Clone Information

BLAST Search Result

Clone Name	rbaal5j17
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AC137752.4\| Oryza sativa (japonica cultivar-group) chromosome...	131	3e-27
2	dbj\|AP008217.1\| Oryza sativa (japonica cultivar-group) genomic D...	131	3e-27
3	dbj\|AK099562.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	131	3e-27
4	gb\|DP000010.1\| Oryza sativa (japonica cultivar-group) chromosome...	131	3e-27
5	gb\|AY108199.1\| Zea mays PCO076094 mRNA sequence	101	3e-18
6	gb\|AC121780.3\| Mus musculus BAC clone RP23-360J14 from chromosom...	44	0.55
7	gb\|AC122012.3\| Mus musculus BAC clone RP24-353N4 from 5, complet...	44	0.55
8	ref\|XM_629230.1\| Dictyostelium discoideum hypothetical protein (...	42	2.2
9	ref\|NM_002657.2\| Homo sapiens pleiomorphic adenoma gene-like 2 (...	42	2.2
10	gb\|AC113095.14\| Mus musculus chromosome 9, clone RP23-311A1, com...	42	2.2
11	gb\|AC092098.3\| Homo sapiens BAC clone RP11-533K11 from 7, comple...	42	2.2
12	emb\|AL121897.32\|HSA392M18 Human DNA sequence from clone RP11-392...	42	2.2
13	gb\|AC162170.5\| Mus musculus chromosome 1, clone RP23-240G10, com...	42	2.2
14	gb\|CP000077.1\| Sulfolobus acidocaldarius DSM 639, complete genome	42	2.2
15	gb\|AC098848.7\| Homo sapiens chromosome 18, clone RP11-839G9, com...	42	2.2
16	dbj\|D83784.1\| Homo sapiens mRNA for KIAA0198 gene, partial cds	42	2.2
17	gb\|AE010256.1\| Pyrococcus furiosus DSM 3638, section 131 of 173 ...	42	2.2
18	gb\|AC083870.2\|AC083870 Homo sapiens chromosome 7 clone RP11-248K...	42	2.2
19	gb\|AC019014.1\|AC019014 Homo sapiens clone RP11-221G19 from 7q31,...	42	2.2
20	gb\|AF006005.1\|AF006005 Homo sapiens zinc finger protein PLAGL2 (...	42	2.2
21	dbj\|AK026951.1\| Homo sapiens cDNA: FLJ23298 fis, clone HEP10717	42	2.2
22	emb\|AL772348.2\| Mouse DNA sequence from clone RP23-316A19 on chr...	42	2.2
23	gb\|AC125407.4\| Mus musculus BAC clone RP23-94F17 from chromosome...	40	8.7
24	ref\|NM_017221.1\| Rattus norvegicus sonic hedgehog homolog (Droso...	40	8.7
25	gb\|AC159972.5\| Mus musculus chromosome 1, clone RP23-35D23, comp...	40	8.7
26	gb\|AE017354.1\| Legionella pneumophila subsp. pneumophila str. Ph...	40	8.7
27	ref\|NM_009170.2\| Mus musculus sonic hedgehog (Shh), mRNA	40	8.7
28	gb\|BC063087.1\| Mus musculus sonic hedgehog, mRNA (cDNA clone MGC...	40	8.7
29	gb\|AC134530.3\| Mus musculus BAC clone RP24-507K16 from chromosom...	40	8.7
30	gb\|AC129091.19\| Medicago truncatula clone mth2-15j7, complete se...	40	8.7
31	gb\|AC102570.8\| Mus musculus, clone RP23-228G18, complete sequence	40	8.7
32	emb\|AL591643.4\| Human DNA sequence from clone CTD-2076M15 on chr...	40	8.7
33	emb\|AL356958.11\| Human DNA sequence from clone RP1-51P18 on chro...	40	8.7
34	gb\|AC105411.1\| Homo sapiens chromosome 16 clone RP11-354A20, com...	40	8.7
35	dbj\|AK077688.1\| Mus musculus 8 days embryo whole body cDNA, RIKE...	40	8.7
36	dbj\|AK052447.1\| Mus musculus 13 days embryo lung cDNA, RIKEN ful...	40	8.7
37	gb\|AC108483.3\| Homo sapiens chromosome 16 clone RP11-170P24, com...	40	8.7
38	gb\|AC012671.7\| Homo sapiens BAC clone RP11-554H10 from 2, comple...	40	8.7
39	gb\|AC112688.10\| Mus musculus chromosome 5, clone RP23-258C13, co...	40	8.7
40	dbj\|BA000011.4\| Thermoplasma volcanium GSS1 DNA, complete genome	40	8.7
41	dbj\|AB185174.1\| Meriones unguiculatus Shh mRNA for sonic hedgeho...	40	8.7
42	gb\|AC154341.2\| Mus musculus BAC clone RP23-240C2 from 16, comple...	40	8.7
43	emb\|CT573507.2\| Medicago truncatula chromosome 5 clone mth2-72p1...	40	8.7
44	gb\|AC116797.11\| Mus musculus chromosome 13, clone RP24-327I15, c...	40	8.7
45	dbj\|AP000757.4\| Homo sapiens genomic DNA, chromosome 11q clone:R...	40	8.7
46	emb\|AL078589.8\|HS1126I14 Human DNA sequence from clone RP5-1126I...	40	8.7
47	emb\|AL671873.15\| Mouse DNA sequence from clone RP23-382D17 on ch...	40	8.7
48	emb\|X76290.1\|MMSHH M.musculus (C57BL/6J) Shh mRNA	40	8.7
49	emb\|AL670464.12\| Mouse DNA sequence from clone RP23-12I24 on chr...	40	8.7
50	gb\|L27340.1\|RATVHH1X Rat (vhh-1) mRNA, complete cds	40	8.7
51	dbj\|AP003775.3\| Homo sapiens genomic DNA, chromosome 11q clone:R...	40	8.7

>gb|AC137752.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0041C22, complete sequence
          Length = 161172

 Score =  131 bits (66), Expect = 3e-27
 Identities = 117/134 (87%)
 Strand = Plus / Plus

                                                                         
Query: 498   agtgcccagctgtgcttctcgatgagattacaagcctcgttagtccgcagcttcgcgcat 557
             |||||||| ||||||||||| ||||||||| |||| |||   |  |||||| | ||||||
Sbjct: 94639 agtgcccaactgtgcttctcaatgagattagaagcttcgcatgagcgcagccttgcgcat 94698

                                                                         
Query: 558   aactccaaggtctttgggtcgaagcccatcatgtaactcttcaggtcatgaggatcaaca 617
             ||||||||||||||||| || |||||||||||||||||||||| ||||||  ||||||||
Sbjct: 94699 aactccaaggtctttggatcaaagcccatcatgtaactcttcaagtcatgcagatcaaca 94758

                           
Query: 618   acagaacttggttt 631
             |||||||| |||||
Sbjct: 94759 acagaactcggttt 94772



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 107/126 (84%)
 Strand = Plus / Plus

                                                                         
Query: 338   ttttcagctgtcctgcaacttgtatatctcatcaacatagtcttcggtatcccaaaggaa 397
             ||||||||| || ||||||||||| ||||| |||||||| || ||   ||||||||| ||
Sbjct: 94476 ttttcagctatcatgcaacttgtaaatctcgtcaacataatcctcaacatcccaaagaaa 94535

                                                                         
Query: 398   ggaaccgaatgcaatggcttcaagcagcagcctttttagggatgctggatcaagtatcac 457
             |||||| ||||||||||||||||||| ||  || ||||||||||  ||||| ||||||||
Sbjct: 94536 ggaaccaaatgcaatggcttcaagcaacaatctctttagggatgacggatcgagtatcac 94595

                   
Query: 458   cgcctc 463
              |||||
Sbjct: 94596 tgcctc 94601

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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  131 bits (66), Expect = 3e-27
 Identities = 117/134 (87%)
 Strand = Plus / Plus

                                                                            
Query: 498      agtgcccagctgtgcttctcgatgagattacaagcctcgttagtccgcagcttcgcgcat 557
                |||||||| ||||||||||| ||||||||| |||| |||   |  |||||| | ||||||
Sbjct: 14871572 agtgcccaactgtgcttctcaatgagattagaagcttcgcatgagcgcagccttgcgcat 14871631

                                                                            
Query: 558      aactccaaggtctttgggtcgaagcccatcatgtaactcttcaggtcatgaggatcaaca 617
                ||||||||||||||||| || |||||||||||||||||||||| ||||||  ||||||||
Sbjct: 14871632 aactccaaggtctttggatcaaagcccatcatgtaactcttcaagtcatgcagatcaaca 14871691

                              
Query: 618      acagaacttggttt 631
                |||||||| |||||
Sbjct: 14871692 acagaactcggttt 14871705



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 107/126 (84%)
 Strand = Plus / Plus

                                                                            
Query: 338      ttttcagctgtcctgcaacttgtatatctcatcaacatagtcttcggtatcccaaaggaa 397
                ||||||||| || ||||||||||| ||||| |||||||| || ||   ||||||||| ||
Sbjct: 14871409 ttttcagctatcatgcaacttgtaaatctcgtcaacataatcctcaacatcccaaagaaa 14871468

                                                                            
Query: 398      ggaaccgaatgcaatggcttcaagcagcagcctttttagggatgctggatcaagtatcac 457
                |||||| ||||||||||||||||||| ||  || ||||||||||  ||||| ||||||||
Sbjct: 14871469 ggaaccaaatgcaatggcttcaagcaacaatctctttagggatgacggatcgagtatcac 14871528

                      
Query: 458      cgcctc 463
                 |||||
Sbjct: 14871529 tgcctc 14871534

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>dbj|AK099562.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013034L13, full
            insert sequence
          Length = 1255

 Score =  131 bits (66), Expect = 3e-27
 Identities = 117/134 (87%)
 Strand = Plus / Minus

                                                                        
Query: 498  agtgcccagctgtgcttctcgatgagattacaagcctcgttagtccgcagcttcgcgcat 557
            |||||||| ||||||||||| ||||||||| |||| |||   |  |||||| | ||||||
Sbjct: 1008 agtgcccaactgtgcttctcaatgagattagaagcttcgcatgagcgcagccttgcgcat 949

                                                                        
Query: 558  aactccaaggtctttgggtcgaagcccatcatgtaactcttcaggtcatgaggatcaaca 617
            ||||||||||||||||| || |||||||||||||||||||||| ||||||  ||||||||
Sbjct: 948  aactccaaggtctttggatcaaagcccatcatgtaactcttcaagtcatgcagatcaaca 889

                          
Query: 618  acagaacttggttt 631
            |||||||| |||||
Sbjct: 888  acagaactcggttt 875



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 107/126 (84%)
 Strand = Plus / Minus

                                                                        
Query: 338  ttttcagctgtcctgcaacttgtatatctcatcaacatagtcttcggtatcccaaaggaa 397
            ||||||||| || ||||||||||| ||||| |||||||| || ||   ||||||||| ||
Sbjct: 1171 ttttcagctatcatgcaacttgtaaatctcgtcaacataatcctcaacatcccaaagaaa 1112

                                                                        
Query: 398  ggaaccgaatgcaatggcttcaagcagcagcctttttagggatgctggatcaagtatcac 457
            |||||| ||||||||||||||||||| ||  || ||||||||||  ||||| ||||||||
Sbjct: 1111 ggaaccaaatgcaatggcttcaagcaacaatctctttagggatgacggatcgagtatcac 1052

                  
Query: 458  cgcctc 463
             |||||
Sbjct: 1051 tgcctc 1046

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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  131 bits (66), Expect = 3e-27
 Identities = 117/134 (87%)
 Strand = Plus / Plus

                                                                            
Query: 498      agtgcccagctgtgcttctcgatgagattacaagcctcgttagtccgcagcttcgcgcat 557
                |||||||| ||||||||||| ||||||||| |||| |||   |  |||||| | ||||||
Sbjct: 14951540 agtgcccaactgtgcttctcaatgagattagaagcttcgcatgagcgcagccttgcgcat 14951599

                                                                            
Query: 558      aactccaaggtctttgggtcgaagcccatcatgtaactcttcaggtcatgaggatcaaca 617
                ||||||||||||||||| || |||||||||||||||||||||| ||||||  ||||||||
Sbjct: 14951600 aactccaaggtctttggatcaaagcccatcatgtaactcttcaagtcatgcagatcaaca 14951659

                              
Query: 618      acagaacttggttt 631
                |||||||| |||||
Sbjct: 14951660 acagaactcggttt 14951673



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 107/126 (84%)
 Strand = Plus / Plus

                                                                            
Query: 338      ttttcagctgtcctgcaacttgtatatctcatcaacatagtcttcggtatcccaaaggaa 397
                ||||||||| || ||||||||||| ||||| |||||||| || ||   ||||||||| ||
Sbjct: 14951377 ttttcagctatcatgcaacttgtaaatctcgtcaacataatcctcaacatcccaaagaaa 14951436

                                                                            
Query: 398      ggaaccgaatgcaatggcttcaagcagcagcctttttagggatgctggatcaagtatcac 457
                |||||| ||||||||||||||||||| ||  || ||||||||||  ||||| ||||||||
Sbjct: 14951437 ggaaccaaatgcaatggcttcaagcaacaatctctttagggatgacggatcgagtatcac 14951496

                      
Query: 458      cgcctc 463
                 |||||
Sbjct: 14951497 tgcctc 14951502

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>gb|AY108199.1| Zea mays PCO076094 mRNA sequence
          Length = 861

 Score =  101 bits (51), Expect = 3e-18
 Identities = 170/209 (81%), Gaps = 3/209 (1%)
 Strand = Plus / Minus

                                                                       
Query: 387 tcccaaaggaaggaaccgaatgcaatggcttcaagcagcagcctttttagggatgctgga 446
           ||||| ||||||||||||||||| |||||||||||||| || ||||| |||||||  |||
Sbjct: 580 tcccagaggaaggaaccgaatgcgatggcttcaagcagtagtcttttcagggatgaagga 521

                                                                       
Query: 447 tcaagtatcaccgcctcgtcaatctccgtggag---cccatcttttctccaaagagtgcc 503
           |||||||| ||||| || ||| |||||  ||||    |||| |   | ||||| || |||
Sbjct: 520 tcaagtataaccgcttcatcattctcctgggagagttccatgtcgcccccaaaaagagcc 461

                                                                       
Query: 504 cagctgtgcttctcgatgagattacaagcctcgttagtccgcagcttcgcgcataactcc 563
           ||||||||| |||||||||||||| |||| ||    |  |||||||||||||| | || |
Sbjct: 460 cagctgtgcctctcgatgagattagaagcttcagatgagcgcagcttcgcgcaaagctgc 401

                                        
Query: 564 aaggtctttgggtcgaagcccatcatgta 592
           ||||||||||| ||||| ||||| |||||
Sbjct: 400 aaggtctttggatcgaatcccattatgta 372

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>gb|AC121780.3| Mus musculus BAC clone RP23-360J14 from chromosome 5, complete sequence
          Length = 217140

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 256   tacaaggtctcaggaatcttct 277
             ||||||||||||||||||||||
Sbjct: 30741 tacaaggtctcaggaatcttct 30720

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>gb|AC122012.3| Mus musculus BAC clone RP24-353N4 from 5, complete sequence
          Length = 188867

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 256    tacaaggtctcaggaatcttct 277
              ||||||||||||||||||||||
Sbjct: 178064 tacaaggtctcaggaatcttct 178043

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>ref|XM_629230.1| Dictyostelium discoideum hypothetical protein (DDB0191837), partial
           mRNA
          Length = 2814

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 363 atctcatcaacatagtcttcggtat 387
           ||||||||||||||||||| |||||
Sbjct: 408 atctcatcaacatagtctttggtat 432

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>ref|NM_002657.2| Homo sapiens pleiomorphic adenoma gene-like 2 (PLAGL2), mRNA
          Length = 5640

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 273  cttctgcaaactcttcttcca 293
            |||||||||||||||||||||
Sbjct: 2895 cttctgcaaactcttcttcca 2875

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>gb|AC113095.14| Mus musculus chromosome 9, clone RP23-311A1, complete sequence
          Length = 205429

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 181    aggctacatattttagcacct 201
              |||||||||||||||||||||
Sbjct: 128505 aggctacatattttagcacct 128485

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>gb|AC092098.3| Homo sapiens BAC clone RP11-533K11 from 7, complete sequence
          Length = 198786

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 239   taatttcctaaaatatatacaaggt 263
             ||||||||| |||||||||||||||
Sbjct: 46392 taatttcctgaaatatatacaaggt 46416

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>emb|AL121897.32|HSA392M18 Human DNA sequence from clone RP11-392M18 on chromosome 20 Contains
            the TSPYL3 gene for TSPY-like 3 (pseudogene), the PLAGL2
            gene for pleiomorphic adenoma-like protein 2, the POFUT1
            gene for protein O-fucosyltransferase 1, the KIF3B gene
            for kinesin family member 3B and three CpG islands,
            complete sequence
          Length = 145414

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 273  cttctgcaaactcttcttcca 293
            |||||||||||||||||||||
Sbjct: 8216 cttctgcaaactcttcttcca 8236

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>gb|AC162170.5| Mus musculus chromosome 1, clone RP23-240G10, complete sequence
          Length = 159806

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 311    actgctcaggtatcttctgga 331
              |||||||||||||||||||||
Sbjct: 105900 actgctcaggtatcttctgga 105880

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>gb|CP000077.1| Sulfolobus acidocaldarius DSM 639, complete genome
          Length = 2225959

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 239    taatttcctaaaatatatacaaggtctca 267
              ||||| ||||||||||| |||||||||||
Sbjct: 184783 taattacctaaaatataaacaaggtctca 184811

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>gb|AC098848.7| Homo sapiens chromosome 18, clone RP11-839G9, complete sequence
          Length = 189315

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 341  tcagctgtcctgcaacttgtatatc 365
            ||||||||||||| |||||||||||
Sbjct: 4648 tcagctgtcctgctacttgtatatc 4624

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>dbj|D83784.1| Homo sapiens mRNA for KIAA0198 gene, partial cds
          Length = 5638

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 273  cttctgcaaactcttcttcca 293
            |||||||||||||||||||||
Sbjct: 2893 cttctgcaaactcttcttcca 2873

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>gb|AE010256.1| Pyrococcus furiosus DSM 3638, section 131 of 173 of the complete
            genome
          Length = 8250

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 248  aaaatatatacaaggtctcaggaat 272
            ||||||||||||||||||| |||||
Sbjct: 1808 aaaatatatacaaggtctcgggaat 1832

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>gb|AC083870.2|AC083870 Homo sapiens chromosome 7 clone RP11-248K17, complete sequence
          Length = 171530

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 19    ttcttacatctgaagatgcac 39
             |||||||||||||||||||||
Sbjct: 20747 ttcttacatctgaagatgcac 20767

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>gb|AC019014.1|AC019014 Homo sapiens clone RP11-221G19 from 7q31, complete sequence
          Length = 155656

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 19    ttcttacatctgaagatgcac 39
             |||||||||||||||||||||
Sbjct: 55482 ttcttacatctgaagatgcac 55462

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>gb|AF006005.1|AF006005 Homo sapiens zinc finger protein PLAGL2 (PLAGL2) mRNA, complete cds
          Length = 4051

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 273  cttctgcaaactcttcttcca 293
            |||||||||||||||||||||
Sbjct: 2895 cttctgcaaactcttcttcca 2875

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>dbj|AK026951.1| Homo sapiens cDNA: FLJ23298 fis, clone HEP10717
          Length = 3346

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 273 cttctgcaaactcttcttcca 293
           |||||||||||||||||||||
Sbjct: 584 cttctgcaaactcttcttcca 564

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>emb|AL772348.2| Mouse DNA sequence from clone RP23-316A19 on chromosome X, complete
              sequence
          Length = 173365

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 240    aatttcctaaaatatatacaa 260
              |||||||||||||||||||||
Sbjct: 126601 aatttcctaaaatatatacaa 126621

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>gb|AC125407.4| Mus musculus BAC clone RP23-94F17 from chromosome 5, complete sequence
          Length = 233082

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 499   gtgcccagctgtgcttctcgatga 522
             ||||||||||||||| ||||||||
Sbjct: 19021 gtgcccagctgtgctcctcgatga 19044

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>ref|NM_017221.1| Rattus norvegicus sonic hedgehog homolog (Drosophila) (Shh), mRNA
          Length = 1715

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 499  gtgcccagctgtgcttctcgatga 522
            ||||||||||||||| ||||||||
Sbjct: 1392 gtgcccagctgtgctcctcgatga 1369

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>gb|AC159972.5| Mus musculus chromosome 1, clone RP23-35D23, complete sequence
          Length = 199094

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 240   aatttcctaaaatatataca 259
             ||||||||||||||||||||
Sbjct: 67275 aatttcctaaaatatataca 67294

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>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete
               genome
          Length = 3397754

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 152     tgcctgcaaggtttttatat 171
               ||||||||||||||||||||
Sbjct: 2728896 tgcctgcaaggtttttatat 2728915

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>ref|NM_009170.2| Mus musculus sonic hedgehog (Shh), mRNA
          Length = 2716

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 499  gtgcccagctgtgcttctcgatga 522
            ||||||||||||||| ||||||||
Sbjct: 1403 gtgcccagctgtgctcctcgatga 1380

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>gb|BC063087.1| Mus musculus sonic hedgehog, mRNA (cDNA clone MGC:69975
            IMAGE:6516263), complete cds
          Length = 2716

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 499  gtgcccagctgtgcttctcgatga 522
            ||||||||||||||| ||||||||
Sbjct: 1403 gtgcccagctgtgctcctcgatga 1380

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>gb|AC134530.3| Mus musculus BAC clone RP24-507K16 from chromosome 5, complete sequence
          Length = 215112

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 499   gtgcccagctgtgcttctcgatga 522
             ||||||||||||||| ||||||||
Sbjct: 22089 gtgcccagctgtgctcctcgatga 22066

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>gb|AC129091.19| Medicago truncatula clone mth2-15j7, complete sequence
          Length = 106540

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 227   aaaagaagaaggtaatttcctaaaatat 254
             |||||||||||||| ||| |||||||||
Sbjct: 30696 aaaagaagaaggtatttttctaaaatat 30723

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>gb|AC102570.8| Mus musculus, clone RP23-228G18, complete sequence
          Length = 228644

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 240   aatttcctaaaatatataca 259
             ||||||||||||||||||||
Sbjct: 73400 aatttcctaaaatatataca 73381

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>emb|AL591643.4| Human DNA sequence from clone CTD-2076M15 on chromosome Xq23-24,
             complete sequence
          Length = 61143

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 176   aaaaaaggctacatatttta 195
             ||||||||||||||||||||
Sbjct: 52048 aaaaaaggctacatatttta 52067

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>emb|AL356958.11| Human DNA sequence from clone RP1-51P18 on chromosome 6 Contains part
             of the gene for a novel protein (KIAA1900), complete
             sequence
          Length = 26854

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 252   tatatacaaggtctcaggaa 271
             ||||||||||||||||||||
Sbjct: 19145 tatatacaaggtctcaggaa 19126

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>gb|AC105411.1| Homo sapiens chromosome 16 clone RP11-354A20, complete sequence
          Length = 172797

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 427    gcctttttagggatgctgga 446
              ||||||||||||||||||||
Sbjct: 138461 gcctttttagggatgctgga 138480

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>dbj|AK077688.1| Mus musculus 8 days embryo whole body cDNA, RIKEN full-length
            enriched library, clone:5730522J07 product:sonic hedgehog
            homolog, (Drosophila), full insert sequence
          Length = 2668

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 499  gtgcccagctgtgcttctcgatga 522
            ||||||||||||||| ||||||||
Sbjct: 1417 gtgcccagctgtgctcctcgatga 1394

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>dbj|AK052447.1| Mus musculus 13 days embryo lung cDNA, RIKEN full-length enriched
            library, clone:D430024L03 product:SONIC HEDGEHOG PROTEIN
            PRECURSOR (SHH) (HHG-1) homolog [Mus musculus], full
            insert sequence
          Length = 2692

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 499  gtgcccagctgtgcttctcgatga 522
            ||||||||||||||| ||||||||
Sbjct: 1417 gtgcccagctgtgctcctcgatga 1394

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>gb|AC108483.3| Homo sapiens chromosome 16 clone RP11-170P24, complete sequence
          Length = 163976

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 427   gcctttttagggatgctgga 446
             ||||||||||||||||||||
Sbjct: 11954 gcctttttagggatgctgga 11973

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>gb|AC012671.7| Homo sapiens BAC clone RP11-554H10 from 2, complete sequence
          Length = 198694

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 15     aatcttcttacatctgaagatgca 38
              |||| |||||||||||||||||||
Sbjct: 118977 aatcatcttacatctgaagatgca 119000

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>gb|AC112688.10| Mus musculus chromosome 5, clone RP23-258C13, complete sequence
          Length = 181175

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 240    aatttcctaaaatatataca 259
              ||||||||||||||||||||
Sbjct: 119311 aatttcctaaaatatataca 119292

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>dbj|BA000011.4| Thermoplasma volcanium GSS1 DNA, complete genome
          Length = 1584804

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 214     tttacatgcgcagaaaagaa 233
               ||||||||||||||||||||
Sbjct: 1315836 tttacatgcgcagaaaagaa 1315855

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>dbj|AB185174.1| Meriones unguiculatus Shh mRNA for sonic hedgehog, complete cds
          Length = 1679

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 499  gtgcccagctgtgcttctcgatga 522
            ||||||||||||||| ||||||||
Sbjct: 1420 gtgcccagctgtgctcctcgatga 1397

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>gb|AC154341.2| Mus musculus BAC clone RP23-240C2 from 16, complete sequence
          Length = 163871

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 238   gtaatttcctaaaatatata 257
             ||||||||||||||||||||
Sbjct: 65186 gtaatttcctaaaatatata 65167

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>emb|CT573507.2| Medicago truncatula chromosome 5 clone mth2-72p17, COMPLETE SEQUENCE
          Length = 109575

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 250   aatatatacaaggtctcagg 269
             ||||||||||||||||||||
Sbjct: 96379 aatatatacaaggtctcagg 96360

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>gb|AC116797.11| Mus musculus chromosome 13, clone RP24-327I15, complete sequence
          Length = 145747

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 240   aatttcctaaaatatataca 259
             ||||||||||||||||||||
Sbjct: 89338 aatttcctaaaatatataca 89357

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>dbj|AP000757.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-728F11, complete
             sequences
          Length = 184926

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 269   gaatcttctgcaaactcttc 288
             ||||||||||||||||||||
Sbjct: 93031 gaatcttctgcaaactcttc 93012

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>emb|AL078589.8|HS1126I14 Human DNA sequence from clone RP5-1126I14 on chromosome 6q16.1-16.3,
             complete sequence
          Length = 19544

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 252   tatatacaaggtctcaggaa 271
             ||||||||||||||||||||
Sbjct: 11835 tatatacaaggtctcaggaa 11816

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>emb|AL671873.15| Mouse DNA sequence from clone RP23-382D17 on chromosome X, complete
             sequence
          Length = 213223

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 474   gtggagcccatcttttctccaaag 497
             ||||| ||||||||||||||||||
Sbjct: 20751 gtggaacccatcttttctccaaag 20774

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>emb|X76290.1|MMSHH M.musculus (C57BL/6J) Shh mRNA
          Length = 1314

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 499  gtgcccagctgtgcttctcgatga 522
            ||||||||||||||| ||||||||
Sbjct: 1078 gtgcccagctgtgctcctcgatga 1055

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>emb|AL670464.12| Mouse DNA sequence from clone RP23-12I24 on chromosome 4, complete
             sequence
          Length = 203558

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 241   atttcctaaaatatatacaa 260
             ||||||||||||||||||||
Sbjct: 34563 atttcctaaaatatatacaa 34582

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>gb|L27340.1|RATVHH1X Rat (vhh-1) mRNA, complete cds
          Length = 1715

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 499  gtgcccagctgtgcttctcgatga 522
            ||||||||||||||| ||||||||
Sbjct: 1392 gtgcccagctgtgctcctcgatga 1369

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>dbj|AP003775.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-206H19, complete
             sequences
          Length = 179680

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 481   ccatcttttctccaaagagt 500
             ||||||||||||||||||||
Sbjct: 70996 ccatcttttctccaaagagt 70977


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,132,063
Number of Sequences: 3902068
Number of extensions: 6132063
Number of successful extensions: 107000
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 106807
Number of HSP's gapped (non-prelim): 189
length of query: 635
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 612
effective length of database: 17,143,297,704
effective search space: 10491698194848
effective search space used: 10491698194848
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result