, complete sequence Length = 147673 Score = 89.7 bits (45), Expect = 1e-14 Identities = 93/109 (85%) Strand = Plus / Plus Query: 622 ccctcacctcatcttgtagcttttccatcatgtgtggcctcctcatgagctcagccaagg 681 |||||||||||||||| ||||| | || |||| |||||||| ||||||||| || | || Sbjct: 51568 ccctcacctcatcttgcagcttcttcaacatgcgtggcctctgcatgagctctgcgatgg 51627 Query: 682 tgaattcaaggacgttagctgatgtgtctatcgcaccaaaaaagacatc 730 ||||||||||||| ||||||||||||||| | |||||||||||||| Sbjct: 51628 tgaattcaaggaccaaagctgatgtgtctattcccccaaaaaagacatc 51676 Score = 48.1 bits (24), Expect = 0.044 Identities = 36/40 (90%) Strand = Plus / Plus Query: 303 ccaaatggcaagaactgaaaatcattccccttgaagttga 342 |||||||||||| ||||| |||||||| || ||||||||| Sbjct: 51243 ccaaatggcaagtactgataatcattctccgtgaagttga 51282 Score = 44.1 bits (22), Expect = 0.68 Identities = 37/42 (88%) Strand = Plus / Plus Query: 398 ctcccaggagctcggatccctaccaatggcccacgcattgac 439 ||||||| ||| |||||||||||||||||||| ||||||| Sbjct: 51344 ctcccagaagcgtggatccctaccaatggcccaaacattgac 51385
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 89.7 bits (45), Expect = 1e-14 Identities = 93/109 (85%) Strand = Plus / Plus Query: 622 ccctcacctcatcttgtagcttttccatcatgtgtggcctcctcatgagctcagccaagg 681 |||||||||||||||| ||||| | || |||| |||||||| ||||||||| || | || Sbjct: 15546158 ccctcacctcatcttgcagcttcttcaacatgcgtggcctctgcatgagctctgcgatgg 15546217 Query: 682 tgaattcaaggacgttagctgatgtgtctatcgcaccaaaaaagacatc 730 ||||||||||||| ||||||||||||||| | |||||||||||||| Sbjct: 15546218 tgaattcaaggaccaaagctgatgtgtctattcccccaaaaaagacatc 15546266 Score = 54.0 bits (27), Expect = 7e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 650 catgtgtggcctcctcatgagctcagccaaggtgaattc 688 |||||||||| ||| |||||||||||| ||||||||||| Sbjct: 15378235 catgtgtggcttccgcatgagctcagcaaaggtgaattc 15378273 Score = 50.1 bits (25), Expect = 0.011 Identities = 52/61 (85%) Strand = Plus / Plus Query: 282 gggcacatcctccgtcctgctccaaatggcaagaactgaaaatcattccccttgaagttg 341 |||||||||||||| || |||||||||||| ||||| |||||||| || |||||||| Sbjct: 15545812 gggcacatcctccgcccataaccaaatggcaagtactgataatcattctccgtgaagttg 15545871 Query: 342 a 342 | Sbjct: 15545872 a 15545872 Score = 44.1 bits (22), Expect = 0.68 Identities = 37/42 (88%) Strand = Plus / Plus Query: 398 ctcccaggagctcggatccctaccaatggcccacgcattgac 439 ||||||| ||| |||||||||||||||||||| ||||||| Sbjct: 15545934 ctcccagaagcgtggatccctaccaatggcccaaacattgac 15545975 Score = 44.1 bits (22), Expect = 0.68 Identities = 67/82 (81%) Strand = Plus / Plus Query: 414 tccctaccaatggcccacgcattgacgaccacacgcgtcccagcaggaacaatgtatcca 473 ||||||||||||||||| || ||||| | |||||| |||| | ||| | || || ||| Sbjct: 15377999 tccctaccaatggcccaggcgttgaccaagacacgcatccctgaagggatcatataccca 15378058 Query: 474 tcgatgatgcagtcagccatgg 495 | |||| ||||||||||||||| Sbjct: 15378059 ttgatgttgcagtcagccatgg 15378080
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 89.7 bits (45), Expect = 1e-14 Identities = 93/109 (85%) Strand = Plus / Plus Query: 622 ccctcacctcatcttgtagcttttccatcatgtgtggcctcctcatgagctcagccaagg 681 |||||||||||||||| ||||| | || |||| |||||||| ||||||||| || | || Sbjct: 15633677 ccctcacctcatcttgcagcttcttcaacatgcgtggcctctgcatgagctctgcgatgg 15633736 Query: 682 tgaattcaaggacgttagctgatgtgtctatcgcaccaaaaaagacatc 730 ||||||||||||| ||||||||||||||| | |||||||||||||| Sbjct: 15633737 tgaattcaaggaccaaagctgatgtgtctattcccccaaaaaagacatc 15633785 Score = 54.0 bits (27), Expect = 7e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 650 catgtgtggcctcctcatgagctcagccaaggtgaattc 688 |||||||||| ||| |||||||||||| ||||||||||| Sbjct: 15461172 catgtgtggcttccgcatgagctcagcaaaggtgaattc 15461210 Score = 48.1 bits (24), Expect = 0.044 Identities = 36/40 (90%) Strand = Plus / Plus Query: 303 ccaaatggcaagaactgaaaatcattccccttgaagttga 342 |||||||||||| ||||| |||||||| || ||||||||| Sbjct: 15633352 ccaaatggcaagtactgataatcattctccgtgaagttga 15633391 Score = 44.1 bits (22), Expect = 0.68 Identities = 37/42 (88%) Strand = Plus / Plus Query: 398 ctcccaggagctcggatccctaccaatggcccacgcattgac 439 ||||||| ||| |||||||||||||||||||| ||||||| Sbjct: 15633453 ctcccagaagcgtggatccctaccaatggcccaaacattgac 15633494 Score = 44.1 bits (22), Expect = 0.68 Identities = 67/82 (81%) Strand = Plus / Plus Query: 414 tccctaccaatggcccacgcattgacgaccacacgcgtcccagcaggaacaatgtatcca 473 ||||||||||||||||| || ||||| | |||||| |||| | ||| | || || ||| Sbjct: 15460936 tccctaccaatggcccaggcgttgaccaagacacgcatccctgaagggatcatataccca 15460995 Query: 474 tcgatgatgcagtcagccatgg 495 | |||| ||||||||||||||| Sbjct: 15460996 ttgatgttgcagtcagccatgg 15461017
>gb|AC137586.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0054A16, complete sequence Length = 164605 Score = 60.0 bits (30), Expect = 1e-05 Identities = 60/70 (85%) Strand = Plus / Plus Query: 273 ttcataccagggcacatcctccgtcctgctccaaatggcaagaactgaaaatcattcccc 332 ||||| ||||||||||||||||| || |||||||||||| ||||| |||||||| || Sbjct: 164184 ttcatcccagggcacatcctccgcccataaccaaatggcaagtactgataatcattctcc 164243 Query: 333 ttgaagttga 342 ||||||||| Sbjct: 164244 gtgaagttga 164253 Score = 54.0 bits (27), Expect = 7e-04 Identities = 57/67 (85%) Strand = Plus / Plus Query: 622 ccctcacctcatcttgtagcttttccatcatgtgtggcctcctcatgagctcagccaagg 681 |||||||||||||||| ||||| | || |||| |||||||| ||||||||| || | || Sbjct: 164539 ccctcacctcatcttgcagcttcttcaacatgcgtggcctctgcatgagctctgcgatgg 164598 Query: 682 tgaattc 688 ||||||| Sbjct: 164599 tgaattc 164605 Score = 44.1 bits (22), Expect = 0.68 Identities = 37/42 (88%) Strand = Plus / Plus Query: 398 ctcccaggagctcggatccctaccaatggcccacgcattgac 439 ||||||| ||| |||||||||||||||||||| ||||||| Sbjct: 164315 ctcccagaagcgtggatccctaccaatggcccaaacattgac 164356
>ref|XM_479696.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1575 Score = 58.0 bits (29), Expect = 5e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 279 ccagggcacatcctccgtcctgctccaaatggcaagaactg 319 ||||||||||| || ||||||| |||||||||||||||||| Sbjct: 1400 ccagggcacattcttcgtcctgatccaaatggcaagaactg 1360 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 624 ctcacctcatcttgtagcttt 644 ||||||||||||||||||||| Sbjct: 1058 ctcacctcatcttgtagcttt 1038
>ref|XM_464369.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1791 Score = 58.0 bits (29), Expect = 5e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 278 accagggcacatcctccgtcctgctccaaatgg 310 ||||||||||||||| ||||||||||||||||| Sbjct: 1436 accagggcacatccttcgtcctgctccaaatgg 1404
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 58.0 bits (29), Expect = 5e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 279 ccagggcacatcctccgtcctgctccaaatggcaagaactg 319 ||||||||||| || ||||||| |||||||||||||||||| Sbjct: 314490 ccagggcacattcttcgtcctgatccaaatggcaagaactg 314450 Score = 46.1 bits (23), Expect = 0.17 Identities = 23/23 (100%) Strand = Plus / Minus Query: 162 ccaaacacctctgtcatatcaat 184 ||||||||||||||||||||||| Sbjct: 303528 ccaaacacctctgtcatatcaat 303506 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 624 ctcacctcatcttgtagcttt 644 ||||||||||||||||||||| Sbjct: 314148 ctcacctcatcttgtagcttt 314128 Score = 42.1 bits (21), Expect = 2.7 Identities = 39/45 (86%) Strand = Plus / Plus Query: 272 gttcataccagggcacatcctccgtcctgctccaaatggcaagaa 316 ||||||||| ||||| |||||||| || | ||| ||||||||||| Sbjct: 282596 gttcatacctgggcatatcctccgaccagttccgaatggcaagaa 282640
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 58.0 bits (29), Expect = 5e-05 Identities = 29/29 (100%) Strand = Plus / Minus Query: 282 gggcacatcctccgtcctgctccaaatgg 310 ||||||||||||||||||||||||||||| Sbjct: 25774960 gggcacatcctccgtcctgctccaaatgg 25774932 Score = 56.0 bits (28), Expect = 2e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 279 ccagggcacatcctccgtcctgctccaaatgg 310 ||||||||||||||||| |||||||||||||| Sbjct: 25713689 ccagggcacatcctccgacctgctccaaatgg 25713720
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 58.0 bits (29), Expect = 5e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 278 accagggcacatcctccgtcctgctccaaatgg 310 ||||||||||||||| ||||||||||||||||| Sbjct: 4766829 accagggcacatccttcgtcctgctccaaatgg 4766797 Score = 46.1 bits (23), Expect = 0.17 Identities = 38/43 (88%) Strand = Plus / Plus Query: 276 ataccagggcacatcctccgtcctgctccaaatggcaagaact 318 |||||||| ||||| |||||||| | |||||||||||||||| Sbjct: 4724506 ataccaggacacattctccgtccagacccaaatggcaagaact 4724548 Score = 44.1 bits (22), Expect = 0.68 Identities = 28/30 (93%) Strand = Plus / Minus Query: 278 accagggcacatcctccgtcctgctccaaa 307 ||||||||||||||| || ||||||||||| Sbjct: 4770838 accagggcacatccttcgccctgctccaaa 4770809 Score = 42.1 bits (21), Expect = 2.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 279 ccagggcacatcctccgtcctgctccaaa 307 |||||||||||||| ||||| |||||||| Sbjct: 4755982 ccagggcacatccttcgtccagctccaaa 4755954 Score = 42.1 bits (21), Expect = 2.7 Identities = 30/33 (90%) Strand = Plus / Minus Query: 275 cataccagggcacatcctccgtcctgctccaaa 307 |||||||||||||||||| || || |||||||| Sbjct: 4742823 cataccagggcacatccttcgcccagctccaaa 4742791
>dbj|AP004000.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1115_B01 Length = 129329 Score = 58.0 bits (29), Expect = 5e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 278 accagggcacatcctccgtcctgctccaaatgg 310 ||||||||||||||| ||||||||||||||||| Sbjct: 47419 accagggcacatccttcgtcctgctccaaatgg 47387 Score = 46.1 bits (23), Expect = 0.17 Identities = 38/43 (88%) Strand = Plus / Plus Query: 276 ataccagggcacatcctccgtcctgctccaaatggcaagaact 318 |||||||| ||||| |||||||| | |||||||||||||||| Sbjct: 5096 ataccaggacacattctccgtccagacccaaatggcaagaact 5138 Score = 44.1 bits (22), Expect = 0.68 Identities = 28/30 (93%) Strand = Plus / Minus Query: 278 accagggcacatcctccgtcctgctccaaa 307 ||||||||||||||| || ||||||||||| Sbjct: 51428 accagggcacatccttcgccctgctccaaa 51399 Score = 42.1 bits (21), Expect = 2.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 279 ccagggcacatcctccgtcctgctccaaa 307 |||||||||||||| ||||| |||||||| Sbjct: 36572 ccagggcacatccttcgtccagctccaaa 36544 Score = 42.1 bits (21), Expect = 2.7 Identities = 30/33 (90%) Strand = Plus / Minus Query: 275 cataccagggcacatcctccgtcctgctccaaa 307 |||||||||||||||||| || || |||||||| Sbjct: 23413 cataccagggcacatccttcgcccagctccaaa 23381
>dbj|AP003990.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1073_F05 Length = 124252 Score = 58.0 bits (29), Expect = 5e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 278 accagggcacatcctccgtcctgctccaaatgg 310 ||||||||||||||| ||||||||||||||||| Sbjct: 8988 accagggcacatccttcgtcctgctccaaatgg 8956 Score = 44.1 bits (22), Expect = 0.68 Identities = 28/30 (93%) Strand = Plus / Minus Query: 278 accagggcacatcctccgtcctgctccaaa 307 ||||||||||||||| || ||||||||||| Sbjct: 12997 accagggcacatccttcgccctgctccaaa 12968
>dbj|AP003523.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0416A11 Length = 171519 Score = 58.0 bits (29), Expect = 5e-05 Identities = 29/29 (100%) Strand = Plus / Minus Query: 282 gggcacatcctccgtcctgctccaaatgg 310 ||||||||||||||||||||||||||||| Sbjct: 57164 gggcacatcctccgtcctgctccaaatgg 57136
>dbj|AP004462.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0450B04 Length = 153268 Score = 58.0 bits (29), Expect = 5e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 279 ccagggcacatcctccgtcctgctccaaatggcaagaactg 319 ||||||||||| || ||||||| |||||||||||||||||| Sbjct: 24004 ccagggcacattcttcgtcctgatccaaatggcaagaactg 23964 Score = 46.1 bits (23), Expect = 0.17 Identities = 23/23 (100%) Strand = Plus / Minus Query: 162 ccaaacacctctgtcatatcaat 184 ||||||||||||||||||||||| Sbjct: 13042 ccaaacacctctgtcatatcaat 13020 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 624 ctcacctcatcttgtagcttt 644 ||||||||||||||||||||| Sbjct: 23662 ctcacctcatcttgtagcttt 23642
>dbj|AP003909.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1300_E01 Length = 103022 Score = 58.0 bits (29), Expect = 5e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 279 ccagggcacatcctccgtcctgctccaaatggcaagaactg 319 ||||||||||| || ||||||| |||||||||||||||||| Sbjct: 80916 ccagggcacattcttcgtcctgatccaaatggcaagaactg 80876 Score = 46.1 bits (23), Expect = 0.17 Identities = 23/23 (100%) Strand = Plus / Minus Query: 162 ccaaacacctctgtcatatcaat 184 ||||||||||||||||||||||| Sbjct: 69954 ccaaacacctctgtcatatcaat 69932 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 624 ctcacctcatcttgtagcttt 644 ||||||||||||||||||||| Sbjct: 80574 ctcacctcatcttgtagcttt 80554 Score = 42.1 bits (21), Expect = 2.7 Identities = 39/45 (86%) Strand = Plus / Plus Query: 272 gttcataccagggcacatcctccgtcctgctccaaatggcaagaa 316 ||||||||| ||||| |||||||| || | ||| ||||||||||| Sbjct: 49022 gttcatacctgggcatatcctccgaccagttccgaatggcaagaa 49066
>dbj|AK072307.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023020N11, full insert sequence Length = 2010 Score = 58.0 bits (29), Expect = 5e-05 Identities = 29/29 (100%) Strand = Plus / Minus Query: 282 gggcacatcctccgtcctgctccaaatgg 310 ||||||||||||||||||||||||||||| Sbjct: 1688 gggcacatcctccgtcctgctccaaatgg 1660
>dbj|AK068907.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002L07, full insert sequence Length = 1791 Score = 58.0 bits (29), Expect = 5e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 278 accagggcacatcctccgtcctgctccaaatgg 310 ||||||||||||||| ||||||||||||||||| Sbjct: 1436 accagggcacatccttcgtcctgctccaaatgg 1404
>dbj|AK067059.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013090O06, full insert sequence Length = 2127 Score = 58.0 bits (29), Expect = 5e-05 Identities = 29/29 (100%) Strand = Plus / Minus Query: 282 gggcacatcctccgtcctgctccaaatgg 310 ||||||||||||||||||||||||||||| Sbjct: 1667 gggcacatcctccgtcctgctccaaatgg 1639
>dbj|AP003571.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0458E02 Length = 154458 Score = 56.0 bits (28), Expect = 2e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 279 ccagggcacatcctccgtcctgctccaaatgg 310 ||||||||||||||||| |||||||||||||| Sbjct: 137134 ccagggcacatcctccgacctgctccaaatgg 137165
>gb|AC132003.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0091D07, complete sequence Length = 144652 Score = 54.0 bits (27), Expect = 7e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 650 catgtgtggcctcctcatgagctcagccaaggtgaattc 688 |||||||||| ||| |||||||||||| ||||||||||| Sbjct: 121865 catgtgtggcttccgcatgagctcagcaaaggtgaattc 121903 Score = 44.1 bits (22), Expect = 0.68 Identities = 67/82 (81%) Strand = Plus / Plus Query: 414 tccctaccaatggcccacgcattgacgaccacacgcgtcccagcaggaacaatgtatcca 473 ||||||||||||||||| || ||||| | |||||| |||| | ||| | || || ||| Sbjct: 121629 tccctaccaatggcccaggcgttgaccaagacacgcatccctgaagggatcatataccca 121688 Query: 474 tcgatgatgcagtcagccatgg 495 | |||| ||||||||||||||| Sbjct: 121689 ttgatgttgcagtcagccatgg 121710
>dbj|AK066010.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013043F18, full insert sequence Length = 1779 Score = 54.0 bits (27), Expect = 7e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 650 catgtgtggcctcctcatgagctcagccaaggtgaattc 688 |||||||||| ||| |||||||||||| ||||||||||| Sbjct: 1040 catgtgtggcttccgcatgagctcagcaaaggtgaattc 1002 Score = 44.1 bits (22), Expect = 0.68 Identities = 67/82 (81%) Strand = Plus / Minus Query: 414 tccctaccaatggcccacgcattgacgaccacacgcgtcccagcaggaacaatgtatcca 473 ||||||||||||||||| || ||||| | |||||| |||| | ||| | || || ||| Sbjct: 1276 tccctaccaatggcccaggcgttgaccaagacacgcatccctgaagggatcatataccca 1217 Query: 474 tcgatgatgcagtcagccatgg 495 | |||| ||||||||||||||| Sbjct: 1216 ttgatgttgcagtcagccatgg 1195
>dbj|AK060739.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-C11, full insert sequence Length = 1603 Score = 54.0 bits (27), Expect = 7e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 650 catgtgtggcctcctcatgagctcagccaaggtgaattc 688 |||||||||| ||| |||||||||||| ||||||||||| Sbjct: 885 catgtgtggcttccgcatgagctcagcaaaggtgaattc 847 Score = 44.1 bits (22), Expect = 0.68 Identities = 67/82 (81%) Strand = Plus / Minus Query: 414 tccctaccaatggcccacgcattgacgaccacacgcgtcccagcaggaacaatgtatcca 473 ||||||||||||||||| || ||||| | |||||| |||| | ||| | || || ||| Sbjct: 1121 tccctaccaatggcccaggcgttgaccaagacacgcatccctgaagggatcatataccca 1062 Query: 474 tcgatgatgcagtcagccatgg 495 | |||| ||||||||||||||| Sbjct: 1061 ttgatgttgcagtcagccatgg 1040
>gb|DQ122176.1| Gossypium hirsutum cytochrome P450 DDWF1 mRNA, complete cds Length = 1676 Score = 50.1 bits (25), Expect = 0.011 Identities = 43/49 (87%) Strand = Plus / Minus Query: 279 ccagggcacatcctccgtcctgctccaaatggcaagaactgaaaatcat 327 |||||||||||||||| ||| || ||||||||||| | |||||||||| Sbjct: 1376 ccagggcacatcctccttccagccccaaatggcaacagttgaaaatcat 1328
>ref|XM_479695.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1587 Score = 46.1 bits (23), Expect = 0.17 Identities = 23/23 (100%) Strand = Plus / Minus Query: 162 ccaaacacctctgtcatatcaat 184 ||||||||||||||||||||||| Sbjct: 1535 ccaaacacctctgtcatatcaat 1513
>ref|XM_464360.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1560 Score = 46.1 bits (23), Expect = 0.17 Identities = 38/43 (88%) Strand = Plus / Minus Query: 276 ataccagggcacatcctccgtcctgctccaaatggcaagaact 318 |||||||| ||||| |||||||| | |||||||||||||||| Sbjct: 1370 ataccaggacacattctccgtccagacccaaatggcaagaact 1328
>ref|XM_463098.1| Oryza sativa (japonica cultivar-group), mRNA Length = 558 Score = 46.1 bits (23), Expect = 0.17 Identities = 26/27 (96%) Strand = Plus / Minus Query: 283 ggcacatcctccgtcctgctccaaatg 309 ||||||||||||||||||| ||||||| Sbjct: 367 ggcacatcctccgtcctgccccaaatg 341
>gb|AC135564.4| Oryza sativa chromosome 3 BAC OSJNBb0056O10 genomic sequence, complete sequence Length = 139771 Score = 46.1 bits (23), Expect = 0.17 Identities = 26/27 (96%) Strand = Plus / Minus Query: 283 ggcacatcctccgtcctgctccaaatg 309 ||||||||||||||||||| ||||||| Sbjct: 119821 ggcacatcctccgtcctgccccaaatg 119795
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 46.1 bits (23), Expect = 0.17 Identities = 26/27 (96%) Strand = Plus / Plus Query: 283 ggcacatcctccgtcctgctccaaatg 309 ||||||||||||||||||| ||||||| Sbjct: 21767995 ggcacatcctccgtcctgccccaaatg 21768021 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 486 tcagccatggcaaggtgcgga 506 ||||||||||||||||||||| Sbjct: 3407782 tcagccatggcaaggtgcgga 3407802
>gb|AC137921.2| Oryza sativa chromosome 3 BAC OSJNBa0027H16 genomic sequence, complete sequence Length = 163108 Score = 46.1 bits (23), Expect = 0.17 Identities = 26/27 (96%) Strand = Plus / Plus Query: 283 ggcacatcctccgtcctgctccaaatg 309 ||||||||||||||||||| ||||||| Sbjct: 156240 ggcacatcctccgtcctgccccaaatg 156266
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 46.1 bits (23), Expect = 0.17 Identities = 26/27 (96%) Strand = Plus / Plus Query: 283 ggcacatcctccgtcctgctccaaatg 309 ||||||||||||||||||| ||||||| Sbjct: 21761024 ggcacatcctccgtcctgccccaaatg 21761050 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 486 tcagccatggcaaggtgcgga 506 ||||||||||||||||||||| Sbjct: 3407893 tcagccatggcaaggtgcgga 3407913
>ref|XM_775853.1| PREDICTED: Strongylocentrotus purpuratus similar to cytochrome P450, family 2, subfamily u, polypeptide 1 (LOC575452), mRNA Length = 1143 Score = 44.1 bits (22), Expect = 0.68 Identities = 28/30 (93%) Strand = Plus / Minus Query: 283 ggcacatcctccgtcctgctccaaatggca 312 |||| |||||||||||||||||||| |||| Sbjct: 979 ggcatatcctccgtcctgctccaaaaggca 950
>ref|XM_479689.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1605 Score = 42.1 bits (21), Expect = 2.7 Identities = 39/45 (86%) Strand = Plus / Minus Query: 272 gttcataccagggcacatcctccgtcctgctccaaatggcaagaa 316 ||||||||| ||||| |||||||| || | ||| ||||||||||| Sbjct: 1440 gttcatacctgggcatatcctccgaccagttccgaatggcaagaa 1396
>ref|XM_464368.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1674 Score = 42.1 bits (21), Expect = 2.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 279 ccagggcacatcctccgtcctgctccaaa 307 |||||||||||||| ||||| |||||||| Sbjct: 1361 ccagggcacatccttcgtccagctccaaa 1333
>ref|XM_464364.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1653 Score = 42.1 bits (21), Expect = 2.7 Identities = 30/33 (90%) Strand = Plus / Minus Query: 275 cataccagggcacatcctccgtcctgctccaaa 307 |||||||||||||||||| || || |||||||| Sbjct: 1366 cataccagggcacatccttcgcccagctccaaa 1334
>ref|NM_193326.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1494 Score = 42.1 bits (21), Expect = 2.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 213 tcccagtcaaaatggcacacaaggtttgc 241 ||||||||||||||| ||| ||||||||| Sbjct: 1352 tcccagtcaaaatggtacagaaggtttgc 1324
>ref|NM_187758.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3882 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 486 tcagccatggcaaggtgcgga 506 ||||||||||||||||||||| Sbjct: 3455 tcagccatggcaaggtgcgga 3475
>ref|NM_182698.1| Mus musculus myosin XV (Myo15), transcript variant 2, mRNA Length = 7953 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 602 ttgtccttggggtaaaatacc 622 ||||||||||||||||||||| Sbjct: 4524 ttgtccttggggtaaaatacc 4504
>ref|NM_010862.1| Mus musculus myosin XV (Myo15), transcript variant 1, mRNA Length = 11769 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 602 ttgtccttggggtaaaatacc 622 ||||||||||||||||||||| Sbjct: 8340 ttgtccttggggtaaaatacc 8320
>gb|AY532373.1| Ammi majus cytochrome P450 (CYP82H1) mRNA, complete cds Length = 1758 Score = 42.1 bits (21), Expect = 2.7 Identities = 42/49 (85%) Strand = Plus / Minus Query: 276 ataccagggcacatcctccgtcctgctccaaatggcaagaactgaaaat 324 ||||||||||| ||||||||||| ||||||||| |||| || ||||| Sbjct: 1419 ataccagggcatgacctccgtcctgatccaaatggtaagagctcaaaat 1371
>gb|AY331132.1| Mus musculus myosin XVA isoform 1a mRNA, complete cds Length = 11715 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 602 ttgtccttggggtaaaatacc 622 ||||||||||||||||||||| Sbjct: 8286 ttgtccttggggtaaaatacc 8266
>gb|AC126268.3| Mus musculus BAC clone RP23-227O11 from chromosome 12, complete sequence Length = 201581 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 56 aagcattataatgcatataac 76 ||||||||||||||||||||| Sbjct: 120647 aagcattataatgcatataac 120667
>gb|AC121918.3| Mus musculus BAC clone RP24-195D23 from chromosome 2, complete sequence Length = 179270 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 186 tcttttctcccaaccccaagg 206 ||||||||||||||||||||| Sbjct: 98001 tcttttctcccaaccccaagg 97981
>emb|AL355296.12| Human DNA sequence from clone RP11-510H23 on chromosome 6 Contains parts of 3 novel genes and a CpG island, complete sequence Length = 159110 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 40 ccttctttacaaagaaaagca 60 ||||||||||||||||||||| Sbjct: 14271 ccttctttacaaagaaaagca 14291
>gb|AC164638.4| Mus musculus BAC clone RP23-198N12 from chromosome 7, complete sequence Length = 242297 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 60 attataatgcatataacacaa 80 ||||||||||||||||||||| Sbjct: 110869 attataatgcatataacacaa 110849
>gb|AC105729.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1607A12, complete sequence Length = 177327 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 486 tcagccatggcaaggtgcgga 506 ||||||||||||||||||||| Sbjct: 21432 tcagccatggcaaggtgcgga 21412
>emb|AL596386.16| Mouse DNA sequence from clone RP23-331I21 on chromosome 11 Contains the 3' end of the Myo15 gene for myosin XV, a novel gene, eleven ubiquitin pseudogenes, four poly A binding protein, cytoplasmic 4 (Pabpc4) pseudogenes and a CpG island, complete sequence Length = 201663 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 602 ttgtccttggggtaaaatacc 622 ||||||||||||||||||||| Sbjct: 22379 ttgtccttggggtaaaatacc 22359
>dbj|AK061866.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-H09, full insert sequence Length = 1631 Score = 42.1 bits (21), Expect = 2.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 213 tcccagtcaaaatggcacacaaggtttgc 241 ||||||||||||||| ||| ||||||||| Sbjct: 1367 tcccagtcaaaatggtacagaaggtttgc 1339
>gb|AC104428.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1123F12, complete sequence Length = 103330 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 486 tcagccatggcaaggtgcgga 506 ||||||||||||||||||||| Sbjct: 102593 tcagccatggcaaggtgcgga 102573
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 2.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 213 tcccagtcaaaatggcacacaaggtttgc 241 ||||||||||||||| ||| ||||||||| Sbjct: 20152108 tcccagtcaaaatggtacagaaggtttgc 20152080 Score = 42.1 bits (21), Expect = 2.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 213 tcccagtcaaaatggcacacaaggtttgc 241 ||||||||||||||| ||| ||||||||| Sbjct: 20122708 tcccagtcaaaatggtacagaaggtttgc 20122680
>dbj|AP004232.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0051H17 Length = 187471 Score = 42.1 bits (21), Expect = 2.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 213 tcccagtcaaaatggcacacaaggtttgc 241 ||||||||||||||| ||| ||||||||| Sbjct: 58486 tcccagtcaaaatggtacagaaggtttgc 58458 Score = 42.1 bits (21), Expect = 2.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 213 tcccagtcaaaatggcacacaaggtttgc 241 ||||||||||||||| ||| ||||||||| Sbjct: 29086 tcccagtcaaaatggtacagaaggtttgc 29058
>dbj|AP004233.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0065J17 Length = 139014 Score = 42.1 bits (21), Expect = 2.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 213 tcccagtcaaaatggcacacaaggtttgc 241 ||||||||||||||| ||| ||||||||| Sbjct: 120670 tcccagtcaaaatggtacagaaggtttgc 120642
>dbj|AK120213.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013039G14, full insert sequence Length = 2706 Score = 42.1 bits (21), Expect = 2.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 213 tcccagtcaaaatggcacacaaggtttgc 241 ||||||||||||||| ||| ||||||||| Sbjct: 2426 tcccagtcaaaatggtacagaaggtttgc 2398
>dbj|AK108613.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-147-A12, full insert sequence Length = 1983 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 486 tcagccatggcaaggtgcgga 506 ||||||||||||||||||||| Sbjct: 1127 tcagccatggcaaggtgcgga 1147
>dbj|AK107034.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-121-B07, full insert sequence Length = 1674 Score = 42.1 bits (21), Expect = 2.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 279 ccagggcacatcctccgtcctgctccaaa 307 |||||||||||||| ||||| |||||||| Sbjct: 1361 ccagggcacatccttcgtccagctccaaa 1333
>dbj|AK100832.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023123D13, full insert sequence Length = 1654 Score = 42.1 bits (21), Expect = 2.7 Identities = 30/33 (90%) Strand = Plus / Minus Query: 275 cataccagggcacatcctccgtcctgctccaaa 307 |||||||||||||||||| || || |||||||| Sbjct: 1367 cataccagggcacatccttcgcccagctccaaa 1335
>dbj|AK100062.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013160F05, full insert sequence Length = 1760 Score = 42.1 bits (21), Expect = 2.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 213 tcccagtcaaaatggcacacaaggtttgc 241 ||||||||||||||| ||| ||||||||| Sbjct: 1496 tcccagtcaaaatggtacagaaggtttgc 1468
>gb|AF144095.1|AF144095 Mus musculus unconventional myosin-15 mRNA, complete cds Length = 11769 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 602 ttgtccttggggtaaaatacc 622 ||||||||||||||||||||| Sbjct: 8340 ttgtccttggggtaaaatacc 8320
>gb|AF144093.1|AF144093 Mus musculus unconventional myosin-15 gene, complete sequence Length = 88406 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 602 ttgtccttggggtaaaatacc 622 ||||||||||||||||||||| Sbjct: 53715 ttgtccttggggtaaaatacc 53695
>emb|BX664607.21| Zebrafish DNA sequence from clone CH211-132B12 in linkage group 18, complete sequence Length = 179328 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 42 ttctttacaaagaaaagcatt 62 ||||||||||||||||||||| Sbjct: 41459 ttctttacaaagaaaagcatt 41439
>gb|AY331133.1| Mus musculus myosin XVA isoform 2a mRNA, complete cds Length = 7953 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 602 ttgtccttggggtaaaatacc 622 ||||||||||||||||||||| Sbjct: 4524 ttgtccttggggtaaaatacc 4504
>gb|AY870922.1| Teucrium chamaedrys isolate cy450P3B8 cytochrome P450 gene, partial cds Length = 341 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 414 tccctaccaatggcccacgcattga 438 ||||||||||| ||||||||||||| Sbjct: 252 tccctaccaattgcccacgcattga 228
>emb|AL773595.10| Mouse DNA sequence from clone RP23-297I16 on chromosome 2, complete sequence Length = 173925 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 186 tcttttctcccaaccccaagg 206 ||||||||||||||||||||| Sbjct: 168499 tcttttctcccaaccccaagg 168479
>gb|AF053130.1|AF053130 Mus musculus unconventional myosin MYO15 (Myo15) mRNA, partial cds Length = 5351 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 602 ttgtccttggggtaaaatacc 622 ||||||||||||||||||||| Sbjct: 4492 ttgtccttggggtaaaatacc 4472 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,479,606 Number of Sequences: 3902068 Number of extensions: 7479606 Number of successful extensions: 141115 Number of sequences better than 10.0: 63 Number of HSP's better than 10.0 without gapping: 65 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 140562 Number of HSP's gapped (non-prelim): 546 length of query: 774 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 751 effective length of database: 17,143,297,704 effective search space: 12874616575704 effective search space used: 12874616575704 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)