ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal5j22 |
|---|---|
| Clone Library Name | barley_pub |
>LRP11_MOUSE (Q8CB67) Low-density lipoprotein receptor-related protein 11| precursor Length = 483 Score = 33.1 bits (74), Expect = 0.66 Identities = 19/51 (37%), Positives = 25/51 (49%) Frame = -2 Query: 491 GCSKSCSKWQLISDSGMHVSAELTKNGTRVCLDAGPDGVITTDQCKCLTED 339 GCS +CS++ DSG + L +G R C PDG D C+ L D Sbjct: 289 GCSSACSRYHFFCDSGCCIDIALACDGVRQC----PDG-SDEDFCQNLALD 334
>HXB6B_BRARE (Q9YGT4) Homeobox protein Hox-B6b (Hox-A7)| Length = 224 Score = 32.3 bits (72), Expect = 1.1 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 11/45 (24%) Frame = -2 Query: 377 VITTDQCKC-----------LTEDPTCDPESQWFKVISSSRGMPG 276 V+T DQCK TED C P W + ++S GMPG Sbjct: 100 VLTQDQCKTDCTEQGTERYFSTEDKPCTPVYPWMQRMNSCNGMPG 144
>MT2_BRARP (Q39269) Metallothionein-like protein BIF98| Length = 80 Score = 31.6 bits (70), Expect = 1.9 Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 4/68 (5%) Frame = -2 Query: 515 GDTAKLGTGCSKSCSKWQLISDSGMHVSAELTKNGTRVCL----DAGPDGVITTDQCKCL 348 G K G GC C + + SG + E G + +A +GV D+CKC Sbjct: 11 GSGCKCGNGCG-GCKMYPDLGFSGESTTTETFVFGVAPAMKNQYEASGEGVAENDRCKC- 68 Query: 347 TEDPTCDP 324 D CDP Sbjct: 69 GSDCKCDP 76
>MT2_BRARA (P69164) Metallothionein-like protein type 2| Length = 80 Score = 30.8 bits (68), Expect = 3.3 Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 4/68 (5%) Frame = -2 Query: 515 GDTAKLGTGCSKSCSKWQLISDSGMHVSAELTKNGTRVCL----DAGPDGVITTDQCKCL 348 G K G GC C + + SG + E G + +A +GV D CKC Sbjct: 11 GSGCKCGNGCG-GCKMYPDLGFSGESTTTETFVFGVAPAMKNQYEASGEGVAENDACKC- 68 Query: 347 TEDPTCDP 324 D CDP Sbjct: 69 GSDCKCDP 76
>MT22_BRAJU (P69163) Metallothionein-like protein type 2, MT2-18| Length = 80 Score = 30.8 bits (68), Expect = 3.3 Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 4/68 (5%) Frame = -2 Query: 515 GDTAKLGTGCSKSCSKWQLISDSGMHVSAELTKNGTRVCL----DAGPDGVITTDQCKCL 348 G K G GC C + + SG + E G + +A +GV D CKC Sbjct: 11 GSGCKCGNGCG-GCKMYPDLGFSGESTTTETFVFGVAPAMKNQYEASGEGVAENDACKC- 68 Query: 347 TEDPTCDP 324 D CDP Sbjct: 69 GSDCKCDP 76
>EFS_MOUSE (Q64355) Embryonal Fyn-associated substrate (SRC-interacting| protein) (Signal-integrating protein) Length = 560 Score = 30.8 bits (68), Expect = 3.3 Identities = 16/58 (27%), Positives = 28/58 (48%) Frame = +1 Query: 367 VVMTPSGPASKHTLVPFLVSSAETCIPESDISCHFEQDLLQPVPSFAVSPTDLASRHC 540 V + P+GPA K +L P + + P + C ++ + P P+ S + L +R C Sbjct: 63 VKLLPAGPAPKPSLCPASPTQPGSSCPTPERGCEEQEVYVIPPPARPCSASGLPARSC 120
>ZN238_HUMAN (Q99592) Zinc finger protein 238 (Transcriptional repressor RP58)| (58 kDa repressor protein) (Zinc finger protein C2H2-171) (Translin-associated zinc finger protein 1) (TAZ-1) (Zinc finger and BTB domain-containing protein 18) Length = 522 Score = 30.4 bits (67), Expect = 4.3 Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 4/110 (3%) Frame = -2 Query: 587 AWNYTSTYELVLKQTGQCLE-AKSVGDTAKLGTGCSKSCSKWQLISDSGMHVSAELTKNG 411 A +Y Y++V + E A + D+ K S K + +SD H++ +L + Sbjct: 100 AASYLHMYDIVKVCKKKLKEKATTEADSTKKEEDASSCSDKVESLSDGSSHIAGDLPSDE 159 Query: 410 TRVCLDAGPDGVITTDQCKCLTEDPTCDPESQWFKVISSSRGMP---GEA 270 D G D + K D +P + W ++ S S G+P GEA Sbjct: 160 -----DEGEDEKLNILPSK---RDLAAEPGNMWMRLPSDSAGIPQAGGEA 201
>STHY_ARATH (Q9SYM2) Putative salt tolerance-like protein At1g78600| Length = 299 Score = 30.4 bits (67), Expect = 4.3 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 8/75 (10%) Frame = -3 Query: 235 LQHQVCRGSNLDTWCA------CVLLEDKVVQANSTMIWEVTRKMSAS-SRTPVCIMYHD 77 +Q VC + C C ++K+ AN +SAS S P C + + Sbjct: 3 IQCNVCEAAEATVLCCADEAALCWACDEKIHAANKLAGKHQRVPLSASASSIPKCDICQE 62 Query: 76 ISTFFFC-QNKSLVC 35 S FFFC Q+++L+C Sbjct: 63 ASGFFFCLQDRALLC 77
>ZN238_MOUSE (Q9WUK6) Zinc finger protein 238 (Zfp-238) (Transcriptional| repressor RP58) (58 kDa repressor protein) Length = 522 Score = 30.0 bits (66), Expect = 5.6 Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 4/110 (3%) Frame = -2 Query: 587 AWNYTSTYELVLKQTGQCLE-AKSVGDTAKLGTGCSKSCSKWQLISDSGMHVSAELTKNG 411 A +Y Y++V + E A + D+ K S K + +SD H++ +L + Sbjct: 100 AASYLHMYDIVKVCKKKLKEKATTEADSTKKEEDASSCSDKVESLSDGSSHMAGDLPSDE 159 Query: 410 TRVCLDAGPDGVITTDQCKCLTEDPTCDPESQWFKVISSSRGMP---GEA 270 D G D + K D +P + W ++ S S G+P GEA Sbjct: 160 -----DEGEDDKLNILPSK---RDLAAEPGNMWMRLPSDSAGIPQAGGEA 201
>Y2027_VIBCH (Q9KQH1) Maf-like protein VC2027| Length = 193 Score = 29.6 bits (65), Expect = 7.3 Identities = 16/46 (34%), Positives = 24/46 (52%) Frame = -2 Query: 476 CSKWQLISDSGMHVSAELTKNGTRVCLDAGPDGVITTDQCKCLTED 339 C + LI ++ H+ L +N R C A P VI +DQ C+ +D Sbjct: 33 CDETPLIGETPEHLLMRLAENKARSCFLADPSLVIGSDQV-CVIDD 77
>LRP1B_HUMAN (Q9NZR2) Low-density lipoprotein receptor-related protein 1B| precursor (Low-density lipoprotein receptor-related protein-deleted in tumor) (LRP-DIT) Length = 4599 Score = 29.6 bits (65), Expect = 7.3 Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 9/72 (12%) Frame = -2 Query: 542 GQCLEAK---------SVGDTAKLGTGCSKSCSKWQLISDSGMHVSAELTKNGTRVCLDA 390 GQC+ AK G+ K S +CS + I S +SA L NG C D Sbjct: 3563 GQCIPAKWKCDGHEDCKYGEDEKSCEPASPTCSSREYICASDGCISASLKCNGEYDCAD- 3621 Query: 389 GPDGVITTDQCK 354 G D + +CK Sbjct: 3622 GSDEMDCVTECK 3633
>HAM1_ANASP (Q8YM52) HAM1 protein homolog| Length = 196 Score = 29.3 bits (64), Expect = 9.6 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 5/65 (7%) Frame = -2 Query: 608 GPCDESNAWNYTSTYELVLKQTGQCLEAKSVGDT-----AKLGTGCSKSCSKWQLISDSG 444 G E A+ + +EL LK T LE + GDT + +K+ W + DSG Sbjct: 13 GKLREMQAYLANTDWELTLKPTE--LEVEETGDTFASNACLKASEVAKATGNWAIADDSG 70 Query: 443 MHVSA 429 + V A Sbjct: 71 LQVDA 75
>DBF20_YEAST (P32328) Serine/threonine-protein kinase DBF20 (EC 2.7.11.1)| Length = 564 Score = 29.3 bits (64), Expect = 9.6 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 2/44 (4%) Frame = -3 Query: 367 RINASA*PKIQPATL--RASGSKLYRVVEACQVRPLFYSCRLLD 242 RI+ + PK P RAS SK RVV CQ+ L Y C + D Sbjct: 69 RISLNHSPKKLPKDFHERASQSKTQRVVNVCQLYFLDYYCDMFD 112
>PDC2_TOBAC (P51846) Pyruvate decarboxylase isozyme 2 (EC 4.1.1.1) (PDC)| Length = 614 Score = 29.3 bits (64), Expect = 9.6 Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 5/75 (6%) Frame = -2 Query: 608 GPCDESNAWNYTSTYELVLKQTGQCLEAK-----SVGDTAKLGTGCSKSCSKWQLISDSG 444 GP + WNYT + + G C K + + TG K C + + Sbjct: 530 GPYNVIKNWNYTGLVDAIHNGEGNCWTMKVRTEEELTEAIATATGEKKDCLCFIEVIVHK 589 Query: 443 MHVSAELTKNGTRVC 399 S EL + G+RVC Sbjct: 590 DDTSKELLEWGSRVC 604
>LDLR_PIG (Q28832) Low-density lipoprotein receptor (LDL receptor) (Fragment)| Length = 811 Score = 29.3 bits (64), Expect = 9.6 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Frame = -2 Query: 491 GCS-KSCSKWQLISDSGMHVSAELTKNGTRVCLDAGPDGVITTDQCKCLTEDPTCDPES 318 GCS K+CS+ + G ++ + + R CLD +D+ C T PTC P S Sbjct: 72 GCSPKTCSQDEFRCQDGKCIAPKFVCDSDRDCLDG-------SDEASCPT--PTCGPAS 121 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 95,960,262 Number of Sequences: 219361 Number of extensions: 2140936 Number of successful extensions: 5393 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 5187 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5392 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5538924943 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
