ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbaal5i19 |
|---|---|
| Clone Library Name | barley_pub |
>IMP3_MOUSE (Q921Y2) U3 small nucleolar ribonucleoprotein protein IMP3 (U3| snoRNP protein IMP3) Length = 184 Score = 176 bits (445), Expect = 7e-44 Identities = 78/147 (53%), Positives = 112/147 (76%) Frame = -1 Query: 657 QRYSLVDRDDYKKYNGICLMSQKLVNIIKQMDPRDPFRIEMTGMLLDKLYNMGVIPTKKS 478 +RY L R++Y +YN + ++L ++ + RDPFR+ + LLDKLY MG++PT+ S Sbjct: 35 RRYRLQRREEYTRYNQLSRAVRELARRLRDLPERDPFRVRASAALLDKLYAMGLVPTRGS 94 Query: 477 LVKCERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRVGPETVTDPAFLVTRNM 298 L C+ +S S+F RRRL T+++KL+ A+HL+ A+ ++EQGHVRVGP+ VTDPAFLVTR+M Sbjct: 95 LELCDSVSASSFCRRRLPTLLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSM 154 Query: 297 EDFITWVDSSKIKKKIMEYNGALDDYD 217 EDF+TWVDSSKIK+ ++EYN DD+D Sbjct: 155 EDFVTWVDSSKIKRHVLEYNEERDDFD 181
>IMP3_BOVIN (Q3T0M3) U3 small nucleolar ribonucleoprotein protein IMP3 (U3| snoRNP protein IMP3) Length = 184 Score = 172 bits (436), Expect = 8e-43 Identities = 76/147 (51%), Positives = 111/147 (75%) Frame = -1 Query: 657 QRYSLVDRDDYKKYNGICLMSQKLVNIIKQMDPRDPFRIEMTGMLLDKLYNMGVIPTKKS 478 +RY L R+DY +YN + ++L ++ + RDPFR+ + LLDKLY +G++PT+ S Sbjct: 35 RRYRLQRREDYTRYNQLSRAVRELARRLRDLPERDPFRVRSSAALLDKLYALGLVPTRGS 94 Query: 477 LVKCERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRVGPETVTDPAFLVTRNM 298 C+ ++ S+F RRRL T+++KL+ A+HL+ A+ ++EQGHVRVGP+ VTDPAFLVTR+M Sbjct: 95 QELCDFVTASSFCRRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSM 154 Query: 297 EDFITWVDSSKIKKKIMEYNGALDDYD 217 EDF+TWVDSSKIK+ ++EYN DD+D Sbjct: 155 EDFVTWVDSSKIKRHVLEYNEERDDFD 181
>IMP3_HUMAN (Q9NV31) U3 small nucleolar ribonucleoprotein protein IMP3 (U3| snoRNP protein IMP3) (BRMS2) Length = 184 Score = 171 bits (434), Expect = 1e-42 Identities = 76/147 (51%), Positives = 111/147 (75%) Frame = -1 Query: 657 QRYSLVDRDDYKKYNGICLMSQKLVNIIKQMDPRDPFRIEMTGMLLDKLYNMGVIPTKKS 478 +RY L R+DY +YN + ++L ++ + RD FR+ + LLDKLY +G++PT+ S Sbjct: 35 RRYRLQRREDYTRYNQLSRAVRELARRLRDLPERDQFRVRASAALLDKLYALGLVPTRGS 94 Query: 477 LVKCERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRVGPETVTDPAFLVTRNM 298 L C+ ++ S+F RRRL T+++KL+ A+HL+ A+ ++EQGHVRVGP+ VTDPAFLVTR+M Sbjct: 95 LELCDFVTASSFCRRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSM 154 Query: 297 EDFITWVDSSKIKKKIMEYNGALDDYD 217 EDF+TWVDSSKIK+ ++EYN DD+D Sbjct: 155 EDFVTWVDSSKIKRHVLEYNEERDDFD 181
>IMP3_SCHPO (O13835) U3 small nucleolar ribonucleoprotein protein imp3 (U3| snoRNP protein imp3) Length = 183 Score = 160 bits (405), Expect = 3e-39 Identities = 74/150 (49%), Positives = 109/150 (72%), Gaps = 1/150 (0%) Frame = -1 Query: 657 QRYSLVDRDDYKKYNGICLMSQKLVNIIKQMDPRDPFRIEMTGMLLDKLYNMGVIPTKKS 478 +RY + R++Y+KYN IC ++L + + +DP DPFR++ +LL+KL++MG++P+K Sbjct: 34 RRYHISKREEYQKYNIICGKFRQLAHRLSLLDPTDPFRLQYENLLLEKLFDMGILPSKSK 93 Query: 477 LVKCE-RLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRVGPETVTDPAFLVTRN 301 + E + +VSA RRRL IM KL+ ++ + EA IEQGHVRVGP +TDPA+LVTR+ Sbjct: 94 MSDIENKANVSAICRRRLPVIMCKLRMSQVVSEATRLIEQGHVRVGPHVITDPAYLVTRS 153 Query: 300 MEDFITWVDSSKIKKKIMEYNGALDDYDAM 211 +EDF+TW D+SKIK+ I +YN LDDYD + Sbjct: 154 LEDFVTWTDTSKIKRTIAKYNDKLDDYDLL 183
>IMP3_YEAST (P32899) U3 small nucleolar ribonucleoprotein protein IMP3 (U3| snoRNP protein IMP3) Length = 183 Score = 159 bits (403), Expect = 5e-39 Identities = 76/146 (52%), Positives = 105/146 (71%), Gaps = 1/146 (0%) Frame = -1 Query: 651 YSLVDRDDYKKYNGICLMSQKLVNIIKQMDPRDPFRIEMTGMLLDKLYNMGVIPTKKSLV 472 Y + +R+DY KYN IC ++L N + + P DPFR + +LLDKLY MGV+ TK + Sbjct: 36 YHIQNREDYHKYNRICGDIRRLANKLSLLPPTDPFRRKHEQLLLDKLYAMGVLTTKSKIS 95 Query: 471 KCE-RLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRVGPETVTDPAFLVTRNME 295 E +++VSA RRRL IM +LK AE +++A+ +IEQGHVRVGP + DPA+LVTRNME Sbjct: 96 DLENKVTVSAICRRRLPVIMHRLKMAETIQDAVKFIEQGHVRVGPNLINDPAYLVTRNME 155 Query: 294 DFITWVDSSKIKKKIMEYNGALDDYD 217 D++TWVD+SKIKK ++ Y +DD+D Sbjct: 156 DYVTWVDNSKIKKTLLRYRNQIDDFD 181
>YS4L_CAEEL (O01513) Putative 40S ribosomal protein S4-like| Length = 183 Score = 134 bits (337), Expect = 2e-31 Identities = 62/149 (41%), Positives = 97/149 (65%) Frame = -1 Query: 657 QRYSLVDRDDYKKYNGICLMSQKLVNIIKQMDPRDPFRIEMTGMLLDKLYNMGVIPTKKS 478 +++ + R+ Y YN + S+++ ++IK + DPFR + T +L K Y G++PT + Sbjct: 34 RKFYVKKREHYALYNTLAAKSREVADLIKNLSESDPFRSKCTEDMLTKFYAAGLVPTSDT 93 Query: 477 LVKCERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRVGPETVTDPAFLVTRNM 298 L + +++ ++FARRRL +M + E +K A +EQGHVR+G + VTDPAF+VTR+ Sbjct: 94 LERIGKVTGASFARRRLPVVMRNIGMCESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSS 153 Query: 297 EDFITWVDSSKIKKKIMEYNGALDDYDAM 211 ED ITW +SKIKK +M+YN DD+D M Sbjct: 154 EDMITWTKASKIKKHVMDYNNTRDDFDLM 182
>YS4L_PNECA (Q01688) Putative 40S ribosomal protein S4-like (Fragment)| Length = 169 Score = 129 bits (325), Expect = 6e-30 Identities = 64/135 (47%), Positives = 90/135 (66%), Gaps = 1/135 (0%) Frame = -1 Query: 657 QRYSLVDRDDYKKYNGICLMSQKLVNIIKQMDPRDPFRIEMTGMLLDKLYNMGVIPTKKS 478 +RY + R+DY KYN + + + N + ++P D F MLL KL++M ++ + Sbjct: 34 RRYHIPQREDYFKYNQLVGLLLGIANKLSLLEPTDSFGNLHKKMLLGKLFDMALLTSTPK 93 Query: 477 LVKCE-RLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRVGPETVTDPAFLVTRN 301 L E +L+VSAF RRRL +M +LK E + ++ Y+E GHVRVGPE +TDPAF VTRN Sbjct: 94 LSDVENKLTVSAFCRRRLPVVMCRLKMCETVSTSVKYVEHGHVRVGPEVITDPAFFVTRN 153 Query: 300 MEDFITWVDSSKIKK 256 MEDF+TWVDSSKI++ Sbjct: 154 MEDFVTWVDSSKIRR 168
>RS4_PICTO (Q6KZP7) 30S ribosomal protein S4P| Length = 183 Score = 60.5 bits (145), Expect = 4e-09 Identities = 31/96 (32%), Positives = 54/96 (56%) Frame = -1 Query: 555 DPFRIEMTGMLLDKLYNMGVIPTKKSLVKCERLSVSAFARRRLATIMVKLKFAEHLKEAI 376 DP I+ +L+ KL + ++ +L L++ RRL T++ K A +K+A Sbjct: 66 DPLAIKQFQLLIGKLSRLNLLGENATLDDVLSLNIEDILERRLETLVYKKNLALTMKQAR 125 Query: 375 TYIEQGHVRVGPETVTDPAFLVTRNMEDFITWVDSS 268 +I GH++V VT P+F+V ++MED IT+ ++S Sbjct: 126 QFITHGHIKVNDRVVTIPSFMVEKSMEDSITYNETS 161
>RS4_ARCFU (O28000) 30S ribosomal protein S4P| Length = 172 Score = 60.5 bits (145), Expect = 4e-09 Identities = 31/90 (34%), Positives = 51/90 (56%) Frame = -1 Query: 525 LLDKLYNMGVIPTKKSLVKCERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRV 346 ++ KL MG++P +L LSV F RRL T++ + A +K+A +I GH+ V Sbjct: 79 VIKKLNKMGILPENATLDDILNLSVEDFLERRLQTMVYRQGLARTIKQARQFITHGHIAV 138 Query: 345 GPETVTDPAFLVTRNMEDFITWVDSSKIKK 256 VT P+F+VT+ +E I++ +S + K Sbjct: 139 DGRRVTSPSFIVTKELESKISFYRNSPLAK 168
>RS4_PYRKO (Q5JJF2) 30S ribosomal protein S4P| Length = 180 Score = 57.4 bits (137), Expect = 4e-08 Identities = 31/91 (34%), Positives = 46/91 (50%) Frame = -1 Query: 525 LLDKLYNMGVIPTKKSLVKCERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRV 346 LL +LY +G++P L L+V RRL TI+ + A +K+A I GH+ V Sbjct: 73 LLQRLYRLGLLPADAVLDDVLSLTVEDVLERRLQTIVYRKGLARTMKQARQLIVHGHIEV 132 Query: 345 GPETVTDPAFLVTRNMEDFITWVDSSKIKKK 253 + + P +LV R ED IT+ S K+ Sbjct: 133 NGQVIRSPGYLVLREEEDTITYAKGSPFAKE 163
>RS4_PYRAE (Q8ZTV1) 30S ribosomal protein S4P| Length = 159 Score = 52.0 bits (123), Expect = 2e-06 Identities = 32/82 (39%), Positives = 42/82 (51%), Gaps = 1/82 (1%) Frame = -1 Query: 519 DKLYNMGVIPTKK-SLVKCERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRVG 343 +KLY MG I L + L V A RRL TI+ ++ A+ + A I GHV V Sbjct: 77 EKLYKMGFIEDPNVQLDRILSLDVRAILERRLQTIVYRMGLAKSIHHARQLIVHGHVAVA 136 Query: 342 PETVTDPAFLVTRNMEDFITWV 277 VT P FLV R +ED I+ + Sbjct: 137 GRRVTSPGFLVPRELEDKISLI 158
>RS4_SULTO (Q96YV8) 30S ribosomal protein S4P| Length = 177 Score = 52.0 bits (123), Expect = 2e-06 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 1/91 (1%) Frame = -1 Query: 525 LLDKLYNMGVIPTKKS-LVKCERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVR 349 L+ KLY MG+I + L L+ + RRL TI+ K A + +A I GH+ Sbjct: 73 LIQKLYRMGIIEKDNATLDDILGLNEENYLERRLQTIVYKKGLARTIYQARQLIVHGHIA 132 Query: 348 VGPETVTDPAFLVTRNMEDFITWVDSSKIKK 256 +G VT P ++V R ED I + +S K+ Sbjct: 133 IGGRRVTSPGYIVMRGEEDLIDFYPTSPFKQ 163
>RS9_DICDI (P14132) 40S ribosomal protein S9 (40S ribosomal protein 1024)| (Vegetative-specific protein V12) Length = 185 Score = 51.2 bits (121), Expect = 3e-06 Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 1/87 (1%) Frame = -1 Query: 567 MDPRDPFRIEMTGMLLDKLYNMGVIP-TKKSLVKCERLSVSAFARRRLATIMVKLKFAEH 391 +D +DP RI LL +L+ +GV+ +K L L V F RRL T++ K A+ Sbjct: 59 LDEKDPKRIFEGSALLRRLHKLGVMEESKNKLDYILNLKVQDFMERRLQTLVFKNGLAKS 118 Query: 390 LKEAITYIEQGHVRVGPETVTDPAFLV 310 + A I+ H+RVG + V P+FLV Sbjct: 119 IHHARVLIKGRHIRVGKQLVNVPSFLV 145
>RS9A_YEAST (O13516) 40S ribosomal protein S9-A (S13) (YS11) (RP21) (YP28)| Length = 196 Score = 50.8 bits (120), Expect = 3e-06 Identities = 34/100 (34%), Positives = 50/100 (50%), Gaps = 1/100 (1%) Frame = -1 Query: 564 DPRDPFRIEMTGMLLDKLYNMGVIPT-KKSLVKCERLSVSAFARRRLATIMVKLKFAEHL 388 D +DP R+ L+ +L +GV+ KK L L V F RRL T + KL A+ + Sbjct: 62 DEKDPKRLFEGNALIRRLVRVGVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSV 121 Query: 387 KEAITYIEQGHVRVGPETVTDPAFLVTRNMEDFITWVDSS 268 A I Q H+ VG + V P+F+V + E I + +S Sbjct: 122 HHARVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDFAPTS 161
>RS4_PYRHO (O59306) 30S ribosomal protein S4P| Length = 180 Score = 50.8 bits (120), Expect = 3e-06 Identities = 28/86 (32%), Positives = 45/86 (52%) Frame = -1 Query: 525 LLDKLYNMGVIPTKKSLVKCERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRV 346 LL +L +G++P L L+V RRL TI+ K A +++A I GH+ V Sbjct: 73 LLSRLKRLGLLPEDAVLDDVLSLTVEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEV 132 Query: 345 GPETVTDPAFLVTRNMEDFITWVDSS 268 + + P++LV + ED IT+ +S Sbjct: 133 NGQIIRSPSYLVLKEEEDKITYARTS 158
>RS4_NANEQ (Q74NF7) 30S ribosomal protein S4P| Length = 180 Score = 50.8 bits (120), Expect = 3e-06 Identities = 30/87 (34%), Positives = 46/87 (52%) Frame = -1 Query: 522 LDKLYNMGVIPTKKSLVKCERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRVG 343 L KL +GV+ L L+V RRL T++V+ A+ +K+A +I GH+ V Sbjct: 73 LTKLKKLGVLSENAELDDVLDLTVKDVLERRLQTMLVRKGLAKTMKQARQFIVHGHIMVN 132 Query: 342 PETVTDPAFLVTRNMEDFITWVDSSKI 262 E V P++LV + ED I +V S + Sbjct: 133 GEVVDAPSYLVKKEEEDKIEFVPFSPL 159
>RS9B_YEAST (P05755) 40S ribosomal protein S9-B (S13) (YS11) (RP21) (YP28)| Length = 194 Score = 50.8 bits (120), Expect = 3e-06 Identities = 34/100 (34%), Positives = 50/100 (50%), Gaps = 1/100 (1%) Frame = -1 Query: 564 DPRDPFRIEMTGMLLDKLYNMGVIPT-KKSLVKCERLSVSAFARRRLATIMVKLKFAEHL 388 D +DP R+ L+ +L +GV+ KK L L V F RRL T + KL A+ + Sbjct: 62 DEKDPKRLFEGNALIRRLVRVGVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSV 121 Query: 387 KEAITYIEQGHVRVGPETVTDPAFLVTRNMEDFITWVDSS 268 A I Q H+ VG + V P+F+V + E I + +S Sbjct: 122 HHARVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDFAPTS 161
>RS4_SULAC (P39467) 30S ribosomal protein S4P| Length = 176 Score = 50.8 bits (120), Expect = 3e-06 Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 1/91 (1%) Frame = -1 Query: 525 LLDKLYNMGVIPTKKS-LVKCERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVR 349 L+ KLY MG++ S L L+ + RRL TI+ K A + +A I GH+ Sbjct: 73 LIQKLYRMGILEKDNSTLDDILSLTEENYLERRLQTIVYKKGLARTIYQARQLITHGHIA 132 Query: 348 VGPETVTDPAFLVTRNMEDFITWVDSSKIKK 256 + VT P ++V R ED I + +S K+ Sbjct: 133 ISGRKVTSPGYVVLRGEEDLIDYYPTSPFKQ 163
>RS4_PYRFU (P61993) 30S ribosomal protein S4P| Length = 180 Score = 50.1 bits (118), Expect = 6e-06 Identities = 27/86 (31%), Positives = 45/86 (52%) Frame = -1 Query: 525 LLDKLYNMGVIPTKKSLVKCERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRV 346 LL +L +G++P L L++ RRL TI+ K A +++A I GH+ V Sbjct: 73 LLARLKRLGLLPEDAVLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEV 132 Query: 345 GPETVTDPAFLVTRNMEDFITWVDSS 268 + + P++LV + ED IT+ +S Sbjct: 133 NGQIIRSPSYLVLKEEEDTITYARTS 158
>RS4_PYRAB (P61992) 30S ribosomal protein S4P| Length = 180 Score = 50.1 bits (118), Expect = 6e-06 Identities = 27/86 (31%), Positives = 45/86 (52%) Frame = -1 Query: 525 LLDKLYNMGVIPTKKSLVKCERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRV 346 LL +L +G++P L L++ RRL TI+ K A +++A I GH+ V Sbjct: 73 LLARLKRLGLLPEDAVLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEV 132 Query: 345 GPETVTDPAFLVTRNMEDFITWVDSS 268 + + P++LV + ED IT+ +S Sbjct: 133 NGQIIRSPSYLVLKEEEDTITYARTS 158
>RS4_AERPE (Q9YB58) 30S ribosomal protein S4P| Length = 171 Score = 49.7 bits (117), Expect = 8e-06 Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 2/103 (1%) Frame = -1 Query: 546 RIEMTGMLLDKLYNMGVIPTKKSLVKCERLSVSA--FARRRLATIMVKLKFAEHLKEAIT 373 R E + +L++ LY MG+I + E L ++A RRL TI+ K A+ + +A Sbjct: 66 RREASRVLVESLYRMGLIDNPNVDID-EVLGINAEKVLERRLQTIVYKKGLAKTIYQARQ 124 Query: 372 YIEQGHVRVGPETVTDPAFLVTRNMEDFITWVDSSKIKKKIME 244 + GH+ + VT P +LV+R E I + S K++ E Sbjct: 125 LVVHGHIAIAGRRVTSPGYLVSREEEKLIDYAPGSPFKERAEE 167
>RS9_PODAN (P52810) 40S ribosomal protein S9 (S7)| Length = 190 Score = 49.7 bits (117), Expect = 8e-06 Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 1/101 (0%) Frame = -1 Query: 567 MDPRDPFRIEMTGMLLDKLYNMGVIP-TKKSLVKCERLSVSAFARRRLATIMVKLKFAEH 391 +D +DP R+ L+ +L +GV+ ++ L L F RRL T++ KL A+ Sbjct: 60 LDEKDPKRLFEGNALIRRLVRVGVLDESRMKLDYVLALKAEDFLERRLQTLVYKLGLAKS 119 Query: 390 LKEAITYIEQGHVRVGPETVTDPAFLVTRNMEDFITWVDSS 268 + A I Q H+RVG + V P+F+V + + I + +S Sbjct: 120 IHHARVLIRQRHIRVGKQIVNVPSFVVRLDSQKHIDFALTS 160
>RS9A_SCHPO (Q09757) 40S ribosomal protein S9-A| Length = 190 Score = 49.3 bits (116), Expect = 1e-05 Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 1/101 (0%) Frame = -1 Query: 567 MDPRDPFRIEMTGMLLDKLYNMGVIP-TKKSLVKCERLSVSAFARRRLATIMVKLKFAEH 391 +D +DP R+ ++ +L +G++ T+ L L + F RRL T + KL A+ Sbjct: 61 LDEKDPKRLFEGNAIIRRLVRLGILDETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKS 120 Query: 390 LKEAITYIEQGHVRVGPETVTDPAFLVTRNMEDFITWVDSS 268 + A I Q H+RVG + V P+F+V + + I + SS Sbjct: 121 IHHARVLIFQRHIRVGKQIVNVPSFVVRLDTQKHIDFALSS 161
>RS4_METTH (O26142) 30S ribosomal protein S4P| Length = 171 Score = 47.8 bits (112), Expect = 3e-05 Identities = 30/92 (32%), Positives = 45/92 (48%) Frame = -1 Query: 525 LLDKLYNMGVIPTKKSLVKCERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRV 346 LL L G++ L L+V RRRL T++ K A +KEA + GH+ + Sbjct: 73 LLGHLVRTGILNEGAKLEDVLDLTVEDVLRRRLQTLVHKRGLARTVKEARQMVIHGHIAL 132 Query: 345 GPETVTDPAFLVTRNMEDFITWVDSSKIKKKI 250 + P ++V R ED I + SS +KK+I Sbjct: 133 DGRKIDAPGYIVKRGEEDKIGFYPSSPMKKQI 164
>RS9_CAEEL (Q20228) 40S ribosomal protein S9| Length = 189 Score = 47.8 bits (112), Expect = 3e-05 Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 1/104 (0%) Frame = -1 Query: 594 QKLVNIIKQMDPRDPFRIEMTGMLLDKLYNMGVIP-TKKSLVKCERLSVSAFARRRLATI 418 +K + ++ +DP R+ LL +L +GV+ TK L L V F RRL T Sbjct: 53 RKAARELLTLEDKDPKRLFEGNALLRRLVKIGVLDETKMKLDYVLGLKVEDFLERRLQTQ 112 Query: 417 MVKLKFAEHLKEAITYIEQGHVRVGPETVTDPAFLVTRNMEDFI 286 + KL A+ + A I+Q H+RV + V P+F+V + + I Sbjct: 113 VFKLGLAKSIHHARILIKQHHIRVRRQVVDVPSFIVRLDSQKHI 156
>RS9B_SCHPO (O59675) 40S ribosomal protein S9-B| Length = 191 Score = 47.8 bits (112), Expect = 3e-05 Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 1/101 (0%) Frame = -1 Query: 567 MDPRDPFRIEMTGMLLDKLYNMGVIP-TKKSLVKCERLSVSAFARRRLATIMVKLKFAEH 391 +D +DP R+ ++ +L +G++ ++ L L + F RRL T + KL A+ Sbjct: 61 LDEKDPKRLFEGNAIIRRLVRLGILDESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKS 120 Query: 390 LKEAITYIEQGHVRVGPETVTDPAFLVTRNMEDFITWVDSS 268 + A I Q H+RVG + V P+F+V + + I + SS Sbjct: 121 IHHARVLIFQRHIRVGKQIVNVPSFVVRLDAQKHIDFALSS 161
>RS9_RAT (P29314) 40S ribosomal protein S9| Length = 193 Score = 47.4 bits (111), Expect = 4e-05 Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 1/104 (0%) Frame = -1 Query: 594 QKLVNIIKQMDPRDPFRIEMTGMLLDKLYNMGVIPT-KKSLVKCERLSVSAFARRRLATI 418 +K + +D +DP R+ LL +L +GV+ K L L + F RRL T Sbjct: 53 RKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQ 112 Query: 417 MVKLKFAEHLKEAITYIEQGHVRVGPETVTDPAFLVTRNMEDFI 286 + KL A+ + A I Q H+RV + V P+F+V + + I Sbjct: 113 VFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHI 156
>RS9_MOUSE (Q6ZWN5) 40S ribosomal protein S9| Length = 193 Score = 47.4 bits (111), Expect = 4e-05 Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 1/104 (0%) Frame = -1 Query: 594 QKLVNIIKQMDPRDPFRIEMTGMLLDKLYNMGVIPT-KKSLVKCERLSVSAFARRRLATI 418 +K + +D +DP R+ LL +L +GV+ K L L + F RRL T Sbjct: 53 RKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQ 112 Query: 417 MVKLKFAEHLKEAITYIEQGHVRVGPETVTDPAFLVTRNMEDFI 286 + KL A+ + A I Q H+RV + V P+F+V + + I Sbjct: 113 VFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHI 156
>RS9_HUMAN (P46781) 40S ribosomal protein S9| Length = 193 Score = 47.4 bits (111), Expect = 4e-05 Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 1/104 (0%) Frame = -1 Query: 594 QKLVNIIKQMDPRDPFRIEMTGMLLDKLYNMGVIPT-KKSLVKCERLSVSAFARRRLATI 418 +K + +D +DP R+ LL +L +GV+ K L L + F RRL T Sbjct: 53 RKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQ 112 Query: 417 MVKLKFAEHLKEAITYIEQGHVRVGPETVTDPAFLVTRNMEDFI 286 + KL A+ + A I Q H+RV + V P+F+V + + I Sbjct: 113 VFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHI 156
>RS4_THEVO (Q97B95) 30S ribosomal protein S4P| Length = 200 Score = 45.1 bits (105), Expect = 2e-04 Identities = 30/99 (30%), Positives = 45/99 (45%) Frame = -1 Query: 525 LLDKLYNMGVIPTKKSLVKCERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRV 346 ++ +L ++ K +L L+V RRL TI+ K A K+A I GH+ V Sbjct: 76 MIKRLSRYKILSDKATLDDVLSLTVENILDRRLQTIVFKKNLALSEKQARQLITHGHITV 135 Query: 345 GPETVTDPAFLVTRNMEDFITWVDSSKIKKKIMEYNGAL 229 VT P LV ED I + ++S I ++ AL Sbjct: 136 NGRRVTVPGMLVEAQYEDTIAYYENSPIANELHPIRQAL 174
>RS9_DROME (P55935) 40S ribosomal protein S9| Length = 195 Score = 44.3 bits (103), Expect = 3e-04 Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 1/104 (0%) Frame = -1 Query: 594 QKLVNIIKQMDPRDPFRIEMTGMLLDKLYNMGVIP-TKKSLVKCERLSVSAFARRRLATI 418 +K + +D +D R+ LL +L +GV+ ++ L L + F RRL T Sbjct: 55 RKAARELLTLDEKDEKRLFQGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQ 114 Query: 417 MVKLKFAEHLKEAITYIEQGHVRVGPETVTDPAFLVTRNMEDFI 286 + KL A+ + A I Q H+RV + V P+F+V + + I Sbjct: 115 VFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFVVRLDSQKHI 158
>RS9_NAEFO (Q25555) 40S ribosomal protein S9| Length = 186 Score = 43.5 bits (101), Expect = 6e-04 Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 2/94 (2%) Frame = -1 Query: 561 PRDPFRIEMTGM-LLDKLYNMGVIP-TKKSLVKCERLSVSAFARRRLATIMVKLKFAEHL 388 P D + + G LL ++ +G++ +K+ L L RRL T++ KL ++ + Sbjct: 65 PEDDMKRQFEGAALLRRMTRLGLLDESKQQLDYILSLKTEDLLERRLQTVVQKLGLSKSI 124 Query: 387 KEAITYIEQGHVRVGPETVTDPAFLVTRNMEDFI 286 A I Q H+RVG +TV P+F+V + E I Sbjct: 125 HHARQLIFQRHIRVGKQTVNVPSFIVRVDSEKHI 158
>RS4_METMP (Q6LXN0) 30S ribosomal protein S4P| Length = 178 Score = 42.4 bits (98), Expect = 0.001 Identities = 22/64 (34%), Positives = 37/64 (57%) Frame = -1 Query: 459 LSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRVGPETVTDPAFLVTRNMEDFITW 280 L++ + RRL TI+ + A+ K+A +I GH+ V + VT PA+L++ D I + Sbjct: 96 LNIESILERRLQTIVFRKGLAKTPKQARQFIVHGHIAVNGKRVTAPAYLISVAENDAIEY 155 Query: 279 VDSS 268 V +S Sbjct: 156 VSNS 159
>RS4_METAC (Q8TRR1) 30S ribosomal protein S4P| Length = 218 Score = 41.6 bits (96), Expect = 0.002 Identities = 24/91 (26%), Positives = 43/91 (47%) Frame = -1 Query: 525 LLDKLYNMGVIPTKKSLVKCERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRV 346 +L KL G+I + ++ L RRL T +++L A + +A +I GH+ + Sbjct: 81 ILSKLIRYGIIKSDANIDDILSLKTENILERRLQTQVLRLGLARTVIQARQFITHGHIAI 140 Query: 345 GPETVTDPAFLVTRNMEDFITWVDSSKIKKK 253 T P LV++ E I + +S +K + Sbjct: 141 NGRKATIPGMLVSKEDEMHIGYYGNSPLKNE 171
>RS4_HALSA (Q9HQJ6) 30S ribosomal protein S4P| Length = 170 Score = 40.8 bits (94), Expect = 0.004 Identities = 21/89 (23%), Positives = 47/89 (52%) Frame = -1 Query: 516 KLYNMGVIPTKKSLVKCERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRVGPE 337 +L +G++ ++ L L V+ RRL T++ + A + +A ++ GHV V Sbjct: 73 RLQRIGILSEEERLDDVLSLEVTDVLERRLQTVVYREGLANTMGQARQFVSHGHVTVDGS 132 Query: 336 TVTDPAFLVTRNMEDFITWVDSSKIKKKI 250 VT+P++ V + E+ + + ++S + ++ Sbjct: 133 RVTEPSYTVPVSEENTLAFDETSDLTDEL 161
>RS4_SULSO (P95987) 30S ribosomal protein S4P| Length = 181 Score = 40.8 bits (94), Expect = 0.004 Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 1/92 (1%) Frame = -1 Query: 525 LLDKLYNMGVIPTKKSLVK-CERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVR 349 L+ KL MG++ + + V L+ RRL TI+ K + + +A I GH+ Sbjct: 73 LVGKLLKMGLLKKETATVDDILSLTEQDLLERRLQTIVYKKGLSNTIYQARQLITHGHIA 132 Query: 348 VGPETVTDPAFLVTRNMEDFITWVDSSKIKKK 253 V + VT P ++V + E+ I + +S K + Sbjct: 133 VNGKRVTSPGYIVNVDEENLIDYYVTSSFKSR 164
>RS9_TRYBB (P17959) Probable 40S ribosomal protein S9| Length = 190 Score = 40.4 bits (93), Expect = 0.005 Identities = 29/130 (22%), Positives = 58/130 (44%), Gaps = 1/130 (0%) Frame = -1 Query: 654 RYSLVDRDDYKKYNGICLMSQKLVNIIKQMDPRDPFRIEMTGMLLDKLYNMGVIPTKKS- 478 +Y L + + + N ++ ++ + P R+ ++ + + G + K Sbjct: 32 QYGLRCKREIWRVNMTLSKMRRTARLLLTLPENHPRRLLEGSAIMRRCHGYGFLDEDKDK 91 Query: 477 LVKCERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRVGPETVTDPAFLVTRNM 298 L L+V RRL T++ K A+ + + I+Q H+ V + VT P+F+V + Sbjct: 92 LDYVLSLTVPDILERRLQTVVFKHGLAKSVHHSRVLIQQRHIAVAKQIVTIPSFIVRVSS 151 Query: 297 EDFITWVDSS 268 E I + D+S Sbjct: 152 EHHIAFADAS 161
>RS4_THEAC (Q9HJD7) 30S ribosomal protein S4P| Length = 199 Score = 40.0 bits (92), Expect = 0.006 Identities = 24/77 (31%), Positives = 37/77 (48%) Frame = -1 Query: 459 LSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRVGPETVTDPAFLVTRNMEDFITW 280 L+V RRL TI+ + A +++A I GH+ V VT P LV ED I + Sbjct: 98 LTVENILDRRLQTIVFRKNLAISVRQARQLITHGHISVAGRRVTVPGMLVEAKDEDTIAY 157 Query: 279 VDSSKIKKKIMEYNGAL 229 ++S + ++ AL Sbjct: 158 EENSPVANELHPIRQAL 174
>RS9_ENTHI (O15612) 40S ribosomal protein S9 (Fragment)| Length = 144 Score = 40.0 bits (92), Expect = 0.006 Identities = 24/116 (20%), Positives = 57/116 (49%), Gaps = 1/116 (0%) Frame = -1 Query: 654 RYSLVDRDDYKKYNGICLMSQKLVNIIKQMDPRDPFRIEMTGMLLDKLYNMGVIPTKKSL 475 ++ L ++ + ++ + + + + ++ D +DP R+ LL +L+N+G++P ++ Sbjct: 29 QFGLKNKKEIQRVHYMLGHMRTIAKVMLMKDAKDPKRLLEGAALLRRLHNLGILPRDQNK 88 Query: 474 VK-CERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRVGPETVTDPAFLV 310 ++ L RRL T++ + F + + A I ++ G + P+FLV Sbjct: 89 LEFVLALKEENLLERRLQTLVYRKGFGKSIHHARVLIRGKMIKAGKQVGGVPSFLV 144
>RS4_METMA (Q8PV18) 30S ribosomal protein S4P| Length = 219 Score = 39.7 bits (91), Expect = 0.008 Identities = 24/88 (27%), Positives = 40/88 (45%) Frame = -1 Query: 525 LLDKLYNMGVIPTKKSLVKCERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRV 346 +L KL G+I ++ L RRL T +++L A + +A +I GH+ + Sbjct: 82 ILSKLIRYGIIKADANVDDILSLKTENILERRLQTQVLRLGLARTVIQARQFITHGHIAI 141 Query: 345 GPETVTDPAFLVTRNMEDFITWVDSSKI 262 T P LV++ E I + SS + Sbjct: 142 NGRKATIPGMLVSKEDEMHIGYYGSSPL 169
>RS4_METJA (P54020) 30S ribosomal protein S4P| Length = 187 Score = 38.9 bits (89), Expect = 0.014 Identities = 21/64 (32%), Positives = 34/64 (53%) Frame = -1 Query: 459 LSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRVGPETVTDPAFLVTRNMEDFITW 280 L+V RRL T++ + A ++A I GH+ V VT P+++VT ED I++ Sbjct: 97 LTVEDILERRLQTLVFRKGLARTPRQARQLIVHGHIAVNGRVVTAPSYMVTVEEEDKISY 156 Query: 279 VDSS 268 +S Sbjct: 157 AKNS 160
>RS4_METBF (Q46GC8) 30S ribosomal protein S4P| Length = 216 Score = 38.1 bits (87), Expect = 0.023 Identities = 23/88 (26%), Positives = 40/88 (45%) Frame = -1 Query: 525 LLDKLYNMGVIPTKKSLVKCERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRV 346 +L KL G+I + + L RRL T +++L A + +A +I GH+ + Sbjct: 81 ILAKLIRYGIIKSDADIDDILSLKTENILERRLQTQVLRLGLARTVVQARQFITHGHIAI 140 Query: 345 GPETVTDPAFLVTRNMEDFITWVDSSKI 262 T P LV++ E I + +S + Sbjct: 141 NGRKATVPGMLVSKEDEMHIGYYATSPL 168
>RS4B_CLOAB (Q97J08) Putative 30S ribosomal protein S4 B| Length = 192 Score = 35.4 bits (80), Expect = 0.15 Identities = 28/95 (29%), Positives = 46/95 (48%) Frame = -1 Query: 525 LLDKLYNMGVIPTKKSLVKCERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRV 346 +L+K + V KS K E + V + RRL ++ +L F L+EA + GH+ V Sbjct: 54 VLEKQFKKIVFNALKSKEKSEDILVQSL-ERRLDNLVYRLGFGSTLREARQMVSHGHILV 112 Query: 345 GPETVTDPAFLVTRNMEDFITWVDSSKIKKKIMEY 241 + V P++ V N+ D ++ S +KI Y Sbjct: 113 NGQKVDIPSYKV--NIGDEVSLRSKS---RKIQTY 142
>RS4_NATPD (Q3IQT8) 30S ribosomal protein S4P| Length = 174 Score = 35.0 bits (79), Expect = 0.20 Identities = 30/132 (22%), Positives = 59/132 (44%), Gaps = 1/132 (0%) Frame = -1 Query: 654 RYSLVDRDD-YKKYNGICLMSQKLVNIIKQMDPRDPFRIEMTGMLLDKLYNMGVIPTKKS 478 RY LV++++ ++ + + ++ +I + E L +L +GV+ + S Sbjct: 31 RYGLVNKEELWRAQSELRDYRREARRLIGEAQGDTVAAAEAGSEFLARLKRIGVLDDEDS 90 Query: 477 LVKCERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRVGPETVTDPAFLVTRNM 298 L L V+ RRL T+ + ++A +I GHV V V+ P++ V Sbjct: 91 LDDILSLDVTDILERRLQTVAYRKGLGNTPQQARQFIAHGHVTVNGARVSAPSYKVDVAE 150 Query: 297 EDFITWVDSSKI 262 E I + ++S + Sbjct: 151 EGEIEFDETSPL 162
>RS4_HALMA (Q00862) 30S ribosomal protein S4P (HmaS4)| Length = 171 Score = 34.7 bits (78), Expect = 0.26 Identities = 21/91 (23%), Positives = 42/91 (46%) Frame = -1 Query: 522 LDKLYNMGVIPTKKSLVKCERLSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRVG 343 L +L G++ + L L V+ RRL T++ + +A ++A +I GH+ + Sbjct: 72 LARLKRYGILNEQDQLDDVLSLDVTDVLERRLQTVVYRKGYANTPEQARQFIVHGHIVLD 131 Query: 342 PETVTDPAFLVTRNMEDFITWVDSSKIKKKI 250 VT P V +E + + + S + ++ Sbjct: 132 DARVTRPGMTVETAVESSVGFDEHSSLSDEL 162
>RS4_NITWN (Q3ST14) 30S ribosomal protein S4| Length = 205 Score = 33.5 bits (75), Expect = 0.57 Identities = 20/66 (30%), Positives = 34/66 (51%) Frame = -1 Query: 435 RRLATIMVKLKFAEHLKEAITYIEQGHVRVGPETVTDPAFLVTRNMEDFITWVDSSKIKK 256 RRL T++ + KF + A +I GHV+V V P++ + + D + D+SK Sbjct: 94 RRLDTVVYRAKFVPTIFAARQFINHGHVKVNGRRVNIPSYKL--KVGDTVEVKDASKQLA 151 Query: 255 KIMEYN 238 ++E N Sbjct: 152 LVLEAN 157
>RS4_GLUOX (Q5FQ27) 30S ribosomal protein S4| Length = 205 Score = 33.1 bits (74), Expect = 0.75 Identities = 22/57 (38%), Positives = 30/57 (52%) Frame = -1 Query: 435 RRLATIMVKLKFAEHLKEAITYIEQGHVRVGPETVTDPAFLVTRNMEDFITWVDSSK 265 RRL ++ +LKFA + +I GHV V + V P++LV D I DSSK Sbjct: 94 RRLDAVVYRLKFAITPFASRQFISHGHVTVNGKKVNIPSYLVKEG--DVIEVRDSSK 148
>RS4_FUSNN (Q8RE43) 30S ribosomal protein S4| Length = 195 Score = 32.3 bits (72), Expect = 1.3 Identities = 17/65 (26%), Positives = 35/65 (53%) Frame = -1 Query: 459 LSVSAFARRRLATIMVKLKFAEHLKEAITYIEQGHVRVGPETVTDPAFLVTRNMEDFITW 280 L++ + RRL ++ +L FA+ ++A + GH+ V V +F V + D ++ Sbjct: 80 LTLIEYLERRLENVVYRLGFAKTRRQARQIVSHGHIAVNGRRVNIASFRV--KVGDIVSV 137 Query: 279 VDSSK 265 +++SK Sbjct: 138 IENSK 142
>RS4_PELCD (Q3A6M1) 30S ribosomal protein S4| Length = 209 Score = 32.0 bits (71), Expect = 1.7 Identities = 30/111 (27%), Positives = 48/111 (43%) Frame = -1 Query: 558 RDPFRIEMTGMLLDKLYNMGVIPTKKSLVKCERLSVSAFARRRLATIMVKLKFAEHLKEA 379 R+ R++ T LL+K + S+ ++ RRL + + +L FA E Sbjct: 58 REKQRMKRTYGLLEKQFR-AYFDKADSMKGVTGENLLVLLERRLDSAVYRLGFASSRTEG 116 Query: 378 ITYIEQGHVRVGPETVTDPAFLVTRNMEDFITWVDSSKIKKKIMEYNGALD 226 + QGH V V P++++ N D I + S +KI N ALD Sbjct: 117 RALVRQGHFLVNGRKVNIPSYVMRPN--DVIELREKS---RKITRINDALD 162
>RS4_AQUAE (O66484) 30S ribosomal protein S4| Length = 211 Score = 31.6 bits (70), Expect = 2.2 Identities = 15/45 (33%), Positives = 25/45 (55%) Frame = -1 Query: 444 FARRRLATIMVKLKFAEHLKEAITYIEQGHVRVGPETVTDPAFLV 310 + RRL ++ +L FA ++A + GHV V + V P++LV Sbjct: 95 YLERRLDNVVYRLGFASTRRQARQLVAHGHVLVNGKKVNIPSYLV 139
>RS4_THEFY (Q47R66) 30S ribosomal protein S4| Length = 203 Score = 31.2 bits (69), Expect = 2.8 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 11/75 (14%) Frame = -1 Query: 432 RLATIMVKLKFAEHLKEAITYIEQGHVRVGPETVTDPAFLV-----------TRNMEDFI 286 RLAT++++ FA + A +I GH+ V + V P++ V +R + FI Sbjct: 93 RLATVLLRAGFAASIYAARQFINHGHITVDGKKVDIPSYQVKPGQIVSVREKSRKLVPFI 152 Query: 285 TWVDSSKIKKKIMEY 241 + +KI Y Sbjct: 153 EAAEGVHADEKIASY 167
>MURE_PSEAE (Q59650) UDP-N-acetylmuramoylalanyl-D-glutamate--2,| 6-diaminopimelate ligase (EC 6.3.2.13) (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) Length = 487 Score = 30.8 bits (68), Expect = 3.7 Identities = 12/27 (44%), Positives = 19/27 (70%) Frame = +1 Query: 238 IILHDLFLDLRGIHPGDEVLHVPGHKE 318 +++ +L LD RG+ PGD L VPG ++ Sbjct: 16 LLIRELTLDSRGVRPGDLFLAVPGGRQ 42
>RS4_RHOPA (Q6N9G0) 30S ribosomal protein S4 (RRP-S4)| Length = 204 Score = 30.4 bits (67), Expect = 4.9 Identities = 18/64 (28%), Positives = 33/64 (51%) Frame = -1 Query: 435 RRLATIMVKLKFAEHLKEAITYIEQGHVRVGPETVTDPAFLVTRNMEDFITWVDSSKIKK 256 RRL ++ + KF + A +I GH++V + V P++ V + D I ++SK Sbjct: 93 RRLDAVVYRAKFVSTMFAARQFINHGHIKVNGKRVNIPSYKV--RVGDVIEVKEASKQLA 150 Query: 255 KIME 244 ++E Sbjct: 151 FVLE 154
>RS4_PELUB (Q4FLJ0) 30S ribosomal protein S4| Length = 205 Score = 30.0 bits (66), Expect = 6.3 Identities = 19/57 (33%), Positives = 30/57 (52%) Frame = -1 Query: 435 RRLATIMVKLKFAEHLKEAITYIEQGHVRVGPETVTDPAFLVTRNMEDFITWVDSSK 265 RRL +++ + +F+ + A I GHVRV + V +++V ED I D SK Sbjct: 94 RRLDSVVYRARFSTTVFSARQLINHGHVRVNGKKVNIGSYVVKE--EDIIEIRDKSK 148
>RS9_PIG (Q29197) 40S ribosomal protein S9 (Fragment)| Length = 130 Score = 30.0 bits (66), Expect = 6.3 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 1/79 (1%) Frame = -1 Query: 594 QKLVNIIKQMDPRDPFRIEMTGMLLDKLYNMGVIPT-KKSLVKCERLSVSAFARRRLATI 418 +K + +D +DP R+ LL +L +GV+ K L L + F RRL T Sbjct: 52 RKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQ 111 Query: 417 MVKLKFAEHLKEAITYIEQ 361 + KL A + I Q Sbjct: 112 VFKLGLAXSIHHXRVLIRQ 130
>RS4_THETN (Q8R7Y1) 30S ribosomal protein S4| Length = 206 Score = 30.0 bits (66), Expect = 6.3 Identities = 18/57 (31%), Positives = 30/57 (52%) Frame = -1 Query: 435 RRLATIMVKLKFAEHLKEAITYIEQGHVRVGPETVTDPAFLVTRNMEDFITWVDSSK 265 RRL ++ +L FA +A + GH+ V + V P++LV D I+ +SS+ Sbjct: 98 RRLDNVVYRLGFAVSRAQARQLVSHGHIEVNGKKVDIPSYLVKPG--DVISVKESSR 152
>RS4_CLOTE (Q890Q9) 30S ribosomal protein S4| Length = 206 Score = 30.0 bits (66), Expect = 6.3 Identities = 18/64 (28%), Positives = 32/64 (50%) Frame = -1 Query: 432 RLATIMVKLKFAEHLKEAITYIEQGHVRVGPETVTDPAFLVTRNMEDFITWVDSSKIKKK 253 RL ++ +L + + KE+ + GH V + V P+F V+ N D IT + S+ +K Sbjct: 99 RLDNVVYRLGYGDSRKESRQLVTHGHFLVNGKKVNIPSFNVSVN--DVITVSEKSRATEK 156 Query: 252 IMEY 241 + Sbjct: 157 FKTF 160
>RS4_MYCPU (Q98PK6) 30S ribosomal protein S4| Length = 199 Score = 29.6 bits (65), Expect = 8.3 Identities = 14/45 (31%), Positives = 25/45 (55%) Frame = -1 Query: 444 FARRRLATIMVKLKFAEHLKEAITYIEQGHVRVGPETVTDPAFLV 310 F +RL ++ + FAE ++A ++ GHV V + V P++ V Sbjct: 91 FLEQRLDNLVYRAGFAETRRQARQFVNHGHVLVDGKKVDIPSYRV 135
>VATD_METTH (O27034) V-type ATP synthase subunit D (EC 3.6.3.14) (V-type ATPase| subunit D) Length = 213 Score = 29.6 bits (65), Expect = 8.3 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 17/86 (19%) Frame = -1 Query: 501 GVIPTKKSLVKC---ERLSVSAFA---RRRLATIMV-----------KLKFAEHLKEAIT 373 G+ PT+ L+K E+L+V ++ +R A IM + K EHLKEA + Sbjct: 8 GINPTRMELLKLKQREKLAVKGYSLLKEKRNALIMEFFNILERVKGSREKVEEHLKEAFS 67 Query: 372 YIEQGHVRVGPETVTDPAFLVTRNME 295 + + V +G V A V ++E Sbjct: 68 DLTEAQVLMGDTAVERAAMSVRESVE 93
>RSMB_VIBCH (Q9KVU5) Ribosomal RNA small subunit methyltransferase B (EC| 2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase) (16S rRNA m5C967 methyltransferase) Length = 434 Score = 29.6 bits (65), Expect = 8.3 Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 2/96 (2%) Frame = +1 Query: 172 WSRNFYYHDTSSNHGIIIIQCTIIL--HDLFLDLRGIHPGDEVLHVPGHKEGWIGDRLWA 345 W R + H T + + ++ Q I+ H D + +V +PG EGW+ + A Sbjct: 180 WLRVNHQHHTRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQD-A 238 Query: 346 YTHMSLFNVGDSLFKVFSKLELHHNCCKSPPGESAH 453 ++L + EL +CC +P G++AH Sbjct: 239 AAQLALTYLAPQAG------ELILDCCAAPGGKTAH 268
>Y396_MYCLE (Q57240) Hypothetical protein ML0396/ML2692| Length = 369 Score = 29.6 bits (65), Expect = 8.3 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%) Frame = +1 Query: 295 LHV-PGHKEGWIGDRLWAYTHMSLFNVGDSLFKVFSKLEL 411 +H+ P GW+ DR WAY + GD + KLE+ Sbjct: 269 IHIGPSDHVGWLDDRKWAYVRLEGRGFGDVPLNLEYKLEV 308 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 87,831,409 Number of Sequences: 219361 Number of extensions: 1721899 Number of successful extensions: 5224 Number of sequences better than 10.0: 61 Number of HSP's better than 10.0 without gapping: 5006 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5205 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6257125380 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
