ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal5k11 |
|---|---|
| Clone Library Name | barley_pub |
>SGAT_ARATH (Q56YA5) Serine--glyoxylate aminotransferase (EC 2.6.1.45)| (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) (Serine--pyruvate aminotransferase) (EC 2.6.1.51) Length = 401 Score = 229 bits (585), Expect = 5e-60 Identities = 112/153 (73%), Positives = 128/153 (83%) Frame = -1 Query: 669 YTPSIQXXXXXXXXXXXLFEEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTV 490 YTPSIQ +FEEGL+N+I RH RLG ATRLAV AWGLKNCT+KEE S+TV Sbjct: 249 YTPSIQLLYGLRAALDLIFEEGLENIIARHARLGKATRLAVEAWGLKNCTQKEEWISNTV 308 Query: 489 TAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLGGVEM 310 TAV+VPP+ID SEIV+ AW+RYNLSLGLGLNKVAGKVFRIGHLG++NELQLLGCL GVEM Sbjct: 309 TAVMVPPHIDGSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGNVNELQLLGCLAGVEM 368 Query: 309 VLKDIGYPVKLGSGVAAAAAYLSNSTPLIPSRI 211 +LKD+GYPV +GSGVAAA+ YL + PLIPSRI Sbjct: 369 ILKDVGYPVVMGSGVAAASTYLQHHIPLIPSRI 401
>SGAA_METEX (P55819) Serine--glyoxylate aminotransferase (EC 2.6.1.45) (SGAT)| Length = 379 Score = 158 bits (399), Expect = 2e-38 Identities = 82/142 (57%), Positives = 100/142 (70%) Frame = -1 Query: 669 YTPSIQXXXXXXXXXXXLFEEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTV 490 YTP + LFEEGL+NV RH LG ATR AVAAWGLK C + E SDTV Sbjct: 230 YTPPLPLLYGLREALACLFEEGLENVYHRHAVLGEATRQAVAAWGLKTCAKSPEWNSDTV 289 Query: 489 TAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLGGVEM 310 TA++ P +D+++I+KHA+ RYNL+LG GL++VAGKVFRIGH+G LNEL LLG + G EM Sbjct: 290 TAILAPEGVDAAKIIKHAYVRYNLALGAGLSQVAGKVFRIGHVGDLNELSLLGAIAGAEM 349 Query: 309 VLKDIGYPVKLGSGVAAAAAYL 244 L D G V GSGVAAA++YL Sbjct: 350 SLIDNGVKVTPGSGVAAASSYL 371
>SGAA_HYPME (O08374) Serine--glyoxylate aminotransferase (EC 2.6.1.45) (SGAT)| Length = 404 Score = 154 bits (388), Expect = 3e-37 Identities = 82/153 (53%), Positives = 100/153 (65%) Frame = -1 Query: 693 TDGKSKMDYTPSIQXXXXXXXXXXXLFEEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEK 514 T+ + YTP+ Q LF EGLDNV RHTRL + R AV AWGLK C ++ Sbjct: 236 TNDQGFFPYTPATQLLRGLRTSLDLLFAEGLDNVFARHTRLASGVRAAVDAWGLKLCAKE 295 Query: 513 EENFSDTVTAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLL 334 + +SDTV+A++VP IDS+ I K A+ RYN S GLGLNKVAGKVFRIGHLG L+E+ + Sbjct: 296 PKWYSDTVSAILVPEGIDSNAITKTAYYRYNTSFGLGLNKVAGKVFRIGHLGMLDEVMIG 355 Query: 333 GCLGGVEMVLKDIGYPVKLGSGVAAAAAYLSNS 235 G L EM LKD G +KLGSG AAA Y S + Sbjct: 356 GALFAAEMALKDNGVNLKLGSGTGAAAEYFSKN 388
>Y959_METJA (Q58369) Putative aminotransferase MJ0959 (EC 2.6.1.-)| Length = 385 Score = 90.5 bits (223), Expect = 5e-18 Identities = 55/147 (37%), Positives = 79/147 (53%) Frame = -1 Query: 684 KSKMDYTPSIQXXXXXXXXXXXLFEEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEEN 505 K + YTPS+ + EEG++N +KRH RL ATR + A G++ KE Sbjct: 238 KKQTPYTPSVNLTYALNVALDLVLEEGIENRVKRHERLAKATRAGLEAMGIE-LFAKERA 296 Query: 504 FSDTVTAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCL 325 S TVT+ P I+ S+ +YN+ + G +AGK+FRIGH+G E ++L L Sbjct: 297 RSVTVTSAKYPEGIEDSKFRGILSNKYNIVVAGGQKHLAGKIFRIGHMGICGEKEVLATL 356 Query: 324 GGVEMVLKDIGYPVKLGSGVAAAAAYL 244 VE+ LK++G+ VK SGV A L Sbjct: 357 ACVELALKELGFEVK-ESGVEVAKEVL 382
>DHSS_ANACY (P16421) Soluble hydrogenase 42 kDa subunit (EC 1.12.-.-) (Tritium| exchange subunit) Length = 383 Score = 80.5 bits (197), Expect = 5e-15 Identities = 48/150 (32%), Positives = 83/150 (55%), Gaps = 1/150 (0%) Frame = -1 Query: 684 KSKMDYTPSIQXXXXXXXXXXXLFEEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEEN 505 K+ +TP + + +EGL+++ RH R ATR A+ A L +E Sbjct: 236 KNTTPFTPPVNLMVALHTTLGMMKKEGLESIFTRHERQKNATRAAMKALNLP-LFAADEC 294 Query: 504 FSDTVTAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCL 325 S +TAV P +++ +I KR++++L G + ++ K+FR+GHLG +++ +L C+ Sbjct: 295 ASPAITAVATPG-MEADKIRSLMKKRFDIALAGGQDHLSNKIFRVGHLGFVSDRDILSCI 353 Query: 324 GGVEMVLKDIGYP-VKLGSGVAAAAAYLSN 238 +E+VL ++G+ G+GVAAAA SN Sbjct: 354 ASLEVVLLELGHENFNSGAGVAAAARVFSN 383
>DHSS_SYNP1 (P14776) Soluble hydrogenase, small subunit (EC 1.12.-.-) (Tritium| exchange subunit) Length = 384 Score = 73.2 bits (178), Expect = 8e-13 Identities = 48/151 (31%), Positives = 78/151 (51%), Gaps = 1/151 (0%) Frame = -1 Query: 684 KSKMDYTPSIQXXXXXXXXXXXLFEEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEEN 505 K +TP + + EGL+ + +RH RL ATR A+ A L + Sbjct: 236 KHTTPFTPPVNLFFALKTALEMMQAEGLEAIFQRHQRLMQATRAAMKALNLP-LYAADSC 294 Query: 504 FSDTVTAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCL 325 S +TAV P +++ I KR++++L G + + G++FRIGHLG + + +L + Sbjct: 295 ASPAITAVA-PQGVEAENIRSLMKKRFDIALAGGQDHLKGQIFRIGHLGFVGDRDILAAV 353 Query: 324 GGVEMVLKDIGYP-VKLGSGVAAAAAYLSNS 235 +E VL ++GY G+GVAAA+ LS + Sbjct: 354 SALEAVLAELGYTNFTPGAGVAAASRVLSTA 384
>PUCG_BACSU (O32148) Purine catabolism protein pucG (EC 2.-.-.-)| Length = 416 Score = 45.4 bits (106), Expect = 2e-04 Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 1/127 (0%) Frame = -1 Query: 612 EEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTVTAVVVPPYIDSSEIVKHAW 433 EEGL+ +RH A + A GL+ + VT V +P ID + Sbjct: 285 EEGLETRFERHRHHEAALAAGIKAMGLRLFGDDSCKMP-VVTCVEIPGGIDGESVRDMLL 343 Query: 432 KRYNLSLGLGLNKVAGKVFRIGHLGH-LNELQLLGCLGGVEMVLKDIGYPVKLGSGVAAA 256 ++ + + +AGK++RIG +G+ + +L L G+E VL ++ G + AA Sbjct: 344 AQFGIEIASSFGPLAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLRHNAGIEAGKALQAA 403 Query: 255 AAYLSNS 235 N+ Sbjct: 404 LDVYENA 410
>SPYA_RAT (P09139) Serine--pyruvate aminotransferase, mitochondrial precursor| (EC 2.6.1.51) (SPT) (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 414 Score = 44.7 bits (104), Expect = 3e-04 Identities = 27/86 (31%), Positives = 40/86 (46%) Frame = -1 Query: 612 EEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTVTAVVVPPYIDSSEIVKHAW 433 E+GL+N +RH + GLK + E T+T V VP + +IV + Sbjct: 303 EQGLENSWRRHREATAHLHKCLRELGLKFFVKDPEIRLPTITTVTVPAGYNWRDIVSYVL 362 Query: 432 KRYNLSLGLGLNKVAGKVFRIGHLGH 355 +N+ + GL KV RIG LG+ Sbjct: 363 DHFNIEISGGLGPSEDKVLRIGLLGY 388
>SPYA_CALJA (P31029) Serine--pyruvate aminotransferase, mitochondrial precursor| (EC 2.6.1.51) (SPT) (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 414 Score = 44.7 bits (104), Expect = 3e-04 Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 1/112 (0%) Frame = -1 Query: 690 DGKSKM-DYTPSIQXXXXXXXXXXXLFEEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEK 514 DG+ +M +T + L E+GL+N ++H + A GL+ + Sbjct: 276 DGQPRMYHHTTPVVSLYSLREGLALLSEQGLENSWRKHREAAAYLHGRLQALGLRLFVKD 335 Query: 513 EENFSDTVTAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLG 358 TVT V VP D +IV + +R+ + + GL GKV RIG +G Sbjct: 336 PALRLPTVTTVAVPTGYDWRDIVSYLIERFGIEITGGLGPSTGKVLRIGLMG 387
>SPYA_HUMAN (P21549) Serine--pyruvate aminotransferase (EC 2.6.1.51) (SPT)| (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 392 Score = 42.0 bits (97), Expect = 0.002 Identities = 27/85 (31%), Positives = 40/85 (47%) Frame = -1 Query: 612 EEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTVTAVVVPPYIDSSEIVKHAW 433 E+GL+N ++H + A GL+ + TVT V VP D +IV + Sbjct: 281 EQGLENSWRQHREAAAYLHGRLQALGLQLFVKDPALRLPTVTTVAVPAGYDWRDIVSYVI 340 Query: 432 KRYNLSLGLGLNKVAGKVFRIGHLG 358 +++ + GL GKV RIG LG Sbjct: 341 DHFDIEIMGGLGPSTGKVLRIGLLG 365
>SPYA_FELCA (P41689) Serine--pyruvate aminotransferase, mitochondrial precursor| (EC 2.6.1.51) (SPT) (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 414 Score = 42.0 bits (97), Expect = 0.002 Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 1/112 (0%) Frame = -1 Query: 690 DGKSKM-DYTPSIQXXXXXXXXXXXLFEEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEK 514 DGK ++ +T + + E+GL+N ++H + + GL+ + Sbjct: 276 DGKPRIYHHTTPVVSLYSLRESLALIAEQGLENSWRQHREVTAYLHGRLQGLGLQLFVKD 335 Query: 513 EENFSDTVTAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLG 358 TVT V VP D +IV + +++ + GL GKV RIG LG Sbjct: 336 PALRLPTVTTVAVPAGYDWRDIVNYVMDHFDIEITGGLGPSMGKVLRIGLLG 387
>SGAT_MAIZE (P84187) Serine--glyoxylate aminotransferase (EC 2.6.1.45) (SGAT)| (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) (Fragments) Length = 136 Score = 40.0 bits (92), Expect = 0.007 Identities = 28/62 (45%), Positives = 30/62 (48%), Gaps = 4/62 (6%) Frame = -1 Query: 453 EIVKHAW---KRYNLSLGLGLNKVA-GKVFRIGHLGHLNELQLLGCLGGVEMVLKDIGYP 286 E+ AW RYNLSLGLGLNKVA GKVFR D+GYP Sbjct: 99 ELAVEAWGLSNRYNLSLGLGLNKVAGGKVFR------------------------DVGYP 134 Query: 285 VK 280 VK Sbjct: 135 VK 136
>SPYA_RABIT (P31030) Serine--pyruvate aminotransferase (EC 2.6.1.51) (SPT)| (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 392 Score = 39.3 bits (90), Expect = 0.012 Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 1/112 (0%) Frame = -1 Query: 690 DGKSKM-DYTPSIQXXXXXXXXXXXLFEEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEK 514 DGK +M +T + L E+GL+ +RH + + GL+ + Sbjct: 254 DGKPRMYHHTTPVIGIFALRESLALLVEQGLEKSWQRHREVAQHLYRRLQELGLQLFVKD 313 Query: 513 EENFSDTVTAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLG 358 TVT V+VP +IV + + + + GL A KV RIG LG Sbjct: 314 PALRLPTVTTVIVPASYRWRDIVSYVMHHFGIEITGGLGPSADKVLRIGLLG 365
>SPYA_MOUSE (O35423) Serine--pyruvate aminotransferase, mitochondrial precursor| (EC 2.6.1.51) (SPT) (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 413 Score = 35.8 bits (81), Expect = 0.13 Identities = 24/86 (27%), Positives = 38/86 (44%) Frame = -1 Query: 612 EEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTVTAVVVPPYIDSSEIVKHAW 433 E GL+N +RH + GLK + E T+T V Y + +IV + Sbjct: 303 ERGLENCWRRHREATAHLHKHLQEMGLKFFVKDPEIRLPTITTVTAAGY-NWRDIVSYVL 361 Query: 432 KRYNLSLGLGLNKVAGKVFRIGHLGH 355 +++ + GL +V RIG LG+ Sbjct: 362 DHFSIEISGGLGPTEERVLRIGLLGY 387
>LAS17_YEAST (Q12446) Proline-rich protein LAS17| Length = 633 Score = 32.7 bits (73), Expect = 1.1 Identities = 16/32 (50%), Positives = 17/32 (53%), Gaps = 1/32 (3%) Frame = +3 Query: 237 NSRGTPPRPPRRCQAS-PGTRCP*APSPPRRG 329 N+R PP PP R G R P P PPRRG Sbjct: 320 NNRPVPPPPPMRTTTEGSGVRLPAPPPPPRRG 351
>CEFD_NOCLA (Q03046) Isopenicillin N epimerase (EC 5.1.1.17)| Length = 398 Score = 32.7 bits (73), Expect = 1.1 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 3/85 (3%) Frame = -1 Query: 615 FEEGLDN--VIKRHTRLGTATRLAVAAW-GLKNCTEKEENFSDTVTAVVVPPYIDSSEIV 445 F+ GL + V +R L TR ++ W GL+ T S +TA +PP D++ + Sbjct: 292 FQAGLGHGRVRERMRELAAFTRERLSGWRGLEPVTPAHPGLSGAMTAFRLPPGTDTAGLR 351 Query: 444 KHAWKRYNLSLGLGLNKVAGKVFRI 370 W R+ + + + L++ G + R+ Sbjct: 352 HGLWDRFRIDVPV-LDRPDGPLLRV 375
>POLN_RUBVT (P13889) Nonstructural polyprotein [Contains: Protease (EC| 3.4.22.-) (p150); RNA-directed RNA polymerase/helicase (EC 2.7.7.48) (EC 3.6.1.-) (p90)] Length = 2115 Score = 31.6 bits (70), Expect = 2.5 Identities = 15/33 (45%), Positives = 19/33 (57%) Frame = +3 Query: 237 NSRGTPPRPPRRCQASPGTRCP*APSPPRRGNP 335 ++RGTPP P R P P P+PPR G+P Sbjct: 740 DARGTPPPAPAR---DPPPPAPSPPAPPRAGDP 769
>F100A_RAT (Q6AXN0) Protein FAM100A| Length = 176 Score = 31.6 bits (70), Expect = 2.5 Identities = 15/44 (34%), Positives = 20/44 (45%) Frame = +2 Query: 239 FERYAAAAATPLPSFTGYPMSLSTISTPPRQPRSCSSLRWPRWP 370 F R A+ + +G PM+ S S PP P + S P WP Sbjct: 81 FSRLKASESFHSGGSSGSPMATSATSPPPHFPHATGSFATPSWP 124
>YGHE_ECOLI (Q46833) Putative general secretion pathway protein L-type yghE| Length = 286 Score = 29.6 bits (65), Expect = 9.5 Identities = 17/53 (32%), Positives = 22/53 (41%) Frame = +2 Query: 215 LEGMRGVEFERYAAAAATPLPSFTGYPMSLSTISTPPRQPRSCSSLRWPRWPI 373 L G + ER A LP+ T Y + T P QPR +W RW + Sbjct: 87 LSAWAGADAERLTVTA---LPAITTYGEPEGNLLTGPWQPRVSYRKQWARWRV 136 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,276,090 Number of Sequences: 219361 Number of extensions: 1615891 Number of successful extensions: 6158 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 5476 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6131 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7196276819 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
