ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal5f02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NOTC4_HUMAN (Q99466) Neurogenic locus notch homolog protein 4 pr... 30 4.9
2OBSCN_HUMAN (Q5VST9) Obscurin (Obscurin-myosin light chain kinas... 30 6.4

>NOTC4_HUMAN (Q99466) Neurogenic locus notch homolog protein 4 precursor (Notch 4)|
            (hNotch4) [Contains: Notch 4 extracellular truncation;
            Notch 4 intracellular domain]
          Length = 2003

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
 Frame = +2

Query: 377  PKPLGCSPTHRGVEALAV------ELVRSRARRHGSTRLAKGGAQAGRTGASGAWADPAE 538
            P P+ CSP   GV  LA+      +L+R R R HG+  L  G  +  RT ++     P  
Sbjct: 1446 PWPVLCSPV-AGVILLALGALLVLQLIRRRRREHGALWLPPGFTRRPRTQSAPHRRRPPL 1504

Query: 539  GADS 550
            G DS
Sbjct: 1505 GEDS 1508



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>OBSCN_HUMAN (Q5VST9) Obscurin (Obscurin-myosin light chain kinase)|
            (Obscurin-MLCK) (Obscurin-RhoGEF)
          Length = 7968

 Score = 30.0 bits (66), Expect = 6.4
 Identities = 14/58 (24%), Positives = 33/58 (56%)
 Frame = +3

Query: 228  GNDSNGI*GNGHLACDLAWKKNESVKQTKQHSRANPHAPKRFVTRSGFQTPNPSVAVQ 401
            G D+ G+ G G +   +AW  ++S ++ ++ +RA   + ++   R+  ++P P V+ +
Sbjct: 7197 GGDAGGMLGQGPMWARIAWAVSQSEEEEQEEARAESQSEEQQEARA--ESPLPQVSAR 7252


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,783,109
Number of Sequences: 219361
Number of extensions: 1483435
Number of successful extensions: 3958
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3954
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6314008338
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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