>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                                    
Query: 609      tcgaggtgaaggctgtaccagaggagcaccgggacaacctccggcatgcaga 660
                ||||||||||||||| ||||||| ||| ||||||||| |||||||| |||||
Sbjct: 13564239 tcgaggtgaaggctggaccagagaagcgccgggacaagctccggcacgcaga 13564188

>dbj|AP003329.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1045F02
          Length = 215378

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                                  
Query: 609    tcgaggtgaaggctgtaccagaggagcaccgggacaacctccggcatgcaga 660
              ||||||||||||||| ||||||| ||| ||||||||| |||||||| |||||
Sbjct: 118199 tcgaggtgaaggctggaccagagaagcgccgggacaagctccggcacgcaga 118148

>emb|AL442067.16| Human DNA sequence from clone RP11-128N14 on chromosome 13 Contains the
             3' end of the gene for muscleblind-like protein (MBLL39),
             the RAP2A gene for a member of the RAS oncogene family and
             a CpG island, complete sequence
          Length = 150297

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 164   aaaaaatatacacagtaattact 186
             |||||||||||||||||||||||
Sbjct: 75802 aaaaaatatacacagtaattact 75824

>gb|AY228794.1| Haematopus ater recombination activating protein 1 (RAG-1) gene,
            partial cds
          Length = 2871

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 469  accaggagagcccagaaacatc 490
            ||||||||||||||||||||||
Sbjct: 1105 accaggagagcccagaaacatc 1126

>gb|AY339111.1| Haematopus ostralegus recombination activating protein gene,
           partial cds
          Length = 930

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 469 accaggagagcccagaaacatc 490
           ||||||||||||||||||||||
Sbjct: 148 accaggagagcccagaaacatc 169

>ref|XM_483126.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1527

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 268 accatagcagcagcagcaatgccgc 292
           |||| ||||||||||||||||||||
Sbjct: 199 accacagcagcagcagcaatgccgc 223

>gb|AF400982.1| Syrrhopodon armatus isolate G438 glyceraldehyde 3-phosphate
           dehydrogenase gene, partial cds
          Length = 913

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 331 cggaggaaaccacatcgtcct 351
           |||||||||||||||||||||
Sbjct: 829 cggaggaaaccacatcgtcct 809

>gb|AF400981.1| Syrrhopodon fimbriatulus isolate G247 glyceraldehyde 3-phosphate
           dehydrogenase gene, partial cds
          Length = 910

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 331 cggaggaaaccacatcgtcct 351
           |||||||||||||||||||||
Sbjct: 838 cggaggaaaccacatcgtcct 818

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 268      accatagcagcagcagcaatgccgc 292
                |||| ||||||||||||||||||||
Sbjct: 24393638 accacagcagcagcagcaatgccgc 24393614

>dbj|AP005148.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
            clone:B1142B04
          Length = 161964

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 268  accatagcagcagcagcaatgccgc 292
            |||| ||||||||||||||||||||
Sbjct: 9354 accacagcagcagcagcaatgccgc 9330

>dbj|AP004762.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0686H11
          Length = 135273

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 268    accatagcagcagcagcaatgccgc 292
              |||| ||||||||||||||||||||
Sbjct: 133942 accacagcagcagcagcaatgccgc 133918

>dbj|AK066150.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013058G19, full
           insert sequence
          Length = 1527

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 268 accatagcagcagcagcaatgccgc 292
           |||| ||||||||||||||||||||
Sbjct: 199 accacagcagcagcagcaatgccgc 223

>gb|CP000066.1| Trypanosoma brucei chromosome 3, complete sequence
          Length = 1653225

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 269     ccatagcagcagcagcaatg 288
               ||||||||||||||||||||
Sbjct: 1097963 ccatagcagcagcagcaatg 1097982

>gb|AC159430.1| Trypanosoma brucei chromosome 3 clone RPCI93-28C22, complete sequence
          Length = 142068

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 269   ccatagcagcagcagcaatg 288
             ||||||||||||||||||||
Sbjct: 49614 ccatagcagcagcagcaatg 49595

>gb|AC149631.3| Rhinolophus ferrumequinum clone VMRC7-80B12, complete sequence
          Length = 142320

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 436    ctgagaccccacatgacacc 455
              ||||||||||||||||||||
Sbjct: 109080 ctgagaccccacatgacacc 109061

>ref|XM_819215.1| Trypanosoma brucei TREU927 clone RPCI93-28C22 hypothetical protein
           (Tb927.3.3940) partial mRNA
          Length = 1782

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 269 ccatagcagcagcagcaatg 288
           ||||||||||||||||||||
Sbjct: 282 ccatagcagcagcagcaatg 301

>gb|AC127568.4| Mus musculus BAC clone RP24-215P13 from chromosome 10, complete sequence
          Length = 206192

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 233    tgctgtctccagaccaagtc 252
              ||||||||||||||||||||
Sbjct: 177899 tgctgtctccagaccaagtc 177918

>gb|AC122829.4| Mus musculus BAC clone RP23-224F12 from 10, complete sequence
          Length = 155915

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 233    tgctgtctccagaccaagtc 252
              ||||||||||||||||||||
Sbjct: 145782 tgctgtctccagaccaagtc 145763

>gb|AC116685.9| Mus musculus chromosome 1, clone RP23-304F24, complete sequence
          Length = 173726

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 179   taattactatatatactaga 198
             ||||||||||||||||||||
Sbjct: 65903 taattactatatatactaga 65922

>emb|AL021026.1|HS127D3 Human DNA sequence from clone RP1-127D3 on chromosome 1q23-25 Contains
              the FMO3 gene for flavin containing monooxygenase 3, a
              novel flavin containing monooxygenase, the FMO2 gene for
              flavin containing monooxygenase 2, the 3' end of a novel
              gene, a novel gene and the 5' end of the FMO1 gene for
              flavin containing monooxygenase 1, complete sequence
          Length = 162075

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 171    atacacagtaattactatatatac 194
              |||||||||| |||||||||||||
Sbjct: 159619 atacacagtatttactatatatac 159642

>emb|AL606655.3|OSJN00103 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0040D15,
             complete sequence
          Length = 130618

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 341   cacatcgtccttgctgctgc 360
             ||||||||||||||||||||
Sbjct: 99714 cacatcgtccttgctgctgc 99733

>gb|AY091013.1| Arabidopsis thaliana unknown protein (At1g03580) mRNA, partial cds
          Length = 907

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 518 aggagctactaccagtgtac 537
           ||||||||||||||||||||
Sbjct: 475 aggagctactaccagtgtac 494

>emb|CR354543.13| Zebrafish DNA sequence from clone DKEY-14M15 in linkage group 13,
              complete sequence
          Length = 140709

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 142    tccttttctggatgatatgg 161
              ||||||||||||||||||||
Sbjct: 129262 tccttttctggatgatatgg 129281

>emb|BX537143.5| Zebrafish DNA sequence from clone CH211-86H15 in linkage group 11,
              complete sequence
          Length = 204606

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 162    acaaaaaatatacacagtaa 181
              ||||||||||||||||||||
Sbjct: 117660 acaaaaaatatacacagtaa 117679

>emb|BX682548.7| Zebrafish DNA sequence from clone DKEY-94A14 in linkage group 2,
             complete sequence
          Length = 111741

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 566   cttcattttgacgacgctga 585
             ||||||||||||||||||||
Sbjct: 35523 cttcattttgacgacgctga 35542

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 614      gtgaaggctgtaccagaggagcac 637
                |||||||||||||| |||||||||
Sbjct: 20257864 gtgaaggctgtacctgaggagcac 20257841



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 341     cacatcgtccttgctgctgc 360
               ||||||||||||||||||||
Sbjct: 3633422 cacatcgtccttgctgctgc 3633441

>gb|DP000028.1| Rhinolophus ferrumequinum target 1 genomic scaffold
          Length = 1756392

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 436     ctgagaccccacatgacacc 455
               ||||||||||||||||||||
Sbjct: 1596427 ctgagaccccacatgacacc 1596408

>gb|AC007390.4| Homo sapiens BAC clone RP11-423P10 from 2, complete sequence
          Length = 131011

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 41   ctaaaagagctaatgcaaatctaa 64
            ||||||||||||||||||| ||||
Sbjct: 2396 ctaaaagagctaatgcaaagctaa 2373

>gb|AC002560.2|AC002560 Genomic sequence for Arabidopsis thaliana BAC F21B7 from chromosome I,
             complete sequence
          Length = 101176

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 518   aggagctactaccagtgtac 537
             ||||||||||||||||||||
Sbjct: 57450 aggagctactaccagtgtac 57469

>dbj|BA000001.2| Pyrococcus horikoshii OT3 DNA, complete genome
          Length = 1738505

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 488    atccatggagttcaccatgt 507
              ||||||||||||||||||||
Sbjct: 483463 atccatggagttcaccatgt 483444

>dbj|AK100687.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114A21, full
           insert sequence
          Length = 1335

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 614 gtgaaggctgtaccagaggagcac 637
           |||||||||||||| |||||||||
Sbjct: 583 gtgaaggctgtacctgaggagcac 606


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,031,339
Number of Sequences: 3902068
Number of extensions: 6031339
Number of successful extensions: 192329
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 192061
Number of HSP's gapped (non-prelim): 268
length of query: 663
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 640
effective length of database: 17,143,297,704
effective search space: 10971710530560
effective search space used: 10971710530560
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)