ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal5h02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DEFA_AEDAE (P91793) Defensin-A precursor (AaDef) 32 0.52
2PARP1_HUMAN (P09874) Poly [ADP-ribose] polymerase 1 (EC 2.4.2.30... 31 0.89
3GP125_HUMAN (Q8IWK6) Probable G-protein coupled receptor 125 pre... 30 1.5
4CLCNX_USTMA (P0C197) Probable chloride channel protein UM03490-D 30 1.5
5GLB1_CHLEU (Q08753) Globin LI637 29 3.4
6NOL3_RAT (Q62881) Nucleolar protein 3 28 4.4
7CYPC_STRHA (Q05368) Putative polyketide cyclase (Fragment) 28 7.5
8GAP2_DROME (Q8T498) Probable Ras GTPase-activating protein 28 7.5
9SFR16_HUMAN (Q8N2M8) Splicing factor, arginine/serine-rich 16 (S... 27 9.8
10SFR16_MOUSE (Q8CFC7) Splicing factor, arginine/serine-rich 16 (S... 27 9.8

>DEFA_AEDAE (P91793) Defensin-A precursor (AaDef)|
          Length = 98

 Score = 31.6 bits (70), Expect = 0.52
 Identities = 19/54 (35%), Positives = 24/54 (44%)
 Frame = +3

Query: 30  AAVSCQPQHPCLKPGARRFALGLVALLPQFLVSRRVSLYLAEKKLCHLPSAFGL 191
           A  S  PQ P L   AR FA  L   LP+      V  +  ++  C L S FG+
Sbjct: 16  AITSAYPQEPVLADEARPFANSLFDELPEETYQAAVENFRLKRATCDLLSGFGV 69



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>PARP1_HUMAN (P09874) Poly [ADP-ribose] polymerase 1 (EC 2.4.2.30) (PARP-1)|
           (ADPRT) (NAD(+) ADP-ribosyltransferase 1)
           (Poly[ADP-ribose] synthetase 1)
          Length = 1013

 Score = 30.8 bits (68), Expect = 0.89
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -3

Query: 153 QQDIVKPSDSQGTVAATPPAPERSAEPQVSNKDAAVDR 40
           +QD + P ++  +VAATPP P  ++ P   N  A+ D+
Sbjct: 351 KQDRIFPPETSASVAATPP-PSTASAPAAVNSSASADK 387



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>GP125_HUMAN (Q8IWK6) Probable G-protein coupled receptor 125 precursor|
          Length = 1321

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -3

Query: 171  GDRASSQQDIVKPSDSQGTVAATPPAPERSAEPQVSNKDAA 49
            G  + S Q  V+P +S GT    P  P  SAE   +NK A+
Sbjct: 1064 GRSSYSVQVNVQPPNSNGTNGEAPKCPNSSAESSCTNKSAS 1104



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>CLCNX_USTMA (P0C197) Probable chloride channel protein UM03490-D|
          Length = 1131

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +3

Query: 24  WSAAVSCQPQHPCLKPGARRFALGLVALL 110
           WS   +CQP  PC+ PG   F LG  A L
Sbjct: 633 WSLFSACQPDVPCITPGTYAF-LGAAAAL 660



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>GLB1_CHLEU (Q08753) Globin LI637|
          Length = 164

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
 Frame = -3

Query: 156 SQQDIVKPSDSQGTVAATPPAPERSAEPQVSNK-------DAAVDR 40
           +QQ  V+PS S    AAT PAP R     +  K       +AAVD+
Sbjct: 16  AQQQPVRPSTSATAAAATAPAPARKCPSSLFAKLGGREAVEAAVDK 61



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>NOL3_RAT (Q62881) Nucleolar protein 3|
          Length = 221

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 165 RASSQQDIVKPSDSQGTVAATPPAPERSAE 76
           RAS +++I  P DS+     TP  PE  AE
Sbjct: 129 RASEEEEIGGPEDSEAVQPRTPEEPELEAE 158



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>CYPC_STRHA (Q05368) Putative polyketide cyclase (Fragment)|
          Length = 109

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
 Frame = -2

Query: 259 ER*PRVPGEKAS*EREEKDGERV------SPKAEGR*QSFFSARYSETLRLTRNCGSNAT 98
           E  PR+  E AS E  E++G+RV       P  EGR  S+ S R ++   LT       T
Sbjct: 26  ENWPRLFSEYASAEILEREGDRVRFRLTMHPDDEGRVWSWVSERVADRASLTVRAHRVET 85

Query: 97  SP 92
            P
Sbjct: 86  GP 87



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>GAP2_DROME (Q8T498) Probable Ras GTPase-activating protein|
          Length = 1556

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 137 NPPTHKELWQQRHQPQSEAPSPRFQTRMLRLTGHRRRP 24
           N PT   L QQ+ Q Q +    + Q + L+  GH+++P
Sbjct: 826 NDPTVNGLLQQQQQQQQQQQQQQQQHQQLQQHGHQQQP 863



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>SFR16_HUMAN (Q8N2M8) Splicing factor, arginine/serine-rich 16 (Suppressor of|
           white-apricot homolog 2)
          Length = 659

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -1

Query: 122 KELWQQRHQPQSEAPSPRFQTRMLRLTGHRRRPRK*RSNS 3
           +E W++++  QS +PSPR+       +  RRR R  RS S
Sbjct: 619 REEWERQYSRQSRSPSPRYSR---EYSSSRRRSRS-RSRS 654



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>SFR16_MOUSE (Q8CFC7) Splicing factor, arginine/serine-rich 16 (Suppressor of|
           white-apricot homolog 2) (Clk4-associating SR-related
           protein)
          Length = 653

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -1

Query: 122 KELWQQRHQPQSEAPSPRFQTRMLRLTGHRRRPRK*RSNS 3
           +E W++++  QS +PSPR+       +  RRR R  RS S
Sbjct: 613 REEWERQYSRQSRSPSPRYSR---EYSSSRRRSRS-RSRS 648


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,307,647
Number of Sequences: 219361
Number of extensions: 560532
Number of successful extensions: 2358
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2358
length of database: 80,573,946
effective HSP length: 84
effective length of database: 62,147,622
effective search space used: 1491542928
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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