Clone Name	rbaal5f02
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	gb|AY054380.1| Hordeum patagonicum clone HpaLTR-INS Sukkula retr...	184	2e-43
2	gb|AY054378.1| Hordeum vulgare clone HmaLTR-INS Sukkula retrotra...	180	4e-42
3	gb|AF509775.1| Hordeum vulgare subsp. vulgare isolate RSB409A Rp...	180	4e-42
4	gb|AF509774.1| Hordeum vulgare subsp. vulgare isolate RSB347 Rpg...	167	6e-38
5	gb|AY054379.1| Hordeum murinum clone HmuLTR-INS Sukkula retrotra...	143	8e-31
6	gb|AF453665.1| Hordeum vulgare isolate HV Sukkula retrotransposo...	127	5e-26
7	gb|AY054377.1| Hordeum vulgare clone LTR-INS1 Sukkula retrotrans...	127	5e-26
8	gb|AY054376.1| Hordeum vulgare Sukkula retrotransposon long term...	127	5e-26
9	gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, ...	127	5e-26
10	gb|AY643843.1|AY643842S2 Hordeum vulgare subsp. vulgare clones B...	123	8e-25
11	emb|Y14573.1|HVCH4H Hordeum vulgare DNA for chromosome 4H	123	8e-25
12	gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complet...	119	1e-23
13	gb|AF254799.1|AF254799 Hordeum vulgare tonoplast intrinsic prote...	111	3e-21
14	gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, comple...	109	1e-20
15	gb|AF474072.1| Hordeum vulgare sp. vulgare cultivar Morex BAC cl...	107	5e-20
16	gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones B...	101	3e-18
17	gb|AF326781.1| Triticum monococcum actin (ACT-1) gene, partial c...	46	0.15
18	gb|AY663392.1| Triticum aestivum cultivar Renan clone BAC 930H14...	44	0.58
19	gb|AC155829.5| Mus musculus 10 BAC RP24-534E16 (Roswell Park Can...	44	0.58
20	gb|AY188331.1| Triticum monococcum DV92 chromosome 5AL BAC 231A1...	44	0.58
21	gb|AC107746.9| Mus musculus chromosome 1, clone RP23-311K2, comp...	44	0.58
22	gb|AY485644.1| Triticum monococcum phosphatidylserine decarboxyl...	42	2.3
23	emb|AL590093.10| Human DNA sequence from clone RP11-240D10 on ch...	42	2.3
24	gb|DP000040.1| Otolemur garnettii target 106 genomic scaffold	42	2.3
25	emb|BX539336.7| Zebrafish DNA sequence from clone CH211-128H21 i...	42	2.3
26	gb|AC011736.4|AC011736 Homo sapiens BAC clone CTD-2331A14 from 1...	42	2.3
27	gb|AY105889.1| Zea mays PCO106909 mRNA sequence	42	2.3
28	ref|XM_517875.1| PREDICTED: Pan troglodytes similar to Adenomato...	40	9.0
29	ref|XM_479184.1| Oryza sativa (japonica cultivar-group), mRNA	40	9.0
30	ref|XM_506479.1| PREDICTED Oryza sativa (japonica cultivar-group...	40	9.0
31	gb|CP000081.1| Leishmania major chromosome 35, complete sequence	40	9.0
32	gb|CP000066.1| Trypanosoma brucei chromosome 3, complete sequence	40	9.0
33	gb|AC091330.18| Trypanosoma brucei chromosome 3 clone RPCI93-48O...	40	9.0
34	gb|AC093439.2| Drosophila melanogaster clone BACR28A12, complete...	40	9.0
35	gb|AC140205.2| Mus musculus BAC clone RP24-344F2 from chromosome...	40	9.0
36	gb|BC098089.1| Xenopus tropicalis hypothetical protein mgc107988...	40	9.0
37	ref|NM_001032336.1| Xenopus tropicalis hypothetical protein mgc1...	40	9.0
38	gb|AC073345.11| Homo sapiens BAC clone RP11-630O5 from 7, comple...	40	9.0
39	gb|AC006004.2| Homo sapiens PAC clone RP4-803F10 from 7, complet...	40	9.0
40	gb|AC145906.2| Pan troglodytes BAC clone RP43-9J5 from 7, comple...	40	9.0
41	gb|AE014304.1| Homo sapiens chromosome 13q34 schizophrenia regio...	40	9.0
42	gb|AC161189.11| Mus musculus chromosome 8, clone RP23-337N9, com...	40	9.0
43	gb|AC146207.3| Pan troglodytes BAC clone RP43-25M19 from 7, comp...	40	9.0
44	gb|AF390525.1| Eucalyptus curtisii 18S ribosomal RNA gene, parti...	40	9.0
45	gb|AF390524.1| Eucalyptus curtisii 18S ribosomal RNA gene, parti...	40	9.0
46	emb|AL512484.13| Human DNA sequence from clone RP11-26A3 on chro...	40	9.0
47	emb|AL359091.10| Human DNA sequence from clone RP11-339B21 on ch...	40	9.0
48	emb|AL158062.22| Human DNA sequence from clone RP11-144H23 on ch...	40	9.0
49	emb|AL161771.17| Human DNA sequence from clone RP11-11L8 on chro...	40	9.0
50	gb|AC162382.8| Mus musculus 6 BAC RP24-398M13 (Roswell Park Canc...	40	9.0
51	emb|AL596086.9| Mouse DNA sequence from clone RP23-168C20 on chr...	40	9.0
52	gb|AC109473.2| Homo sapiens chromosome 5 clone RP11-3B10, comple...	40	9.0
53	gb|CP000249.1| Frankia sp. CcI3, complete genome	40	9.0
54	gb|AY951944.1| Triticum monococcum TmBAC 21C6 FR-Am2 locus, geno...	40	9.0
55	gb|AC020750.4| Homo sapiens chromosome 3 clone RP11-105H19 map 3...	40	9.0
56	gb|AC115695.11| Mus musculus chromosome 5, clone RP24-229D18, co...	40	9.0
57	dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D...	40	9.0
58	dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D...	40	9.0
59	gb|AC007711.9|AC007711 Drosophila melanogaster, chromosome 3R, r...	40	9.0
60	gb|AC148299.3| Pan troglodytes BAC clone CH251-484A18 from chrom...	40	9.0
61	gb|AY205563.1| Chlamydomonas reinhardtii genomic sequence	40	9.0
62	dbj|AP004380.2| Oryza sativa (japonica cultivar-group) genomic D...	40	9.0
63	dbj|AP002526.1| Oryza sativa (japonica cultivar-group) genomic D...	40	9.0
64	dbj|AK071567.1| Oryza sativa (japonica cultivar-group) cDNA clon...	40	9.0
65	dbj|AK059824.1| Oryza sativa (japonica cultivar-group) cDNA clon...	40	9.0
66	emb|BX470120.5| Zebrafish DNA sequence from clone CH211-11I16 in...	40	9.0
67	gb|AC006312.8|AC006312 Homo sapiens chromosome 9, clone hRPK.40...	40	9.0
68	gb|AE003728.3| Drosophila melanogaster chromosome 3R, section 66...	40	9.0
69	gb|AE003636.4| Drosophila melanogaster chromosome 2L, section 45...	40	9.0
70	gb|AC006470.1|AC006470 Drosophila melanogaster, chromosome 2R, r...	40	9.0
71	gb|AC110192.14| Mus musculus chromosome 7, clone RP23-227K15, co...	40	9.0
72	dbj|D13981.1|HUMAPC2 Homo sapiens gene for APC, exon 1B	40	9.0
73	emb|AL844881.5| Mouse DNA sequence from clone RP23-244B19 on chr...	40	9.0
74	gb|AC136500.1| Homo sapiens chromosome 5 clone RP11-56P2, comple...	40	9.0

---

>gb|AY054380.1| Hordeum patagonicum clone HpaLTR-INS Sukkula retrotransposon long
            terminal repeat, complete sequence
          Length = 7731

 Score =  184 bits (93), Expect = 2e-43
 Identities = 255/300 (85%), Gaps = 8/300 (2%)
 Strand = Plus / Minus

                                                                        
Query: 50   tggaagcaaatgcacctacaactatcaacactataagaaggt-tgagcaagtggtaacat 108
            ||||| |||| |||||| |||||| |||| |||||||||||  ||||||||  |||||||
Sbjct: 3004 tggaaacaaaagcacctgcaactagcaacgctataagaagggctgagcaagcagtaacat 2945

                                                                        
Query: 109  agccaaatagtggtttgctaggttgtggaaaggttagaggtttatcatggcaatgtttgg 168
            ||||||| | || |||||| || | ||||  ||||||||| || |||||||||| || ||
Sbjct: 2944 agccaaacaatg-tttgctgggatctggaggggttagaggcttttcatggcaat-ttggg 2887

                                                                        
Query: 169  aggct-gacatttaagtggtaggaagcaaggcatagcggaagaaacaagataactagcat 227
            ||||| |||||  | |||||||| ||| || ||  |||  |||||| ||| |||||||||
Sbjct: 2886 aggcttgacataca-gtggtaggtagcgagaca--gcgatagaaacgagacaactagcat 2830

                                                                        
Query: 228  ggcaatgatagtaatggtatctagggaaatgg-tcatcttgcgtgtgatctcgcttggaa 286
            ||||||||||||||||||||| |||||||||| ||||||||| || |||| |||||||||
Sbjct: 2829 ggcaatgatagtaatggtatccagggaaatgggtcatcttgcctgagatcccgcttggaa 2770

                                                                        
Query: 287  gaagaacgaatccgtgaagcagacaaaacaacatagtcgagcgaatcctcacgctccgaa 346
            ||||||||||||||||||| |||| |  |||||||||||| ||||||||||| |||||||
Sbjct: 2769 gaagaacgaatccgtgaagaagacgagccaacatagtcgaacgaatcctcacactccgaa 2710

---

>gb|AY054378.1| Hordeum vulgare clone HmaLTR-INS Sukkula retrotransposon long
            terminal repeat, complete sequence
          Length = 7919

 Score =  180 bits (91), Expect = 4e-42
 Identities = 259/311 (83%), Gaps = 3/311 (0%)
 Strand = Plus / Minus

                                                                        
Query: 39   atgttttcacatggaagcaaatgcacctacaactatcaacactataagaagg-ttgagca 97
            ||||| || ||||||||||| ||||||| || |||  ||| ||||||||||| |||||||
Sbjct: 3106 atgttgtcgcatggaagcaactgcacctgcagctagaaacgctataagaagggttgagca 3047

                                                                        
Query: 98   agtggtaacatagccaaatagtggtttgctaggttgtggaaaggttagaggtttatcatg 157
            || ||||||||||||||| |  |||||||| || |||| |  || |||||| ||||||||
Sbjct: 3046 agcggtaacatagccaaacaaaggtttgctgggatgtgaaggggctagaggcttatcatg 2987

                                                                        
Query: 158  gcaatgtttggaggct-gacatttaagtggtaggaagcaaggcatagcggaagaaacaag 216
            |||||||| ||||||| ||||   |||||||||| |||||| |||| ||| |||| || |
Sbjct: 2986 gcaatgttgggaggctcgacaaacaagtggtaggtagcaagacataacggtagaagcagg 2927

                                                                        
Query: 217  ataactagcatggcaatgatagtaatggtatctagggaaatg-gtcatcttgcgtgtgat 275
            | ||||||||| |||||||||||| ||||||| | ||||||| |||||||||| || |||
Sbjct: 2926 acaactagcatagcaatgatagtagtggtatccacggaaatgtgtcatcttgcctgagat 2867

                                                                        
Query: 276  ctcgcttggaagaagaacgaatccgtgaagcagacaaaacaacatagtcgagcgaatcct 335
            | |||| ||||||||||||| ||| ||||| |||  |  |||| | ||||| ||||||||
Sbjct: 2866 cccgctcggaagaagaacgattccatgaagaagatgagccaacgttgtcgaacgaatcct 2807

                       
Query: 336  cacgctccgaa 346
            ||| |||||||
Sbjct: 2806 cacactccgaa 2796

---

>gb|AF509775.1| Hordeum vulgare subsp. vulgare isolate RSB409A Rpg1 region, genomic
            sequence
          Length = 7321

 Score =  180 bits (91), Expect = 4e-42
 Identities = 251/301 (83%), Gaps = 5/301 (1%)
 Strand = Plus / Minus

                                                                        
Query: 14   taatatggtgatataacaaggaact-atgttttcacatggaagcaaatgcacctacaact 72
            |||||||||||||| |||||||||| ||||| |||||||||||||| ||||||| ||| |
Sbjct: 6352 taatatggtgatatgacaaggaactcatgttatcacatggaagcaactgcacctgcaagt 6293

                                                                        
Query: 73   atcaacactataagaaggttgagcaagtggtaacatagccaaatagtggtttgctaggtt 132
            | |||| |||  | | |||  | ||||  |||||||||||||  |||||||| |||||||
Sbjct: 6292 agcaacgctaacatatggtaaaacaagcagtaacatagccaatcagtggtttactaggtt 6233

                                                                        
Query: 133  gtggaaaggttagaggtttatcatggcaatgtttggaggctgacatttaa---gtggtag 189
            ||| | |||||  | |||| | ||||||||||| ||||||||| ||||||   |||||||
Sbjct: 6232 gtgaacaggttgaatgttt-tgatggcaatgttgggaggctgatatttaacatgtggtag 6174

                                                                        
Query: 190  gaagcaaggcatagcggaagaaacaagataactagcatggcaatgatagtaatggtatct 249
            | | | || |||||||  |||| | ||| ||||| ||||||||||||||||||| |||| 
Sbjct: 6173 gcaacgagacatagcgatagaagcgagacaactaacatggcaatgatagtaatgatatcg 6114

                                                                        
Query: 250  agggaaatggtcatcttgcgtgtgatctcgcttggaagaagaacgaatccgtgaagcaga 309
             |||||||||||||||| | || ||||  |||||||||||||||||||||||||||||||
Sbjct: 6113 ggggaaatggtcatctttcctgagatcctgcttggaagaagaacgaatccgtgaagcaga 6054

             
Query: 310  c 310
            |
Sbjct: 6053 c 6053

---

>gb|AF509774.1| Hordeum vulgare subsp. vulgare isolate RSB347 Rpg1 region, genomic
            sequence
          Length = 3124

 Score =  167 bits (84), Expect = 6e-38
 Identities = 252/302 (83%), Gaps = 7/302 (2%)
 Strand = Plus / Minus

                                                                        
Query: 14   taatatggtgatataacaaggaact-atgttttcacatggaagcaaatgcacctacaact 72
            |||||||||||||| |||||||||| ||||| |||||||||||||| ||||||| ||| |
Sbjct: 1123 taatatggtgatatgacaaggaactcatgttatcacatggaagcaactgcacctgcaagt 1064

                                                                        
Query: 73   atcaacactataagaa-ggttgagcaagtggtaacatagccaaatagtggtttgctaggt 131
            | |||| |  ||| || |||  | ||||  |||||||||||||  |||||||| ||||||
Sbjct: 1063 agcaac-cgctaacaatggtaaaacaagcagtaacatagccaatcagtggtttactaggt 1005

                                                                        
Query: 132  tgtggaaaggttagaggtttatcatggcaatgtttggaggctgacatttaa---gtggta 188
            |||| | |||||  | |||| | ||||||||||| ||||||||| ||||||   ||||||
Sbjct: 1004 tgtgaacaggttgaatgttt-tgatggcaatgttgggaggctgatatttaacatgtggta 946

                                                                        
Query: 189  ggaagcaaggcatagcggaagaaacaagataactagcatggcaatgatagtaatggtatc 248
            || | | || |||||||  |||| | ||| ||||| ||||||||||||||||||| ||||
Sbjct: 945  ggcaacgagacatagcgatagaagcgagacaactaacatggcaatgatagtaatgatatc 886

                                                                        
Query: 249  tagggaaatggtcatcttgcgtgtgatctcgcttggaagaagaacgaatccgtgaagcag 308
              |||||||||||||||| | || ||||  ||||||||||||||||||||||||||||||
Sbjct: 885  gggggaaatggtcatctttcctgagatcctgcttggaagaagaacgaatccgtgaagcag 826

              
Query: 309  ac 310
            ||
Sbjct: 825  ac 824

---

>gb|AY054379.1| Hordeum murinum clone HmuLTR-INS Sukkula retrotransposon long
            terminal repeat, complete sequence
          Length = 7586

 Score =  143 bits (72), Expect = 8e-31
 Identities = 114/128 (89%)
 Strand = Plus / Minus

                                                                        
Query: 219  aactagcatggcaatgatagtaatggtatctagggaaatggtcatcttgcgtgtgatctc 278
            |||||||||||||||||||||||||||||| ||||||||| |||||||||  | |||| |
Sbjct: 2635 aactagcatggcaatgatagtaatggtatccagggaaatgatcatcttgcccgagatccc 2576

                                                                        
Query: 279  gcttggaagaagaacgaatccgtgaagcagacaaaacaacatagtcgagcgaatcctcac 338
            |||||||||||||||||| |||||||| | || || |||| ||||||| |||||||||||
Sbjct: 2575 gcttggaagaagaacgaaaccgtgaagtaaacgaaccaacgtagtcgaacgaatcctcac 2516

                    
Query: 339  gctccgaa 346
             |||||||
Sbjct: 2515 actccgaa 2508



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 53/61 (86%), Gaps = 1/61 (1%)
 Strand = Plus / Minus

                                                                        
Query: 56   caaatgcacctacaactatcaacactataagaaggt-tgagcaagtggtaacatagccaa 114
            |||| |||||| |||||| |||  |||||||||||  |||||||| ||||||||||||||
Sbjct: 2796 caaaagcacctgcaactagcaatgctataagaagggctgagcaagcggtaacatagccaa 2737

             
Query: 115  a 115
            |
Sbjct: 2736 a 2736

---

>gb|AF453665.1| Hordeum vulgare isolate HV Sukkula retrotransposon, partial sequence
          Length = 7674

 Score =  127 bits (64), Expect = 5e-26
 Identities = 106/120 (88%)
 Strand = Plus / Minus

                                                                        
Query: 219  aactagcatggcaatgatagtaatggtatctagggaaatggtcatcttgcgtgtgatctc 278
            ||||||||||||||||||||||||||||||| |||||||| ||||||||| || |||| |
Sbjct: 2705 aactagcatggcaatgatagtaatggtatctggggaaatgatcatcttgcctgagatccc 2646

                                                                        
Query: 279  gcttggaagaagaacgaatccgtgaagcagacaaaacaacatagtcgagcgaatcctcac 338
            |||||||||||||| |  |||||||||||||| || | || ||||||| ||| |||||||
Sbjct: 2645 gcttggaagaagaatgcctccgtgaagcagacgaaccgacgtagtcgaacgagtcctcac 2586



 Score =  107 bits (54), Expect = 5e-20
 Identities = 119/137 (86%), Gaps = 4/137 (2%)
 Strand = Plus / Minus

                                                                        
Query: 1    taaattaatagcat--aatatggtgatataacaaggaact-atgttttcacatggaagca 57
            ||||||||||||||  |||| ||||||||||||||||||  ||| |||||||||||||||
Sbjct: 2926 taaattaatagcatttaatagggtgatataacaaggaacccatgctttcacatggaagca 2867

                                                                        
Query: 58   aatgcacctacaactatcaacactat-aagaaggttgagcaagtggtaacatagccaaat 116
            | ||||||| |||||| |||| |||| || | |||| ||||||  |||||||||||||  
Sbjct: 2866 actgcacctgcaactagcaacgctatcaacagggttaagcaagcagtaacatagccaatc 2807

                             
Query: 117  agtggtttgctaggttg 133
            |||||||||||||||||
Sbjct: 2806 agtggtttgctaggttg 2790

---

>gb|AY054377.1| Hordeum vulgare clone LTR-INS1 Sukkula retrotransposon long terminal
            repeat, complete sequence
          Length = 7575

 Score =  127 bits (64), Expect = 5e-26
 Identities = 106/120 (88%)
 Strand = Plus / Minus

                                                                        
Query: 219  aactagcatggcaatgatagtaatggtatctagggaaatggtcatcttgcgtgtgatctc 278
            ||||||||||||||||||||||||||||||| |||||||| ||||||||| || |||| |
Sbjct: 2705 aactagcatggcaatgatagtaatggtatctggggaaatgatcatcttgcctgagatccc 2646

                                                                        
Query: 279  gcttggaagaagaacgaatccgtgaagcagacaaaacaacatagtcgagcgaatcctcac 338
            |||||||||||||| |  |||||||||||||| || | || ||||||| ||| |||||||
Sbjct: 2645 gcttggaagaagaatgcctccgtgaagcagacgaaccgacgtagtcgaacgagtcctcac 2586



 Score =  107 bits (54), Expect = 5e-20
 Identities = 119/137 (86%), Gaps = 4/137 (2%)
 Strand = Plus / Minus

                                                                        
Query: 1    taaattaatagcat--aatatggtgatataacaaggaact-atgttttcacatggaagca 57
            ||||||||||||||  |||| ||||||||||||||||||  ||| |||||||||||||||
Sbjct: 2926 taaattaatagcatttaatagggtgatataacaaggaacccatgctttcacatggaagca 2867

                                                                        
Query: 58   aatgcacctacaactatcaacactat-aagaaggttgagcaagtggtaacatagccaaat 116
            | ||||||| |||||| |||| |||| || | |||| ||||||  |||||||||||||  
Sbjct: 2866 actgcacctgcaactagcaacgctatcaacagggttaagcaagcagtaacatagccaatc 2807

                             
Query: 117  agtggtttgctaggttg 133
            |||||||||||||||||
Sbjct: 2806 agtggtttgctaggttg 2790

---

>gb|AY054376.1| Hordeum vulgare Sukkula retrotransposon long terminal repeat, partial
            and complete sequences
          Length = 11820

 Score =  127 bits (64), Expect = 5e-26
 Identities = 106/120 (88%)
 Strand = Plus / Minus

                                                                        
Query: 219  aactagcatggcaatgatagtaatggtatctagggaaatggtcatcttgcgtgtgatctc 278
            ||||||||||||||||||||||||||||||| |||||||| ||||||||| || |||| |
Sbjct: 2705 aactagcatggcaatgatagtaatggtatctggggaaatgatcatcttgcctgagatccc 2646

                                                                        
Query: 279  gcttggaagaagaacgaatccgtgaagcagacaaaacaacatagtcgagcgaatcctcac 338
            |||||||||||||| |  |||||||||||||| || | || ||||||| ||| |||||||
Sbjct: 2645 gcttggaagaagaatgcctccgtgaagcagacgaaccgacgtagtcgaacgagtcctcac 2586



 Score =  117 bits (59), Expect = 5e-23
 Identities = 71/75 (94%)
 Strand = Plus / Minus

                                                                         
Query: 219   aactagcatggcaatgatagtaatggtatctagggaaatggtcatcttgcgtgtgatctc 278
             ||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||| |
Sbjct: 10236 aactagcatggcaatgatagtaatggtatctggggaaatgatcatcttgcgtgagatccc 10177

                            
Query: 279   gcttggaagaagaac 293
             |||||||||||||||
Sbjct: 10176 gcttggaagaagaac 10162



 Score =  107 bits (54), Expect = 5e-20
 Identities = 119/137 (86%), Gaps = 4/137 (2%)
 Strand = Plus / Minus

                                                                        
Query: 1    taaattaatagcat--aatatggtgatataacaaggaact-atgttttcacatggaagca 57
            ||||||||||||||  |||| ||||||||||||||||||  ||| |||||||||||||||
Sbjct: 2926 taaattaatagcatttaatagggtgatataacaaggaacccatgctttcacatggaagca 2867

                                                                        
Query: 58   aatgcacctacaactatcaacactat-aagaaggttgagcaagtggtaacatagccaaat 116
            | ||||||| |||||| |||| |||| || | |||| ||||||  |||||||||||||  
Sbjct: 2866 actgcacctgcaactagcaacgctatcaacagggttaagcaagcagtaacatagccaatc 2807

                             
Query: 117  agtggtttgctaggttg 133
            |||||||||||||||||
Sbjct: 2806 agtggtttgctaggttg 2790



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 99/119 (83%), Gaps = 1/119 (0%)
 Strand = Plus / Minus

                                                                         
Query: 14    taatatggtgatataacaaggaact-atgttttcacatggaagcaaatgcacctacaact 72
             ||||||||||||||||| ||||||  |||||||||||||||||||  ||||||| |||||
Sbjct: 10442 taatatggtgatataactaggaacccatgttttcacatggaagcatctgcacctgcaact 10383

                                                                        
Query: 73    atcaacactataagaaggttgagcaagtggtaacatagccaaatagtggtttgctaggt 131
             | ||||  ||  |  | | | ||||||  |||||||||||||  |||||||||||||||
Sbjct: 10382 agcaacgttaacaacatggtaagcaagcagtaacatagccaatcagtggtttgctaggt 10324

---

>gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, complete sequence
          Length = 439641

 Score =  127 bits (64), Expect = 5e-26
 Identities = 97/108 (89%)
 Strand = Plus / Minus

                                                                          
Query: 219    aactagcatggcaatgatagtaatggtatctagggaaatggtcatcttgcgtgtgatctc 278
              ||||||||||||||||||||||||||||||| |||||||||||||||||| || |||| |
Sbjct: 325649 aactagcatggcaatgatagtaatggtatctggggaaatggtcatcttgcctgagatccc 325590

                                                              
Query: 279    gcttggaagaagaacgaatccgtgaagcagacaaaacaacatagtcga 326
               |||||||||||||| | ||||||||| |||| || |||| |||||||
Sbjct: 325589 acttggaagaagaacaactccgtgaagtagacgaaccaacgtagtcga 325542



 Score =  117 bits (59), Expect = 5e-23
 Identities = 146/170 (85%), Gaps = 5/170 (2%)
 Strand = Plus / Minus

                                                                          
Query: 15     aatatggtgatataacaaggaact-atgttttcacatggaagcaaatgcacctacaacta 73
              |||||||||||||||||||||||  |||||||||||||||||||| ||||||| ||||||
Sbjct: 177634 aatatggtgatataacaaggaacccatgttttcacatggaagcaactgcacctgcaacta 177575

                                                                          
Query: 74     tcaacactat-aagaaggttgagcaagtggtaacatagccaaatagtggtttgctaggtt 132
               |||| |||| || | |||| ||||||  |||||||||||||  ||||||||||||||||
Sbjct: 177574 gcaacgctatcaacagggttaagcaagcagtaacatagccaatcagtggtttgctaggtt 177515

                                                                
Query: 133    gtggaaaggttagaggtttatcatggcaatgtttggaggctgacatttaa 182
              |   | ||||| || ||||||||||||| ||||  |||||||| ||||||
Sbjct: 177514 ga--acaggtt-gaagtttatcatggcattgttgagaggctgatatttaa 177468



 Score =  117 bits (59), Expect = 5e-23
 Identities = 80/87 (91%)
 Strand = Plus / Minus

                                                                          
Query: 219    aactagcatggcaatgatagtaatggtatctagggaaatggtcatcttgcgtgtgatctc 278
              ||||||||||||||||||||||||||||||| |||||||||||||||||| || |||| |
Sbjct: 177427 aactagcatggcaatgatagtaatggtatctggggaaatggtcatcttgcctgagatccc 177368

                                         
Query: 279    gcttggaagaagaacgaatccgtgaag 305
              |||||||||||||| |  |||||||||
Sbjct: 177367 gcttggaagaagaatgtctccgtgaag 177341



 Score =  113 bits (57), Expect = 8e-22
 Identities = 81/89 (91%)
 Strand = Plus / Minus

                                                                          
Query: 219    aactagcatggcaatgatagtaatggtatctagggaaatggtcatcttgcgtgtgatctc 278
              |||||||||||||||||||||||||||||||  ||||||||||||||||| || |||| |
Sbjct: 130094 aactagcatggcaatgatagtaatggtatctgtggaaatggtcatcttgcctgagatccc 130035

                                           
Query: 279    gcttggaagaagaacgaatccgtgaagca 307
              |||||||||||||| |  |||||||||||
Sbjct: 130034 gcttggaagaagaatgtctccgtgaagca 130006



 Score =  105 bits (53), Expect = 2e-19
 Identities = 106/121 (87%), Gaps = 2/121 (1%)
 Strand = Plus / Minus

                                                                          
Query: 15     aatatggtgatataacaaggaact-atgttttcacatggaagcaaatgcacctacaacta 73
              |||||||||||||||||||||||  |||||||||||||||||||| ||||||| ||||||
Sbjct: 130301 aatatggtgatataacaaggaacccatgttttcacatggaagcaactgcacctgcaacta 130242

                                                                          
Query: 74     tcaacactat-aagaaggttgagcaagtggtaacatagccaaatagtggtttgctaggtt 132
               |||| |||| || | |||| ||||||  |||||||||| ||  ||||||||||||||||
Sbjct: 130241 gcaacgctatcaacagggttaagcaagcagtaacatagctaatcagtggtttgctaggtt 130182

               
Query: 133    g 133
              |
Sbjct: 130181 g 130181



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 103/121 (85%), Gaps = 1/121 (0%)
 Strand = Plus / Minus

                                                                          
Query: 14     taatatggtgatataacaaggaact-atgttttcacatggaagcaaatgcacctacaact 72
              |||||||||||||| |||||| ||  ||||| ||||||||||| || ||||||  |||||
Sbjct: 325856 taatatggtgatatgacaagggacccatgttatcacatggaaggaactgcaccggcaact 325797

                                                                          
Query: 73     atcaacactataagaaggttgagcaagtggtaacatagccaaatagtggtttgctaggtt 132
              | |||| |||  | | |||| |||||| |||||||||||||| |||||||||||||||||
Sbjct: 325796 agcaacgctaacacagggttaagcaagcggtaacatagccaattagtggtttgctaggtt 325737

               
Query: 133    g 133
              |
Sbjct: 325736 g 325736

---

>gb|AY643843.1|AY643842S2 Hordeum vulgare subsp. vulgare clones BAC 519K7 and 799C8 hardness
             locus region
          Length = 129099

 Score =  123 bits (62), Expect = 8e-25
 Identities = 86/94 (91%)
 Strand = Plus / Plus

                                                                         
Query: 217   ataactagcatggcaatgatagtaatggtatctagggaaatggtcatcttgcgtgtgatc 276
             ||||||||||||||||||||||||||||||||| |||||||| ||||||||| || ||||
Sbjct: 69636 ataactagcatggcaatgatagtaatggtatctggggaaatgatcatcttgcctgagatc 69695

                                               
Query: 277   tcgcttggaagaagaacgaatccgtgaagcagac 310
              ||||||||||||||| |  ||||||||||||||
Sbjct: 69696 ccgcttggaagaagaatgcctccgtgaagcagac 69729



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 102/120 (85%), Gaps = 2/120 (1%)
 Strand = Plus / Plus

                                                                         
Query: 16    atatggtgatataacaaggaact-atgttttcacatggaagcaaatgcacctacaactat 74
             |||||||||||| |||||||||  |||| | ||||||||||||| ||||||| |||||| 
Sbjct: 69432 atatggtgatatgacaaggaacccatgtatccacatggaagcaactgcacctgcaactag 69491

                                                                         
Query: 75    caacactat-aagaaggttgagcaagtggtaacatagccaaatagtggtttgctaggttg 133
             |||| |||| || | |||| ||||||  |||||||| ||||  |||||||||||||||||
Sbjct: 69492 caacgctatcaacagggttaagcaagcagtaacataaccaatcagtggtttgctaggttg 69551

---

>emb|Y14573.1|HVCH4H Hordeum vulgare DNA for chromosome 4H
          Length = 59748

 Score =  123 bits (62), Expect = 8e-25
 Identities = 86/94 (91%)
 Strand = Plus / Plus

                                                                         
Query: 217   ataactagcatggcaatgatagtaatggtatctagggaaatggtcatcttgcgtgtgatc 276
             ||||||||||||||||||||||||||||||||| |||||||| ||||||||| || ||||
Sbjct: 38784 ataactagcatggcaatgatagtaatggtatctggggaaatgatcatcttgcctgagatc 38843

                                               
Query: 277   tcgcttggaagaagaacgaatccgtgaagcagac 310
              ||||||||||||||| |  ||||||||||||||
Sbjct: 38844 ccgcttggaagaagaatgcctccgtgaagcagac 38877



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 103/120 (85%), Gaps = 2/120 (1%)
 Strand = Plus / Plus

                                                                         
Query: 14    taatatggtgatataacaaggaa-ctatgttttcacatggaagcaaatgcacctacaact 72
             ||||||||||||||||||||||| |  || |||| ||||||||||| ||||||| |||||
Sbjct: 38579 taatatggtgatataacaaggaacccgtgctttcgcatggaagcaactgcacctgcaact 38638

                                                                         
Query: 73    atcaacactat-aagaaggttgagcaagtggtaacatagccaaatagtggtttgctaggt 131
             | |||| |||| || | |||| ||||||  |||||||||||||  |||||||||||||||
Sbjct: 38639 aacaacgctatcaacagggttaagcaagcagtaacatagccaatcagtggtttgctaggt 38698

---

>gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complete sequence
          Length = 114996

 Score =  119 bits (60), Expect = 1e-23
 Identities = 84/92 (91%)
 Strand = Plus / Plus

                                                                          
Query: 219    aactagcatggcaatgatagtaatggtatctagggaaatggtcatcttgcgtgtgatctc 278
              |||||||||||||||||||||||||||||||||| ||||| ||||||||| || |||| |
Sbjct: 104290 aactagcatggcaatgatagtaatggtatctaggaaaatgatcatcttgcctgagatccc 104349

                                              
Query: 279    gcttggaagaagaacgaatccgtgaagcagac 310
              || |||||||||||| | ||||||||||||||
Sbjct: 104350 gcctggaagaagaacaactccgtgaagcagac 104381



 Score =  113 bits (57), Expect = 8e-22
 Identities = 107/121 (88%), Gaps = 2/121 (1%)
 Strand = Plus / Plus

                                                                          
Query: 15     aatatggtgatataacaaggaact-atgttttcacatggaagcaaatgcacctacaacta 73
              |||||||||||||||||||||||  |||||||||||||||||||  ||||||| ||||||
Sbjct: 104084 aatatggtgatataacaaggaacccatgttttcacatggaagcatctgcacctgcaacta 104143

                                                                          
Query: 74     tcaacactat-aagaaggttgagcaagtggtaacatagccaaatagtggtttgctaggtt 132
               |||| |||| || | |||| |||||| ||||||||||||||  ||||||||||||||||
Sbjct: 104144 gcaacgctatcaacagggttaagcaagcggtaacatagccaatcagtggtttgctaggtt 104203

               
Query: 133    g 133
              |
Sbjct: 104204 g 104204

---

>gb|AF254799.1|AF254799 Hordeum vulgare tonoplast intrinsic protein 1 (TIP1), tonoplast
            intrinsic protein 2 (TIP2), and Rar1 (Rar1) genes,
            complete cds
          Length = 65979

 Score =  111 bits (56), Expect = 3e-21
 Identities = 83/92 (90%)
 Strand = Plus / Minus

                                                                        
Query: 219  aactagcatggcaatgatagtaatggtatctagggaaatggtcatcttgcgtgtgatctc 278
            ||||||||||||||||||||||||||||||| |||||||| ||||||||| || |||| |
Sbjct: 9588 aactagcatggcaatgatagtaatggtatctggggaaatgatcatcttgcctgagatccc 9529

                                            
Query: 279  gcttggaagaagaacgaatccgtgaagcagac 310
            |||||||||| ||| |  ||||||||||||||
Sbjct: 9528 gcttggaagaggaatgcctccgtgaagcagac 9497



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 106/122 (86%), Gaps = 3/122 (2%)
 Strand = Plus / Minus

                                                                        
Query: 14   taatatggtgatataacaaggaact-atgttttcacatggaagcaaatgcacctacaact 72
            ||||||||||||||||||||||||  |||||| ||||||||||||| ||||||| |||||
Sbjct: 9794 taatatggtgatataacaaggaacccatgttt-cacatggaagcaactgcacctgcaact 9736

                                                                        
Query: 73   atcaacactat-aagaaggttgagcaagtggtaacatagccaaatagtggtttgctaggt 131
            | |||| |||| || | |||| ||||||  |||||||||||||   ||||||||||||||
Sbjct: 9735 agcaacgctatcaacagggttaagcaagcagtaacatagccaatctgtggtttgctaggt 9676

              
Query: 132  tg 133
            ||
Sbjct: 9675 tg 9674

---

>gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, complete sequence
          Length = 124050

 Score =  109 bits (55), Expect = 1e-20
 Identities = 82/91 (90%)
 Strand = Plus / Plus

                                                                         
Query: 220   actagcatggcaatgatagtaatggtatctagggaaatggtcatcttgcgtgtgatctcg 279
             |||||||||||||||||||||||| ||||| |||||||||||||||||| || ||||  |
Sbjct: 66340 actagcatggcaatgatagtaatgatatctggggaaatggtcatcttgcctgagatcctg 66399

                                            
Query: 280   cttggaagaagaacgaatccgtgaagcagac 310
             ||||||||||||| |  ||||||||||||||
Sbjct: 66400 cttggaagaagaatgcctccgtgaagcagac 66430



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 105/122 (86%), Gaps = 3/122 (2%)
 Strand = Plus / Plus

                                                                         
Query: 14    taatatggtgatataacaaggaact-atgttttcacatggaagcaaatgcacctacaact 72
             |||||||||||||| |||||||||  |||||| ||||||||||||| ||||||| |||||
Sbjct: 66133 taatatggtgatatgacaaggaacccatgttt-cacatggaagcaactgcacctgcaact 66191

                                                                         
Query: 73    atcaacactat-aagaaggttgagcaagtggtaacatagccaaatagtggtttgctaggt 131
             | |||| |||| || | |||  ||||||  |||||||||||||  |||||||||||||||
Sbjct: 66192 agcaacgctatcaacagggtgaagcaagcagtaacatagccaatcagtggtttgctaggt 66251

               
Query: 132   tg 133
             ||
Sbjct: 66252 tg 66253

---

>gb|AF474072.1| Hordeum vulgare sp. vulgare cultivar Morex BAC clone 773k14, complete
             sequence
          Length = 113510

 Score =  107 bits (54), Expect = 5e-20
 Identities = 69/74 (93%)
 Strand = Plus / Plus

                                                                         
Query: 219   aactagcatggcaatgatagtaatggtatctagggaaatggtcatcttgcgtgtgatctc 278
             ||||||||||||||||||||||||||||||| |||||||| ||||||||| || |||| |
Sbjct: 17868 aactagcatggcaatgatagtaatggtatctggggaaatgatcatcttgcctgagatccc 17927

                           
Query: 279   gcttggaagaagaa 292
             ||||||||||||||
Sbjct: 17928 gcttggaagaagaa 17941



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 100/119 (84%), Gaps = 1/119 (0%)
 Strand = Plus / Plus

                                                                         
Query: 14    taatatggtgatataacaaggaact-atgttttcacatggaagcaaatgcacctacaact 72
             |||||||||||||| |||||| ||  |||||||||||||||||||  |||| || |||||
Sbjct: 17662 taatatggtgatatgacaagggacccatgttttcacatggaagcatctgcaactgcaact 17721

                                                                        
Query: 73    atcaacactataagaaggttgagcaagtggtaacatagccaaatagtggtttgctaggt 131
             | |||| |||  | | |||  |||||| ||||||||||||||  |||||||||||||||
Sbjct: 17722 agcaacgctaacacagggtaaagcaagcggtaacatagccaatcagtggtttgctaggt 17780

---

>gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones BAC 799C8 and 122A5 hardness
            locus region
          Length = 160897

 Score =  101 bits (51), Expect = 3e-18
 Identities = 81/91 (89%)
 Strand = Plus / Plus

                                                                        
Query: 220  actagcatggcaatgatagtaatggtatctagggaaatggtcatcttgcgtgtgatctcg 279
            ||||||||||| |||||||||||||||||| |||||||| || |||||| || |||| ||
Sbjct: 4810 actagcatggcgatgatagtaatggtatctggggaaatgatcctcttgcctgagatcccg 4869

                                           
Query: 280  cttggaagaagaacgaatccgtgaagcagac 310
            ||||||||||||| |  ||||||||||||||
Sbjct: 4870 cttggaagaagaatgcctccgtgaagcagac 4900



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 105/122 (86%), Gaps = 4/122 (3%)
 Strand = Plus / Plus

                                                                        
Query: 14   taatatggtgatataacaaggaact-atgttttcacatggaagcaaatgcacctacaact 72
            ||||||||||||||||||||||||  ||| |||  ||||||||||| ||| ||| |||||
Sbjct: 4604 taatatggtgatataacaaggaacccatgctttg-catggaagcaactgc-cctgcaact 4661

                                                                        
Query: 73   atcaacactat-aagaaggttgagcaagtggtaacatagccaaatagtggtttgctaggt 131
            | |||| |||| || | |||| ||||||  |||||||||||||| |||||||||||||||
Sbjct: 4662 agcaacgctatcaacagggttaagcaagcagtaacatagccaaacagtggtttgctaggt 4721

              
Query: 132  tg 133
            ||
Sbjct: 4722 tg 4723

---

>gb|AF326781.1| Triticum monococcum actin (ACT-1) gene, partial cds; putative chromosome
              condensation factor (CCF), putative resistance protein
              (RGA-2), putative resistance protein (RGA2) and putative
              nodulin-like-like protein (NLL) gene, complete cds; and
              retrotransposons Josephine, Angela-2, Angela-4, Heidi,
              Greti, Angela-3, Fatima, Erika-1, Angela-6, Angela-5,
              Barbara, Isabelle, Erika-2, and Claudia
          Length = 211009

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 68/83 (81%)
 Strand = Plus / Plus

                                                                          
Query: 256    atggtcatcttgcgtgtgatctcgcttggaagaagaacgaatccgtgaagcagacaaaac 315
              ||||||||||||| ||  ||| |||  ||||||||||||| ||| ||||| |||||||  
Sbjct: 194891 atggtcatcttgcctgaaatcccgcaaggaagaagaacgagtccatgaagtagacaaacg 194950

                                     
Query: 316    aacatagtcgagcgaatcctcac 338
               || ||||||| || ||||||||
Sbjct: 194951 gacgtagtcgaacggatcctcac 194973

---

>gb|AY663392.1| Triticum aestivum cultivar Renan clone BAC 930H14, complete sequence
          Length = 153766

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                       
Query: 256   atggtcatcttgcgtgtgatctcgcttggaagaagaacgaatccgtgaagcagacaaa 313
             ||||||||||||| ||  ||| |||  ||||||||||||| ||| ||||| |||||||
Sbjct: 73429 atggtcatcttgcctgaaatcccgcaaggaagaagaacgagtccatgaagtagacaaa 73372

---

>gb|AC155829.5| Mus musculus 10 BAC RP24-534E16 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 191442

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 602    gctgctcctacagaaagagagg 623
              ||||||||||||||||||||||
Sbjct: 119759 gctgctcctacagaaagagagg 119780

---

>gb|AY188331.1| Triticum monococcum DV92 chromosome 5AL BAC 231A16, complete sequence
          Length = 133625

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 49/58 (84%)
 Strand = Plus / Plus

                                                                       
Query: 256   atggtcatcttgcgtgtgatctcgcttggaagaagaacgaatccgtgaagcagacaaa 313
             ||||||||||||| ||  ||| |||  ||||||||||||| ||| ||||| |||||||
Sbjct: 85789 atggtcatcttgcctgaaatcccgcaaggaagaagaacgagtccatgaagaagacaaa 85846



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 61/72 (84%), Gaps = 3/72 (4%)
 Strand = Plus / Plus

                                                                          
Query: 62     cacctacaactatcaacactataagaaggt--tgagcaa-gtggtaacatagccaaatag 118
              ||||| |||||| |||| |||||||||||   ||||||| | ||||||||||||||  | 
Sbjct: 105871 cacctgcaactaacaacgctataagaaggggctgagcaaagcggtaacatagccaatcaa 105930

                          
Query: 119    tggtttgctagg 130
              ||||||||||||
Sbjct: 105931 tggtttgctagg 105942

---

>gb|AC107746.9| Mus musculus chromosome 1, clone RP23-311K2, complete sequence
          Length = 202822

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 187   taggaagcaaggcatagcggaagaaa 212
             |||||||||||||||||| |||||||
Sbjct: 35979 taggaagcaaggcatagcagaagaaa 35954

---

>gb|AY485644.1| Triticum monococcum phosphatidylserine decarboxylase, ZCCT2, ZCCT1, and
             SNF2P genes, complete cds; nucellin pseudogene, complete
             sequence; putative transposase, phosphatidylinositol
             phosphatidylcholine transfer protein sec14 cytosolic-like
             protein, and phytochrome P450-like protein genes, complete
             cds; and unknown genes
          Length = 438828

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 61/72 (84%), Gaps = 3/72 (4%)
 Strand = Plus / Minus

                                                                         
Query: 62    cacctacaactatcaacactataagaaggt--tgagcaa-gtggtaacatagccaaatag 118
             ||||| |||||| |||| |||||||||||   ||||||| | ||||||||||||||  | 
Sbjct: 65524 cacctgcaactagcaacgctataagaaggggctgagcaaagcggtaacatagccaatcaa 65465

                         
Query: 119   tggtttgctagg 130
             ||||||||||||
Sbjct: 65464 tggtttgctagg 65453

---

>emb|AL590093.10| Human DNA sequence from clone RP11-240D10 on chromosome 1 Contains the
             3' end of the THEA gene for thioesterase (adipose
             associated), a novel gene (MGC27169), a novel gene and the
             5' end of a novel gene (FLJ46354), complete sequence
          Length = 62485

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 613   agaaagagagggagagcatgggagg 637
             |||||||||||||||||| ||||||
Sbjct: 48677 agaaagagagggagagcaggggagg 48653

---

>gb|DP000040.1| Otolemur garnettii target 106 genomic scaffold
          Length = 277620

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 613   agaaagagagggagagcatgg 633
             |||||||||||||||||||||
Sbjct: 17006 agaaagagagggagagcatgg 16986

---

>emb|BX539336.7| Zebrafish DNA sequence from clone CH211-128H21 in linkage group 23,
              complete sequence
          Length = 183357

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 613    agaaagagagggagagcatgggagg 637
              ||||||||||||||||||| |||||
Sbjct: 112086 agaaagagagggagagcataggagg 112062

---

>gb|AC011736.4|AC011736 Homo sapiens BAC clone CTD-2331A14 from 1, complete sequence
          Length = 122146

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 613   agaaagagagggagagcatgggagg 637
             |||||||||||||||||| ||||||
Sbjct: 45048 agaaagagagggagagcaggggagg 45072

---

>gb|AY105889.1| Zea mays PCO106909 mRNA sequence
          Length = 1420

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 583 ggctcccatggcggctgctgctgct 607
           |||| ||||||||||||||||||||
Sbjct: 56  ggcttccatggcggctgctgctgct 32

---

>ref|XM_517875.1| PREDICTED: Pan troglodytes similar to Adenomatous polyposis coli
           protein (APC protein) (LOC461998), mRNA
          Length = 577

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 566 ggacccgagcccagggaggc 585
           ||||||||||||||||||||
Sbjct: 151 ggacccgagcccagggaggc 132

---

>ref|XM_479184.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1000

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 588 ccatggcggctgctgctgct 607
           ||||||||||||||||||||
Sbjct: 63  ccatggcggctgctgctgct 44

---

>ref|XM_506479.1| PREDICTED Oryza sativa (japonica cultivar-group), P0594D10.123 mRNA
          Length = 1055

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 588 ccatggcggctgctgctgct 607
           ||||||||||||||||||||
Sbjct: 125 ccatggcggctgctgctgct 106

---

>gb|CP000081.1| Leishmania major chromosome 35, complete sequence
          Length = 2090491

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 439    caggagcagagcgcggcggc 458
              ||||||||||||||||||||
Sbjct: 563251 caggagcagagcgcggcggc 563270

---

>gb|CP000066.1| Trypanosoma brucei chromosome 3, complete sequence
          Length = 1653225

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 596    gctgctgctgctcctacagaaaga 619
              ||||||||||||||| ||||||||
Sbjct: 596913 gctgctgctgctcctccagaaaga 596890

---

>gb|AC091330.18| Trypanosoma brucei chromosome 3 clone RPCI93-48O8, complete sequence
          Length = 138368

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 596    gctgctgctgctcctacagaaaga 619
              ||||||||||||||| ||||||||
Sbjct: 106245 gctgctgctgctcctccagaaaga 106268

---

>gb|AC093439.2| Drosophila melanogaster clone BACR28A12, complete sequence
          Length = 186444

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 588   ccatggcggctgctgctgct 607
             ||||||||||||||||||||
Sbjct: 69945 ccatggcggctgctgctgct 69964

---

>gb|AC140205.2| Mus musculus BAC clone RP24-344F2 from chromosome 8, complete sequence
          Length = 140215

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 595   ggctgctgctgctcctacag 614
             ||||||||||||||||||||
Sbjct: 11607 ggctgctgctgctcctacag 11588

---

>gb|BC098089.1| Xenopus tropicalis hypothetical protein mgc107988, mRNA (cDNA clone
            MGC:107988 IMAGE:6998135), complete cds
          Length = 2640

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 89   ggttgagcaagtggtaacat 108
            ||||||||||||||||||||
Sbjct: 2351 ggttgagcaagtggtaacat 2370

---

>ref|NM_001032336.1| Xenopus tropicalis hypothetical protein mgc107988 (mgc107988), mRNA
          Length = 2640

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 89   ggttgagcaagtggtaacat 108
            ||||||||||||||||||||
Sbjct: 2351 ggttgagcaagtggtaacat 2370

---

>gb|AC073345.11| Homo sapiens BAC clone RP11-630O5 from 7, complete sequence
          Length = 144834

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 209  gaaacaagataactagcatggcaa 232
            |||||||||||||| |||||||||
Sbjct: 3037 gaaacaagataactggcatggcaa 3014

---

>gb|AC006004.2| Homo sapiens PAC clone RP4-803F10 from 7, complete sequence
          Length = 103530

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 16    atatggtgatataacaaggaacta 39
             ||||||||||| ||||||||||||
Sbjct: 44706 atatggtgatacaacaaggaacta 44729

---

>gb|AC145906.2| Pan troglodytes BAC clone RP43-9J5 from 7, complete sequence
          Length = 220120

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 209    gaaacaagataactagcatggcaa 232
              |||||||||||||| |||||||||
Sbjct: 107291 gaaacaagataactggcatggcaa 107314

---

>gb|AE014304.1| Homo sapiens chromosome 13q34 schizophrenia region contig 1 section 1
             of 11 of the complete sequence
          Length = 250029

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 613   agaaagagagggagagcatg 632
             ||||||||||||||||||||
Sbjct: 56696 agaaagagagggagagcatg 56677

---

>gb|AC161189.11| Mus musculus chromosome 8, clone RP23-337N9, complete sequence
          Length = 186769

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 595    ggctgctgctgctcctacag 614
              ||||||||||||||||||||
Sbjct: 145017 ggctgctgctgctcctacag 144998

---

>gb|AC146207.3| Pan troglodytes BAC clone RP43-25M19 from 7, complete sequence
          Length = 179594

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 16    atatggtgatataacaaggaacta 39
             |||||||||||||||||| |||||
Sbjct: 22659 atatggtgatataacaagaaacta 22682

---

>gb|AF390525.1| Eucalyptus curtisii 18S ribosomal RNA gene, partial sequence;
           internal transcribed spacer 1, 5.8S ribosomal RNA gene,
           internal transcribed spacer 2, and 26S ribosomal RNA
           gene, complete sequence
          Length = 632

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 507 gggcgagcggggcttgggcg 526
           ||||||||||||||||||||
Sbjct: 449 gggcgagcggggcttgggcg 468

---

>gb|AF390524.1| Eucalyptus curtisii 18S ribosomal RNA gene, partial sequence;
           internal transcribed spacer 1, 5.8S ribosomal RNA gene,
           internal transcribed spacer 2, and 26S ribosomal RNA
           gene, complete sequence
          Length = 632

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 507 gggcgagcggggcttgggcg 526
           ||||||||||||||||||||
Sbjct: 449 gggcgagcggggcttgggcg 468

---

>emb|AL512484.13| Human DNA sequence from clone RP11-26A3 on chromosome 13, complete
              sequence
          Length = 124446

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 614    gaaagagagggagagcatgg 633
              ||||||||||||||||||||
Sbjct: 113097 gaaagagagggagagcatgg 113078

---

>emb|AL359091.10| Human DNA sequence from clone RP11-339B21 on chromosome 9 Contains a
              novel gene (FLJ21673), novel gene (CLONE24922), the COQ4
              gene for coenzyme Q4 homolog (yeast), a novel gene similar
              to thymosin, beta 4, X chromosome (TMSB4X0), the SLC27A4
              gene for solute carrier family 27 (fatty acid transporter),
              member 4 (FATP4), a novel gene (2GC2668), the gene for
              cerebral cell adhesion molecule (CerCAM), a pseudogene
              similar to part of a novel gene (FLJ36874), the 5' end of
              the ODF2 gene for outer dense fiber of sperm tails 2
              (ODF84, ODF2/1, ODF2/2, MGC9034) and six CpG islands,
              complete sequence
          Length = 184444

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 367    ggtttcaaaccccaaacccc 386
              ||||||||||||||||||||
Sbjct: 109574 ggtttcaaaccccaaacccc 109593

---

>emb|AL158062.22| Human DNA sequence from clone RP11-144H23 on chromosome 13 Contains the
              5' end of the gene for a novel protein similar to ubiquitin
              specific protease 12 (LOC219333), a novel gene, the 5' end
              of a novel gene and a CpG island, complete sequence
          Length = 105880

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 485    ggcgcgcaggcggggagaacgggggcgagcgg 516
              |||||||||||||||||  |||||| ||||||
Sbjct: 102081 ggcgcgcaggcggggagcgcgggggtgagcgg 102050

---

>emb|AL161771.17| Human DNA sequence from clone RP11-11L8 on chromosome 13 Contains the
             SLC10A2 gene for solute carrier family 10 (sodium/bile
             acid cotransporter family, member 2, complete sequence
          Length = 171132

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 613   agaaagagagggagagcatg 632
             ||||||||||||||||||||
Sbjct: 37875 agaaagagagggagagcatg 37856

---

>gb|AC162382.8| Mus musculus 6 BAC RP24-398M13 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 200253

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 609   ctacagaaagagagggagag 628
             ||||||||||||||||||||
Sbjct: 41829 ctacagaaagagagggagag 41848

---

>emb|AL596086.9| Mouse DNA sequence from clone RP23-168C20 on chromosome 11 Contains the
             3' end of the Tex14 gene for testis expressed gene 14,
             complete sequence
          Length = 200501

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 251   gggaaatggtcatcttgcgtgtga 274
             |||||||||||| |||||||||||
Sbjct: 46159 gggaaatggtcaccttgcgtgtga 46136

---

>gb|AC109473.2| Homo sapiens chromosome 5 clone RP11-3B10, complete sequence
          Length = 170363

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 566   ggacccgagcccagggaggc 585
             ||||||||||||||||||||
Sbjct: 91090 ggacccgagcccagggaggc 91109

---

>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 450     cgcggcggcacggctcgacg 469
               ||||||||||||||||||||
Sbjct: 4989987 cgcggcggcacggctcgacg 4990006

---

>gb|AY951944.1| Triticum monococcum TmBAC 21C6 FR-Am2 locus, genomic sequence
          Length = 190469

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                    
Query: 283  ggaagaagaacgaatccgtgaagcagacaaaacaacatagtcgagcgaatcctcac 338
            ||||||||||||| ||| ||||| |||||||   |  ||||||| |||||||||||
Sbjct: 1165 ggaagaagaacgagtccatgaagaagacaaacagatgtagtcgaacgaatcctcac 1220

---

>gb|AC020750.4| Homo sapiens chromosome 3 clone RP11-105H19 map 3p, complete sequence
          Length = 156933

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 613   agaaagagagggagagcatgggag 636
             |||||||||||||||| |||||||
Sbjct: 26585 agaaagagagggagagtatgggag 26562

---

>gb|AC115695.11| Mus musculus chromosome 5, clone RP24-229D18, complete sequence
          Length = 161430

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 618   gagagggagagcatgggaggttagagagcaga 649
             ||||||||| |||||||||||| | |||||||
Sbjct: 87121 gagagggagggcatgggaggttggtgagcaga 87152

---

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 588      ccatggcggctgctgctgct 607
                ||||||||||||||||||||
Sbjct: 25624334 ccatggcggctgctgctgct 25624315

---

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 589     catggcggctgctgctgctc 608
               ||||||||||||||||||||
Sbjct: 1749064 catggcggctgctgctgctc 1749083

---

>gb|AC007711.9|AC007711 Drosophila melanogaster, chromosome 3R, region 92B-92B, BAC clone
              BACR02O09, complete sequence
          Length = 155751

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 593    gcggctgctgctgctcctac 612
              ||||||||||||||||||||
Sbjct: 105959 gcggctgctgctgctcctac 105940

---

>gb|AC148299.3| Pan troglodytes BAC clone CH251-484A18 from chromosome 7, complete
             sequence
          Length = 167933

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 175   acatttaagtggtaggaagc 194
             ||||||||||||||||||||
Sbjct: 32720 acatttaagtggtaggaagc 32739

---

>gb|AY205563.1| Chlamydomonas reinhardtii genomic sequence
          Length = 7479

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 587  cccatggcggctgctgctgctcct 610
            |||||||| |||||||||||||||
Sbjct: 6832 cccatggctgctgctgctgctcct 6855

---

>dbj|AP004380.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0594D10
          Length = 143200

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 588   ccatggcggctgctgctgct 607
             ||||||||||||||||||||
Sbjct: 78307 ccatggcggctgctgctgct 78288

---

>dbj|AP002526.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0504H10
          Length = 143515

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 589   catggcggctgctgctgctc 608
             ||||||||||||||||||||
Sbjct: 91407 catggcggctgctgctgctc 91426

---

>dbj|AK071567.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023100G12, full
           insert sequence
          Length = 1055

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 588 ccatggcggctgctgctgct 607
           ||||||||||||||||||||
Sbjct: 125 ccatggcggctgctgctgct 106

---

>dbj|AK059824.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-E06, full
           insert sequence
          Length = 1000

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 588 ccatggcggctgctgctgct 607
           ||||||||||||||||||||
Sbjct: 63  ccatggcggctgctgctgct 44

---

>emb|BX470120.5| Zebrafish DNA sequence from clone CH211-11I16 in linkage group 7,
             complete sequence
          Length = 164968

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 227   tggcaatgatagtaatggta 246
             ||||||||||||||||||||
Sbjct: 95121 tggcaatgatagtaatggta 95140

---

>gb|AC006312.8|AC006312 Homo sapiens chromosome 9, clone  hRPK.401_G_18, complete sequence
          Length = 207656

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 367   ggtttcaaaccccaaacccc 386
             ||||||||||||||||||||
Sbjct: 34479 ggtttcaaaccccaaacccc 34460

---

>gb|AE003728.3| Drosophila melanogaster chromosome 3R, section 66 of 118 of the
             complete sequence
          Length = 232094

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 593   gcggctgctgctgctcctac 612
             ||||||||||||||||||||
Sbjct: 52706 gcggctgctgctgctcctac 52687

---

>gb|AE003636.4| Drosophila melanogaster chromosome 2L, section 45 of 83 of the complete
              sequence
          Length = 246231

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 588    ccatggcggctgctgctgct 607
              ||||||||||||||||||||
Sbjct: 204545 ccatggcggctgctgctgct 204564

---

>gb|AC006470.1|AC006470 Drosophila melanogaster, chromosome 2R, region 33F1-33F2, P1 clones
             DS06792 and DS03749, complete sequence
          Length = 112972

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 588   ccatggcggctgctgctgct 607
             ||||||||||||||||||||
Sbjct: 23628 ccatggcggctgctgctgct 23647

---

>gb|AC110192.14| Mus musculus chromosome 7, clone RP23-227K15, complete sequence
          Length = 181287

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 640   agagagcagaaagggagaaa 659
             ||||||||||||||||||||
Sbjct: 54931 agagagcagaaagggagaaa 54912

---

>dbj|D13981.1|HUMAPC2 Homo sapiens gene for APC, exon 1B
          Length = 586

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 566 ggacccgagcccagggaggc 585
           ||||||||||||||||||||
Sbjct: 431 ggacccgagcccagggaggc 412

---

>emb|AL844881.5| Mouse DNA sequence from clone RP23-244B19 on chromosome 2, complete
              sequence
          Length = 219340

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 113    aaatagtggtttgctaggtt 132
              ||||||||||||||||||||
Sbjct: 204757 aaatagtggtttgctaggtt 204776

---

>gb|AC136500.1| Homo sapiens chromosome 5 clone RP11-56P2, complete sequence
          Length = 183967

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 566   ggacccgagcccagggaggc 585
             ||||||||||||||||||||
Sbjct: 81261 ggacccgagcccagggaggc 81280


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,819,595
Number of Sequences: 3902068
Number of extensions: 5819595
Number of successful extensions: 134555
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 134109
Number of HSP's gapped (non-prelim): 404
length of query: 660
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 637
effective length of database: 17,143,297,704
effective search space: 10920280637448
effective search space used: 10920280637448
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---