ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal4p23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1G6PI_CAMJE (Q9PMD4) Probable glucose-6-phosphate isomerase (EC 5... 29 2.9
2UBE3C_MOUSE (Q80U95) Ubiquitin-protein ligase E3C (EC 6.3.2.-) 29 3.8

>G6PI_CAMJE (Q9PMD4) Probable glucose-6-phosphate isomerase (EC 5.3.1.9) (GPI)|
           (Phosphoglucose isomerase) (PGI) (Phosphohexose
           isomerase) (PHI)
          Length = 406

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = -2

Query: 207 SLCNKI---ELISYYLPSCMHAWISPDTPICLCSNELLDAWFAPVIM 76
           SL NK+   EL++    + MHA I+ +  + +   E LDAW A  +M
Sbjct: 323 SLSNKVNLHELLNAQCDATMHALIAENLSVDVIELEKLDAWHAGYLM 369



to top

>UBE3C_MOUSE (Q80U95) Ubiquitin-protein ligase E3C (EC 6.3.2.-)|
          Length = 1083

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 42  YLTVQKGSNSKTLLLEQTMHRAIHSSTNKSVYLAIS 149
           YL V + S+    ++EQ +H  +HS   +S+YL I+
Sbjct: 181 YLPVLQDSSYVVSVIEQILHYMVHSGYYRSLYLLIN 216


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,312,895
Number of Sequences: 219361
Number of extensions: 537982
Number of successful extensions: 1427
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1427
length of database: 80,573,946
effective HSP length: 48
effective length of database: 70,044,618
effective search space used: 1681070832
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top