ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal5h02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC120496.2| Genomic sequence for Sorghum bicolor, clone SBBBc0267M07, complete sequence Length = 120132 Score = 103 bits (52), Expect = 3e-19 Identities = 85/96 (88%) Strand = Plus / Plus Query: 178 ctgctttcgggctaactctttctccatctttttcttctctttcttaagacgctttttcgc 237 |||||||| ||| |||||||||||||| || |||||||| |||||||| ||||||||| | Sbjct: 10145 ctgctttctggccaactctttctccattttcttcttctccttcttaagtcgctttttctc 10204 Query: 238 caggtactcggggtcatctttcttgtctcgtttttc 273 || ||||| |||||||||||||| ||||||||||| Sbjct: 10205 tagatactctgggtcatctttcttatctcgtttttc 10240
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 89.7 bits (45), Expect = 5e-15 Identities = 87/101 (86%) Strand = Plus / Minus Query: 167 tcaccttccttctgctttcgggctaactctttctccatctttttcttctctttcttaaga 226 |||||||||||||||||| | || |||||||||||| ||||||||||||||||||| Sbjct: 14492719 tcaccttccttctgctttttgcctttttctttctccatccttttcttctctttcttaagc 14492660 Query: 227 cgctttttcgccaggtactcggggtcatctttcttgtctcg 267 || |||||| |||| ||||| || ||||||||||| ||||| Sbjct: 14492659 cgttttttctccagatactcaggatcatctttcttatctcg 14492619
>dbj|AP005683.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1585_D02 Length = 103172 Score = 89.7 bits (45), Expect = 5e-15 Identities = 87/101 (86%) Strand = Plus / Minus Query: 167 tcaccttccttctgctttcgggctaactctttctccatctttttcttctctttcttaaga 226 |||||||||||||||||| | || |||||||||||| ||||||||||||||||||| Sbjct: 92284 tcaccttccttctgctttttgcctttttctttctccatccttttcttctctttcttaagc 92225 Query: 227 cgctttttcgccaggtactcggggtcatctttcttgtctcg 267 || |||||| |||| ||||| || ||||||||||| ||||| Sbjct: 92224 cgttttttctccagatactcaggatcatctttcttatctcg 92184
>dbj|AB118007.1| Oryza sativa (japonica cultivar-group) bip120 mRNA for BRI1-KD interacting protein 120, partial cds Length = 855 Score = 89.7 bits (45), Expect = 5e-15 Identities = 87/101 (86%) Strand = Plus / Minus Query: 167 tcaccttccttctgctttcgggctaactctttctccatctttttcttctctttcttaaga 226 |||||||||||||||||| | || |||||||||||| ||||||||||||||||||| Sbjct: 411 tcaccttccttctgctttttgcctttttctttctccatccttttcttctctttcttaagc 352 Query: 227 cgctttttcgccaggtactcggggtcatctttcttgtctcg 267 || |||||| |||| ||||| || ||||||||||| ||||| Sbjct: 351 cgttttttctccagatactcaggatcatctttcttatctcg 311
>dbj|AK064203.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-104-E01, full insert sequence Length = 1600 Score = 89.7 bits (45), Expect = 5e-15 Identities = 87/101 (86%) Strand = Plus / Minus Query: 167 tcaccttccttctgctttcgggctaactctttctccatctttttcttctctttcttaaga 226 |||||||||||||||||| | || |||||||||||| ||||||||||||||||||| Sbjct: 1172 tcaccttccttctgctttttgcctttttctttctccatccttttcttctctttcttaagc 1113 Query: 227 cgctttttcgccaggtactcggggtcatctttcttgtctcg 267 || |||||| |||| ||||| || ||||||||||| ||||| Sbjct: 1112 cgttttttctccagatactcaggatcatctttcttatctcg 1072
>gb|AY105668.1| Zea mays PCO066968 mRNA sequence Length = 858 Score = 67.9 bits (34), Expect = 2e-08 Identities = 72/84 (85%), Gaps = 3/84 (3%) Strand = Plus / Minus Query: 178 ctgctttcgggctaactctttctccatctttttcttctctttcttaagacgctttttcgc 237 |||||||| || |||||||||||||| ||||||||| |||||||| ||||||||| | Sbjct: 737 ctgctttcttgccaactctttctccat---tttcttctccttcttaagtcgctttttctc 681 Query: 238 caggtactcggggtcatctttctt 261 || ||||| |||||||||||||| Sbjct: 680 tagatactctgggtcatctttctt 657
>gb|AE013059.1| Thermoanaerobacter tengcongensis MB4, section 86 of 244 of the complete genome Length = 9205 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Minus Query: 196 tttctccatctttttcttctct 217 |||||||||||||||||||||| Sbjct: 1655 tttctccatctttttcttctct 1634
>emb|AJ248283.1|CNSPAX01 Pyrococcus abyssi complete genome; segment 1/6 Length = 307150 Score = 44.1 bits (22), Expect = 0.28 Identities = 28/30 (93%) Strand = Plus / Plus Query: 193 ctctttctccatctttttcttctctttctt 222 |||||||||| |||||||||||| |||||| Sbjct: 53509 ctctttctccctctttttcttctttttctt 53538
>gb|AC008629.7| Homo sapiens chromosome 5 clone CTB-161M19, complete sequence Length = 151881 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Plus Query: 144 tatcttgctgagaagaagctct 165 |||||||||||||||||||||| Sbjct: 115181 tatcttgctgagaagaagctct 115202
>gb|AC091629.1|AC091629 Mus musculus chromosome 11 map 11, 64cM, Band E1, complete sequence Length = 161334 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Plus Query: 198 tctccatctttttcttctcttt 219 |||||||||||||||||||||| Sbjct: 158486 tctccatctttttcttctcttt 158507
>gb|AC074032.24| Homo sapiens 12 BAC RP4-605O3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 40346 Score = 44.1 bits (22), Expect = 0.28 Identities = 25/26 (96%) Strand = Plus / Minus Query: 193 ctctttctccatctttttcttctctt 218 ||||||||||||||| |||||||||| Sbjct: 25506 ctctttctccatcttcttcttctctt 25481
>emb|BX005248.13| Zebrafish DNA sequence from clone CH211-155H12 in linkage group 8, complete sequence Length = 185135 Score = 44.1 bits (22), Expect = 0.28 Identities = 25/26 (96%) Strand = Plus / Minus Query: 197 ttctccatctttttcttctctttctt 222 |||||||||||||||||||| ||||| Sbjct: 176928 ttctccatctttttcttctccttctt 176903
>emb|AL596383.8| Mouse DNA sequence from clone RP23-344E9 on chromosome 11, complete sequence Length = 110676 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Minus Query: 198 tctccatctttttcttctcttt 219 |||||||||||||||||||||| Sbjct: 56961 tctccatctttttcttctcttt 56940
>ref|XM_638425.1| Dictyostelium discoideum hypothetical protein (DDB0217700), partial mRNA Length = 3873 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 202 catctttttcttctctttctt 222 ||||||||||||||||||||| Sbjct: 2041 catctttttcttctctttctt 2021
>gb|AC147079.4| Pan troglodytes BAC clone RP43-184E24 from 7, complete sequence Length = 218644 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 208 tttcttctctttcttaagacgctttttcg 236 |||||||||||||| ||||||||||||| Sbjct: 196520 tttcttctctttctgcagacgctttttcg 196548
>ref|XM_707151.1| Candida albicans SC5314 hypothetical protein (CaO19.6856), mRNA Length = 2535 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 202 catctttttcttctctttctt 222 ||||||||||||||||||||| Sbjct: 2266 catctttttcttctctttctt 2246
>ref|XM_707121.1| Candida albicans SC5314 hypothetical protein (CaO19.14146), mRNA Length = 2535 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 202 catctttttcttctctttctt 222 ||||||||||||||||||||| Sbjct: 2266 catctttttcttctctttctt 2246
>gb|AC115825.11| Mus musculus chromosome 9, clone RP23-444E13, complete sequence Length = 192100 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 203 atctttttcttctctttctta 223 ||||||||||||||||||||| Sbjct: 167766 atctttttcttctctttctta 167786
>gb|AC073316.6| Homo sapiens BAC clone RP11-191P7 from 7, complete sequence Length = 148930 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 208 tttcttctctttcttaagacgctttttcg 236 |||||||||||||| ||||||||||||| Sbjct: 26452 tttcttctctttctgcagacgctttttcg 26424
>emb|AL626763.11| Human DNA sequence from clone RP11-17H4 on chromosome 1 Contains the 3' end of the TSNAX gene for translin-associated factor X, a novel gene, the 5' end of the DISC1 gene for disrupted in schizophrenia 1 and a CpG island, complete sequence Length = 69203 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 193 ctctttctccatctttttcttctct 217 ||||||||| ||||||||||||||| Sbjct: 62696 ctctttctctatctttttcttctct 62672
>emb|AL357075.17| Human DNA sequence from clone RP11-486M3 on chromosome 6 Contains the gene for similar to maguin-2; maguin-1 (LOC154043, FLJ31349) and a novel pseudogene. Contains a CpG island, complete sequence Length = 178461 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 194 tctttctccatctttttcttctctttctt 222 |||||||| ||||||||||||||||||| Sbjct: 64501 tctttctctctctttttcttctctttctt 64473
>emb|AL157361.6| Human DNA sequence from clone RP11-132L12 on chromosome 13q21.33-22.3 Contains a signal sequence receptor, alpha (translocon-associated protein alpha) (SSR1) pseudogene, complete sequence Length = 151603 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 201 ccatctttttcttctctttct 221 ||||||||||||||||||||| Sbjct: 73661 ccatctttttcttctctttct 73641
>emb|CR382323.8| Zebrafish DNA sequence from clone DKEY-226M8 in linkage group 5, complete sequence Length = 143411 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 193 ctctttctccatctttttcttctct 217 |||||||||| |||||||||||||| Sbjct: 100137 ctctttctccctctttttcttctct 100113
>emb|BX538314.1|HSM806579 Homo sapiens genomic DNA; cDNA DKFZp686E03132 (from clone DKFZp686E03132) Length = 3770 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 194 tctttctccatctttttcttctctttctt 222 ||||||||| |||||||||||||||||| Sbjct: 590 tctttctcctcctttttcttctctttctt 562
>gb|AC157512.3| Mus musculus BAC clone RP24-399L6 from chromosome 9, complete sequence Length = 148736 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 193 ctctttctccatctttttcttctctttct 221 ||||||||||||| || |||||||||||| Sbjct: 95784 ctctttctccatccttctcttctctttct 95812
>dbj|AK027364.1| Homo sapiens cDNA FLJ14458 fis, clone HEMBB1002247 Length = 2708 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 194 tctttctccatctttttcttctctttctt 222 |||||||| ||||||||||||||||||| Sbjct: 1880 tctttctctctctttttcttctctttctt 1908
>gb|AC093221.3| Homo sapiens chromosome 5 clone CTD-2181C22, complete sequence Length = 139833 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 195 ctttctccatctttttcttct 215 ||||||||||||||||||||| Sbjct: 133066 ctttctccatctttttcttct 133086
>gb|AC021106.6| Homo sapiens BAC clone RP11-177C12 from 4, complete sequence Length = 195108 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 194 tctttctccatctttttcttctctttctt 222 ||||||||| |||||||||||||||||| Sbjct: 96146 tctttctcctcctttttcttctctttctt 96118
>gb|AC068781.19| Homo sapiens 3 BAC RP11-457K10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 197893 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 204 tctttttcttctctttcttaa 224 ||||||||||||||||||||| Sbjct: 181079 tctttttcttctctttcttaa 181099
>gb|AC003099.1| Homo sapiens chromosome 4, BAC clone B284B3, complete sequence Length = 95129 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 194 tctttctccatctttttcttctctttctt 222 ||||||| | ||||||||||||||||||| Sbjct: 65427 tctttcttcttctttttcttctctttctt 65399
>gb|AC146149.2| Pan troglodytes BAC clone RP43-37G13 from chromosome 7, complete sequence Length = 197136 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 208 tttcttctctttcttaagacgctttttcg 236 |||||||||||||| ||||||||||||| Sbjct: 157018 tttcttctctttctgcagacgctttttcg 157046
>gb|AC115598.2| Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence Length = 154071 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 202 catctttttcttctctttctt 222 ||||||||||||||||||||| Sbjct: 126570 catctttttcttctctttctt 126550
>gb|AC154302.1| Mus musculus BAC clone RP23-378K2 from chromosome 9, complete sequence Length = 167400 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 203 atctttttcttctctttctta 223 ||||||||||||||||||||| Sbjct: 11435 atctttttcttctctttctta 11455
>dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete genome Length = 2593857 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 195 ctttctccatctttttcttct 215 ||||||||||||||||||||| Sbjct: 2267883 ctttctccatctttttcttct 2267863
>gb|AC115959.17| Mus musculus chromosome 1, clone RP24-65D16, complete sequence Length = 187431 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 202 catctttttcttctctttctt 222 ||||||||||||||||||||| Sbjct: 95690 catctttttcttctctttctt 95710
>gb|AC117799.9| Mus musculus chromosome 5, clone RP24-556H22, complete sequence Length = 178949 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 196 tttctccatctttttcttctctttc 220 |||||||||||||||||||| |||| Sbjct: 118984 tttctccatctttttcttctatttc 118960
>emb|AL929433.10| Mouse DNA sequence from clone RP23-193M23 on chromosome 4, complete sequence Length = 198426 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 201 ccatctttttcttctctttct 221 ||||||||||||||||||||| Sbjct: 65116 ccatctttttcttctctttct 65136
>dbj|AP001821.2| Homo sapiens genomic DNA, chromosome 4q22-q24, clone:2302A17, complete sequence Length = 108388 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 194 tctttctccatctttttcttctctttctt 222 ||||||| | ||||||||||||||||||| Sbjct: 22978 tctttcttcttctttttcttctctttctt 23006
>ref|NM_111378.2| Arabidopsis thaliana DNA binding AT3G05060 mRNA, complete cds Length = 2002 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 tctttttcttctctttctta 223 |||||||||||||||||||| Sbjct: 1681 tctttttcttctctttctta 1662
>gb|AC164531.9| Mus musculus chromosome 8, clone RP24-238M4, complete sequence Length = 163075 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 ctctttctccatctttttct 212 |||||||||||||||||||| Sbjct: 107393 ctctttctccatctttttct 107374
>gb|AC006729.1| Caenorhabditis elegans cosmid Y24D9A, complete sequence Length = 41172 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 193 ctctttctccatctttttcttctc 216 ||||||||||||||| |||||||| Sbjct: 21886 ctctttctccatcttcttcttctc 21909
>gb|U80450.1| Caenorhabditis elegans cosmid M01E11, complete sequence Length = 33183 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 202 catctttttcttctctttct 221 |||||||||||||||||||| Sbjct: 24143 catctttttcttctctttct 24162
>gb|AC162522.6| Mus musculus chromosome 8, clone RP23-314A15, complete sequence Length = 187888 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 ctctttctccatctttttct 212 |||||||||||||||||||| Sbjct: 4654 ctctttctccatctttttct 4635
>gb|AC146098.3| Pan troglodytes BAC clone RP43-51J12 from 7, complete sequence Length = 195811 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 192 actctttctccatctttttcttct 215 ||||||||||||||||||| |||| Sbjct: 140476 actctttctccatctttttgttct 140453
>gb|AC121276.9| Mus musculus chromosome 1, clone RP24-249B16, complete sequence Length = 212083 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 agctctgtcaccttccttct 179 |||||||||||||||||||| Sbjct: 153329 agctctgtcaccttccttct 153348
>gb|AC158932.5| Mus musculus chromosome 3, clone RP24-338G13, complete sequence Length = 159429 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 193 ctctttctccatctttttcttctc 216 |||||||||| ||||||||||||| Sbjct: 79238 ctctttctccctctttttcttctc 79215
>gb|AC162894.4| Mus musculus chromosome 3, clone RP23-326A24, complete sequence Length = 187598 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 193 ctctttctccatctttttcttctc 216 |||||||||| ||||||||||||| Sbjct: 120853 ctctttctccctctttttcttctc 120830
>gb|AC153504.6| Mus musculus 10 BAC RP23-324E2 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 200051 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 ctgtcaccttccttctgctt 183 |||||||||||||||||||| Sbjct: 13821 ctgtcaccttccttctgctt 13840
>gb|AC009177.7|ATAC009177 Arabidopsis thaliana chromosome III BAC T12H1 genomic sequence, complete sequence Length = 140064 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 tctttttcttctctttctta 223 |||||||||||||||||||| Sbjct: 9189 tctttttcttctctttctta 9208
>gb|AE014075.1| Escherichia coli CFT073, complete genome Length = 5231428 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 98 ggtggcgttgctgccacagttcct 121 ||||||||||||| |||||||||| Sbjct: 5103431 ggtggcgttgctggcacagttcct 5103408
>gb|CP000243.1| Escherichia coli UTI89, complete genome Length = 5065741 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 98 ggtggcgttgctgccacagttcct 121 ||||||||||||| |||||||||| Sbjct: 4766201 ggtggcgttgctggcacagttcct 4766178
>emb|AL603650.10| Human DNA sequence from clone RP11-263F14 on chromosome 9 Contains the 3'end of COL5A1 for collagen (type V) alpha 1,a pseudogene similar to part of a ficolin family protein and the FCN2 gene for ficolin (collagen/fibrinogen domain containing lectin) 2 (hucolin), complete sequence Length = 131466 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 gcttcgctctggggctggtg 101 |||||||||||||||||||| Sbjct: 29912 gcttcgctctggggctggtg 29931
>ref|XM_783256.1| PREDICTED: Strongylocentrotus purpuratus similar to CG31605-PA, isoform A (LOC583343), mRNA Length = 2607 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 atctttttcttctctttctt 222 |||||||||||||||||||| Sbjct: 842 atctttttcttctctttctt 823
>emb|AL133479.11| Human DNA sequence from clone RP11-299F23 on chromosome 9p23-24.3, complete sequence Length = 167497 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 tcttgctgagaagaagctct 165 |||||||||||||||||||| Sbjct: 35701 tcttgctgagaagaagctct 35682
>emb|BX908767.8| Zebrafish DNA sequence from clone DKEY-66B12 in linkage group 3, complete sequence Length = 177868 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 199 ctccatctttttcttctctttctt 222 |||||||||||||||||| ||||| Sbjct: 66748 ctccatctttttcttctccttctt 66771
>emb|BX323864.8| Zebrafish DNA sequence from clone CH211-218K4 in linkage group 17, complete sequence Length = 154824 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 tctttctccatctttttctt 213 |||||||||||||||||||| Sbjct: 73357 tctttctccatctttttctt 73376
>emb|AL596256.14| Mouse DNA sequence from clone RP23-259D24 on chromosome 11, complete sequence Length = 169405 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 ctctttctccatctttttct 212 |||||||||||||||||||| Sbjct: 128915 ctctttctccatctttttct 128896
>gb|AC008679.5| Homo sapiens chromosome 5 clone CTB-53D8, complete sequence Length = 232613 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 ctttttcttctctttcttaa 224 |||||||||||||||||||| Sbjct: 159940 ctttttcttctctttcttaa 159959
>gb|AC090577.4| Homo sapiens chromosome 8, clone RP11-575N24, complete sequence Length = 162391 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 198 tctccatctttttcttctctttct 221 ||||||| |||||||||||||||| Sbjct: 107847 tctccatatttttcttctctttct 107824
>emb|BX511254.6| Zebrafish DNA sequence from clone DKEYP-90G2 in linkage group 17, complete sequence Length = 185139 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 tctttctccatctttttctt 213 |||||||||||||||||||| Sbjct: 66000 tctttctccatctttttctt 66019
>gb|AC090431.9| Mus Musculus Strain C57BL6/J chromosome 14 RP23-324C9, complete sequence Length = 227949 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 atctttttcttctctttctt 222 |||||||||||||||||||| Sbjct: 72073 atctttttcttctctttctt 72054
>gb|AC006959.1| Homo sapiens chromosome 5, RP1-117N3 (LBNL h74), complete sequence Length = 100987 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 ctttttcttctctttcttaa 224 |||||||||||||||||||| Sbjct: 3644 ctttttcttctctttcttaa 3663
>gb|AC024225.37| Homo sapiens 12 BAC RP11-16A24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 57209 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 atctttttcttctctttctt 222 |||||||||||||||||||| Sbjct: 11924 atctttttcttctctttctt 11943
>gb|AC011711.8| Homo sapiens chromosome 11, clone RP11-309J20, complete sequence Length = 149542 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 196 tttctccatctttttcttctcttt 219 |||||||||||||||||| ||||| Sbjct: 20337 tttctccatctttttcttttcttt 20314
>gb|AC018375.8| Homo sapiens, clone RP11-3P24, complete sequence Length = 149951 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 196 tttctccatctttttcttctcttt 219 |||||||||||||||||| ||||| Sbjct: 139079 tttctccatctttttcttttcttt 139056
>emb|BX005205.17| Zebrafish DNA sequence from clone DKEY-210P14 in linkage group 16, complete sequence Length = 164219 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 194 tctttctccatctttttcttctct 217 ||||||||||||||||||| |||| Sbjct: 16261 tctttctccatctttttctgctct 16238
>gb|AF412080.1|AF412080 Arabidopsis thaliana AT3g05060/T12H1_2 mRNA, complete cds Length = 1873 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 tctttttcttctctttctta 223 |||||||||||||||||||| Sbjct: 1673 tctttttcttctctttctta 1654
>dbj|AK220645.1| Arabidopsis thaliana mRNA for putative SAR DNA-binding protein-1, partial cds, clone: RAFL21-62-I11 Length = 373 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 tctttttcttctctttctta 223 |||||||||||||||||||| Sbjct: 252 tctttttcttctctttctta 233
>ref|NM_068155.1| Caenorhabditis elegans Y24D9A.5 (Y24D9A.5) mRNA, complete cds Length = 849 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 193 ctctttctccatctttttcttctc 216 ||||||||||||||| |||||||| Sbjct: 831 ctctttctccatcttcttcttctc 808
>gb|AC009077.7|AC009077 Homo sapiens chromosome 16 clone RP11-331B16, complete sequence Length = 185167 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 197 ttctccatctttttcttctctttc 220 ||||||| |||||||||||||||| Sbjct: 60885 ttctccaactttttcttctctttc 60862
>gb|AC160410.3| Mus musculus 10 BAC RP24-356L3 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 172562 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 ctgtcaccttccttctgctt 183 |||||||||||||||||||| Sbjct: 168415 ctgtcaccttccttctgctt 168434
>gb|AF287263.1|AF287263 Mus musculus ATP-binding cassette 1, sub-family A, member 1 (Abca1) gene, complete cds Length = 278572 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 tttctccatctttttcttct 215 |||||||||||||||||||| Sbjct: 20604 tttctccatctttttcttct 20623
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 atctttttcttctctttctt 222 |||||||||||||||||||| Sbjct: 15227537 atctttttcttctctttctt 15227556
>gb|AC037423.16|AC037423 Homo sapiens chromosome 9 clone RP11-287F15, complete sequence Length = 171029 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 tcttgctgagaagaagctct 165 |||||||||||||||||||| Sbjct: 100905 tcttgctgagaagaagctct 100886
>gb|AF302491.1|AF302491 Arabidopsis thaliana NOP58-like protein mRNA, complete cds Length = 1602 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 tctttttcttctctttctta 223 |||||||||||||||||||| Sbjct: 1588 tctttttcttctctttctta 1569
>gb|AC130462.3| Homo sapiens chromosome 16 clone CTA-67A1, complete sequence Length = 191594 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 197 ttctccatctttttcttctctttc 220 ||||||| |||||||||||||||| Sbjct: 35643 ttctccaactttttcttctctttc 35666
>emb|BX296515.11| Pig DNA sequence from clone PigE-121D21, complete sequence Length = 179691 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 cctgtcaaccgcagcatcct 59 |||||||||||||||||||| Sbjct: 8327 cctgtcaaccgcagcatcct 8308
>dbj|AP005608.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0008C07 Length = 146008 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 atctttttcttctctttctt 222 |||||||||||||||||||| Sbjct: 111312 atctttttcttctctttctt 111331
>dbj|AP005696.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0063K04 Length = 158792 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 atctttttcttctctttctt 222 |||||||||||||||||||| Sbjct: 38658 atctttttcttctctttctt 38677
>emb|BX936284.27| Zebrafish DNA sequence from clone DKEY-22A24 in linkage group 3, complete sequence Length = 224666 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 199 ctccatctttttcttctctttctt 222 |||||||||||||||||| ||||| Sbjct: 44850 ctccatctttttcttctccttctt 44827
>gb|AY106099.1| Zea mays PCO066535 mRNA sequence Length = 1500 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 tctttttcttctctttctta 223 |||||||||||||||||||| Sbjct: 1230 tctttttcttctctttctta 1211
>emb|AL355888.3|CNS05TCZ Human chromosome 14 DNA sequence BAC R-322L17 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 214852 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 194 tctttctccatctttttcttctct 217 |||||||||||||| ||||||||| Sbjct: 96615 tctttctccatcttcttcttctct 96638
>gb|AE015927.1| Clostridium tetani E88, complete genome Length = 2799251 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 taactctttctccatctttt 209 |||||||||||||||||||| Sbjct: 490743 taactctttctccatctttt 490724
>dbj|AP000857.4| Homo sapiens genomic DNA, chromosome 11q, clone:CMB9-103D18, complete sequences Length = 144484 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 tctttctccatctttttctt 213 |||||||||||||||||||| Sbjct: 49567 tctttctccatctttttctt 49586
>gb|AC160999.3| Mus musculus BAC clone RP23-58I16 from chromosome 14, complete sequence Length = 222122 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 162 ctctgtcaccttccttctgctttc 185 ||||||| |||||||||||||||| Sbjct: 193729 ctctgtccccttccttctgctttc 193706
>gb|AC171338.5| Rhesus Macaque BAC CH250-526I15 (Children's Hospital Oakland Research Institute Rhesus macaque Adult Male BAC Library) complete sequence Length = 165606 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 196 tttctccatctttttcttctcttt 219 |||||||||||||||||| ||||| Sbjct: 115559 tttctccatctttttcttttcttt 115582
>gb|AC001554.1|HSAC001554 Homo sapiens (subclone 2_b8 from PAC H74) DNA sequence, complete sequence Length = 3639 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 ctttttcttctctttcttaa 224 |||||||||||||||||||| Sbjct: 1381 ctttttcttctctttcttaa 1400
>gb|CP000034.1| Shigella dysenteriae Sd197, complete genome Length = 4369232 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 98 ggtggcgttgctgccacagttcct 121 ||||||||||||| |||||||||| Sbjct: 4012793 ggtggcgttgctggcacagttcct 4012770
>gb|AC170749.6| Mus musculus chromosome 1, clone RP23-322G4, complete sequence Length = 208713 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 agctctgtcaccttccttct 179 |||||||||||||||||||| Sbjct: 183653 agctctgtcaccttccttct 183634
>emb|AL833806.7| Mouse DNA sequence from clone RP23-425H11 on chromosome 4, complete sequence Length = 55805 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 tttctccatctttttcttct 215 |||||||||||||||||||| Sbjct: 35201 tttctccatctttttcttct 35182
>gb|CP000036.1| Shigella boydii Sb227, complete genome Length = 4519823 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 98 ggtggcgttgctgccacagttcct 121 ||||||||||||| |||||||||| Sbjct: 4235822 ggtggcgttgctggcacagttcct 4235845 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,856,054 Number of Sequences: 3902068 Number of extensions: 3856054 Number of successful extensions: 103544 Number of sequences better than 10.0: 93 Number of HSP's better than 10.0 without gapping: 93 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 103173 Number of HSP's gapped (non-prelim): 366 length of query: 326 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 304 effective length of database: 17,147,199,772 effective search space: 5212748730688 effective search space used: 5212748730688 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
