ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal5g20 |
|---|---|
| Clone Library Name | barley_pub |
>GOX1_ARATH (Q9LRS0) Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 (EC| 1.1.3.15) (Glycolate oxidase 1) (GOX 1) (Short chain alpha-hydroxy acid oxidase 1) Length = 367 Score = 68.6 bits (166), Expect = 1e-11 Identities = 35/52 (67%), Positives = 41/52 (78%) Frame = -3 Query: 570 AEGEAGVRNVLRMMREEFELTMALGGCTKLSDITREHIFTEGDRLGRPLPRM 415 AEGEAGV+ VL+M+R+EFELTMAL GC LS+ITR HI TE D R LPR+ Sbjct: 317 AEGEAGVKKVLQMLRDEFELTMALSGCRSLSEITRNHIVTEWD-TPRHLPRL 367
>GOX2_ARATH (Q9LRR9) Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 (EC| 1.1.3.15) (Glycolate oxidase 2) (GOX 2) (Short chain alpha-hydroxy acid oxidase 2) Length = 367 Score = 64.3 bits (155), Expect = 3e-10 Identities = 33/52 (63%), Positives = 39/52 (75%) Frame = -3 Query: 570 AEGEAGVRNVLRMMREEFELTMALGGCTKLSDITREHIFTEGDRLGRPLPRM 415 AEGEAGVR VL+M+R+EFELTMAL GC L +I+R HI TE D RP R+ Sbjct: 317 AEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTEWD-TPRPSARL 367
>GOX_SPIOL (P05414) Peroxisomal (S)-2-hydroxy-acid oxidase (EC 1.1.3.15)| (Glycolate oxidase) (GOX) (Short chain alpha-hydroxy acid oxidase) Length = 369 Score = 60.8 bits (146), Expect = 3e-09 Identities = 28/43 (65%), Positives = 34/43 (79%) Frame = -3 Query: 570 AEGEAGVRNVLRMMREEFELTMALGGCTKLSDITREHIFTEGD 442 AEGEAGV+ VL+MMR+EFELTMAL GC L +I+R HI + D Sbjct: 317 AEGEAGVKKVLQMMRDEFELTMALSGCRSLKEISRSHIAADWD 359
>HAOX1_MOUSE (Q9WU19) Hydroxyacid oxidase 1 (EC 1.1.3.15) (HAOX1) (Glycolate| oxidase) (GOX) Length = 370 Score = 38.1 bits (87), Expect = 0.019 Identities = 16/34 (47%), Positives = 24/34 (70%) Frame = -3 Query: 567 EGEAGVRNVLRMMREEFELTMALGGCTKLSDITR 466 +GE GV++VL +++EEF L MAL GC + I + Sbjct: 324 QGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDK 357
>HAOX1_HUMAN (Q9UJM8) Hydroxyacid oxidase 1 (EC 1.1.3.15) (HAOX1) (Glycolate| oxidase) (GOX) Length = 370 Score = 38.1 bits (87), Expect = 0.019 Identities = 16/34 (47%), Positives = 24/34 (70%) Frame = -3 Query: 567 EGEAGVRNVLRMMREEFELTMALGGCTKLSDITR 466 +GE GV++VL +++EEF L MAL GC + I + Sbjct: 324 QGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDK 357
>LLDD_PSEPK (Q88DT3) L-lactate dehydrogenase [cytochrome] (EC 1.1.2.3)| Length = 381 Score = 37.0 bits (84), Expect = 0.043 Identities = 15/39 (38%), Positives = 25/39 (64%) Frame = -3 Query: 564 GEAGVRNVLRMMREEFELTMALGGCTKLSDITREHIFTE 448 G+AGV+N+L + +E + M L G +S+ITR+ + E Sbjct: 340 GQAGVKNLLELFEKEMRVAMVLTGAKSISEITRDSLVRE 378
>HAOX2_HUMAN (Q9NYQ3) Hydroxyacid oxidase 2 (EC 1.1.3.15) (HAOX2)| ((S)-2-hydroxy-acid oxidase, peroxisomal) (Long chain alpha-hydroxy acid oxidase) (Long-chain L-2-hydroxy acid oxidase) Length = 351 Score = 35.8 bits (81), Expect = 0.096 Identities = 15/34 (44%), Positives = 23/34 (67%) Frame = -3 Query: 567 EGEAGVRNVLRMMREEFELTMALGGCTKLSDITR 466 +GE GV+ VL ++ EF +MAL GC +++I R Sbjct: 310 KGEHGVKEVLNILTNEFHTSMALTGCRSVAEINR 343
>LLDD_PSEAE (Q9HV37) L-lactate dehydrogenase [cytochrome] (EC 1.1.2.3)| Length = 381 Score = 35.4 bits (80), Expect = 0.13 Identities = 15/41 (36%), Positives = 25/41 (60%) Frame = -3 Query: 570 AEGEAGVRNVLRMMREEFELTMALGGCTKLSDITREHIFTE 448 A GEAGVRN+L ++ +E + M L G + +I+ + + E Sbjct: 338 AAGEAGVRNLLELIEKEMRVAMVLTGAKSIGEISADSLVRE 378
>LLDD_ERWCT (Q6DAY3) L-lactate dehydrogenase [cytochrome] (EC 1.1.2.3)| Length = 386 Score = 34.7 bits (78), Expect = 0.21 Identities = 15/38 (39%), Positives = 24/38 (63%) Frame = -3 Query: 570 AEGEAGVRNVLRMMREEFELTMALGGCTKLSDITREHI 457 A GEAGV N+L ++ +E + M L G ++DIT + + Sbjct: 338 AAGEAGVVNLLNLIEKEMRVAMTLTGAKSIADITSDSL 375
>HAOX2_MOUSE (Q9NYQ2) Hydroxyacid oxidase 2 (EC 1.1.3.15) (HAOX2)| ((S)-2-hydroxy-acid oxidase, peroxisomal) (Medium chain alpha-hydroxy acid oxidase) (Medium-chain L-2-hydroxy acid oxidase) Length = 353 Score = 34.7 bits (78), Expect = 0.21 Identities = 15/37 (40%), Positives = 25/37 (67%) Frame = -3 Query: 567 EGEAGVRNVLRMMREEFELTMALGGCTKLSDITREHI 457 +GE GV+ VL +++EE MAL GC +++I+ + I Sbjct: 312 KGEDGVKEVLDILKEELHTCMALSGCRSVAEISPDLI 348
>YWZ5_CAEEL (Q11095) Hypothetical protein C02B8.5| Length = 453 Score = 34.3 bits (77), Expect = 0.28 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = +1 Query: 145 NTIWCSRCEIWWKWRDVPVDKY 210 N+ WC C + W+WR +P D Y Sbjct: 412 NSEWCGLCNLCWQWRKLPADYY 433
>LLDD_HAEDU (Q7VPI9) L-lactate dehydrogenase [cytochrome] (EC 1.1.2.3)| Length = 381 Score = 33.5 bits (75), Expect = 0.48 Identities = 15/37 (40%), Positives = 23/37 (62%) Frame = -3 Query: 573 TAEGEAGVRNVLRMMREEFELTMALGGCTKLSDITRE 463 +A G AGV N+L + R+E + M L ++SDI R+ Sbjct: 337 SAAGRAGVENMLDIFRKEMHVAMTLTSNARISDINRD 373
>LLDD_VIBCH (Q9KKW6) L-lactate dehydrogenase [cytochrome] (EC 1.1.2.3)| Length = 378 Score = 32.0 bits (71), Expect = 1.4 Identities = 12/38 (31%), Positives = 24/38 (63%) Frame = -3 Query: 570 AEGEAGVRNVLRMMREEFELTMALGGCTKLSDITREHI 457 A+G AGV N+L + +E + M L G +++++R+ + Sbjct: 338 AQGRAGVENLLDLYEKEMRVAMTLTGAKSIAELSRDSL 375
>CLTR2_PIG (Q95N03) Cysteinyl leukotriene receptor 2 (CysLTR2)| Length = 345 Score = 31.6 bits (70), Expect = 1.8 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 3/69 (4%) Frame = -2 Query: 199 PARLAISTIFRTDYTILYFHVLLGPHVY---THRFCIYHTLSSSKAYLDTGIIWIHVELI 29 P R+ +++ Y+ +YF +L + H F + HT S A++ G+IWI + + Sbjct: 111 PCRIMSYSMYVNMYSSIYFLTVLSVVRFLATVHPFRLLHTTSIKNAWILCGVIWIFI-MA 169 Query: 28 KVQALLQGG 2 LL+ G Sbjct: 170 SSTVLLKNG 178
>LLDD_VIBPA (Q87G18) L-lactate dehydrogenase [cytochrome] (EC 1.1.2.3)| Length = 379 Score = 31.6 bits (70), Expect = 1.8 Identities = 13/38 (34%), Positives = 24/38 (63%) Frame = -3 Query: 570 AEGEAGVRNVLRMMREEFELTMALGGCTKLSDITREHI 457 A+G AGV N+L + +E + M L G ++D++R+ + Sbjct: 338 AQGGAGVENLLDLYDKEMRVAMTLTGAKTIADLSRDSL 375
>DSX_DROME (P23023) Protein doublesex| Length = 549 Score = 31.2 bits (69), Expect = 2.4 Identities = 24/87 (27%), Positives = 31/87 (35%), Gaps = 3/87 (3%) Frame = -2 Query: 520 VRAHHGARRVHQAQRHHPRTHLHRGRPPRTPAAEDVIKSQRHXXX---XXXXXXTAGHMH 350 V A A R QAQ H+H PP PAA ++ H A H H Sbjct: 82 VMALQTALRRAQAQDEQRALHMHEV-PPANPAATTLLSHHHHVAAPAHVHAHHVHAHHAH 140 Query: 349 ASQYPPQRNATHAIITANSISTTPSAP 269 + + H A + + PSAP Sbjct: 141 GGHHSHHGHVLHHQQAAAAAAAAPSAP 167
>IDI2_METBF (Q46CL4) Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2) (IPP| isomerase) (Isopentenyl pyrophosphate isomerase) Length = 365 Score = 30.8 bits (68), Expect = 3.1 Identities = 14/41 (34%), Positives = 20/41 (48%) Frame = -3 Query: 567 EGEAGVRNVLRMMREEFELTMALGGCTKLSDITREHIFTEG 445 EG+ V VL M +EF + M L GC + D+ + G Sbjct: 302 EGKESVVRVLSRMLDEFRIAMFLCGCANIQDLRNAPVVVTG 342
>IDI2_METMA (Q8PW37) Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2) (IPP| isomerase) (Isopentenyl pyrophosphate isomerase) Length = 365 Score = 30.4 bits (67), Expect = 4.0 Identities = 15/41 (36%), Positives = 20/41 (48%) Frame = -3 Query: 567 EGEAGVRNVLRMMREEFELTMALGGCTKLSDITREHIFTEG 445 EG+ V VL M EEF+ M L GC + D+ + G Sbjct: 302 EGKESVVRVLSCMLEEFKAAMFLCGCGNIKDLHNSPVVVTG 342
>SC5A2_RABIT (P26430) Sodium/nucleoside cotransporter (Na(+)/nucleoside| cotransporter) Length = 672 Score = 30.4 bits (67), Expect = 4.0 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%) Frame = +3 Query: 216 NLSTTAHRPRPDTHG*HLGADGVV-DIEFAVIIACVALRCGGYW 344 N+S++ +RPRPD++ HL D V D+ + ++ + + G YW Sbjct: 250 NISSSCYRPRPDSY--HLLRDPVTGDLPWPALLLGLTIVSGWYW 291
>SC5A2_MOUSE (Q923I7) Sodium/glucose cotransporter 2 (Na(+)/glucose| cotransporter 2) (Low affinity sodium-glucose cotransporter) Length = 670 Score = 30.4 bits (67), Expect = 4.0 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%) Frame = +3 Query: 216 NLSTTAHRPRPDTHG*HLGADGVV-DIEFAVIIACVALRCGGYW 344 N+S+T ++PRPD++ HL D V D+ + ++ + + G YW Sbjct: 248 NISSTCYQPRPDSY--HLLRDPVTGDLPWPALLLGLTIVSGWYW 289
>LLDD_XANOR (Q5H6Z4) L-lactate dehydrogenase [cytochrome] (EC 1.1.2.3)| Length = 388 Score = 30.4 bits (67), Expect = 4.0 Identities = 12/36 (33%), Positives = 23/36 (63%) Frame = -3 Query: 570 AEGEAGVRNVLRMMREEFELTMALGGCTKLSDITRE 463 A+G+AGV N+L ++ +E + M L G ++ I+ + Sbjct: 338 ADGQAGVENLLTLIEKEMRVAMTLTGTHSIAQISAD 373
>CLTR2_MOUSE (Q920A1) Cysteinyl leukotriene receptor 2 (CysLTR2)| Length = 309 Score = 30.4 bits (67), Expect = 4.0 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 3/66 (4%) Frame = -2 Query: 193 RLAISTIFRTDYTILYFHVLLGP---HVYTHRFCIYHTLSSSKAYLDTGIIWIHVELIKV 23 R+ +++ YT +YF +L H F ++H S A++ GIIW+ + Sbjct: 96 RVMSYSLYVNMYTSIYFLTVLSVVRFQATVHPFRMFHVTSVRSAWILCGIIWVFIMASSA 155 Query: 22 QALLQG 5 L+ G Sbjct: 156 LLLVNG 161
>PO3F2_RAT (P56222) POU domain, class 3, transcription factor 2 (Nervous| system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2) Length = 445 Score = 30.0 bits (66), Expect = 5.3 Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 5/33 (15%) Frame = -2 Query: 511 HHGARRVHQAQRH-----HPRTHLHRGRPPRTP 428 HHG R H H HP +H H+ PP P Sbjct: 214 HHGLRDAHDEPHHADHHPHPHSHPHQQPPPPPP 246
>PO3F2_MOUSE (P31360) POU domain, class 3, transcription factor 2 (Nervous| system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2) Length = 445 Score = 30.0 bits (66), Expect = 5.3 Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 5/33 (15%) Frame = -2 Query: 511 HHGARRVHQAQRH-----HPRTHLHRGRPPRTP 428 HHG R H H HP +H H+ PP P Sbjct: 214 HHGLRDAHDEPHHADHHPHPHSHPHQQPPPPPP 246
>PO3F2_HUMAN (P20265) POU domain, class 3, transcription factor 2 (Nervous| system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2) Length = 443 Score = 30.0 bits (66), Expect = 5.3 Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 5/33 (15%) Frame = -2 Query: 511 HHGARRVHQAQRH-----HPRTHLHRGRPPRTP 428 HHG R H H HP +H H+ PP P Sbjct: 212 HHGLRDAHDEPHHADHHPHPHSHPHQQPPPPPP 244
>FOXGA_HUMAN (P55316) Forkhead box protein G1A (Forkhead-related protein FKHL2)| (Transcription factor BF-2) (Brain factor 2) (BF2) (HFK2) Length = 469 Score = 29.6 bits (65), Expect = 6.9 Identities = 12/29 (41%), Positives = 12/29 (41%) Frame = -2 Query: 514 AHHGARRVHQAQRHHPRTHLHRGRPPRTP 428 A HG H Q HH H H PP P Sbjct: 35 ASHGHHNSHHPQHHHHHHHHHHHPPPPAP 63
>PFA5_YEAST (Q03289) Palmitoyltransferase PFA5 (EC 2.3.1.-) (Protein fatty| acyltransferase 5) Length = 374 Score = 29.6 bits (65), Expect = 6.9 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = +1 Query: 91 YDKYRIDECIRADPIGHGNTIWCSRCE 171 YD +C ++DP HG IWCS C+ Sbjct: 111 YDAVVPPKCYQSDP--HGYPIWCSECQ 135
>FOXGB_HUMAN (P55315) Forkhead box protein G1B (Forkhead-related protein FKHL1)| (Transcription factor BF-1) (Brain factor 1) (BF1) (HFK1) Length = 477 Score = 29.6 bits (65), Expect = 6.9 Identities = 12/29 (41%), Positives = 12/29 (41%) Frame = -2 Query: 514 AHHGARRVHQAQRHHPRTHLHRGRPPRTP 428 A HG H Q HH H H PP P Sbjct: 35 ASHGHHNSHHPQHHHHHHHHHHHPPPPAP 63
>MTCY_LEUME (P38577) Bacteriocin mesentericin Y105 precursor| Length = 61 Score = 29.6 bits (65), Expect = 6.9 Identities = 22/59 (37%), Positives = 30/59 (50%) Frame = +2 Query: 92 MINTESMSVYVRTQ*DMEIQYGVVGAKYGGNGETCRSTSTQKFIYYGSPSPAGHTRLAS 268 M N +S+ Y Q D + VVG KY GNG C T + + +G + AG RLA+ Sbjct: 1 MTNMKSVEAY--QQLDNQNLKKVVGGKYYGNGVHC--TKSGCSVNWGEAASAGIHRLAN 55
>DHOM_PSEAE (P29365) Homoserine dehydrogenase (EC 1.1.1.3) (HDH)| Length = 434 Score = 29.3 bits (64), Expect = 9.0 Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Frame = +3 Query: 168 RNMVEMARRAGRQVRKNLSTTAHRPRP--DTHG*HLGADGVVDIEFAVIIACVALRCGGY 341 RN E+ARRAGR + + A RP P DT + AD + D+ I V GGY Sbjct: 24 RNAEEIARRAGRGI-EVAQIAARRPNPKCDTGATPITAD-IFDVACNPEIDVVVELIGGY 81 Query: 342 WLA 350 LA Sbjct: 82 TLA 84
>HAOX2_RAT (Q07523) Hydroxyacid oxidase 2 (EC 1.1.3.15) (HAOX2)| ((S)-2-hydroxy-acid oxidase, peroxisomal) (Long chain alpha-hydroxy acid oxidase) (Long-chain L-2-hydroxy acid oxidase) Length = 352 Score = 29.3 bits (64), Expect = 9.0 Identities = 13/37 (35%), Positives = 22/37 (59%) Frame = -3 Query: 567 EGEAGVRNVLRMMREEFELTMALGGCTKLSDITREHI 457 +GE GV+ VL ++ E M L GC +++I+ + I Sbjct: 311 KGEDGVKEVLDILTAELHRCMTLSGCQSVAEISPDLI 347 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,731,187 Number of Sequences: 219361 Number of extensions: 1536000 Number of successful extensions: 4667 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 4398 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4635 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5216272880 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
