ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal5e19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_197364.1| Oryza sativa (japonica cultivar-group) putative... 178 1e-41
2dbj|AK120676.1| Oryza sativa (japonica cultivar-group) cDNA clon... 178 1e-41
3gb|AC025296.10| Oryza sativa chromosome 10 BAC OSJNBa0076F20 gen... 111 3e-21
4dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 111 3e-21
5gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 111 3e-21
6gb|AY105273.1| Zea mays PCO080549 mRNA sequence 64 6e-07
7gb|AC154223.1| Mus musculus BAC clone RP24-138G21 from chromosom... 44 0.55
8emb|CT010447.23| Mouse DNA sequence from clone RP23-15K11 on chr... 44 0.55
9gb|AC102499.10| Mus musculus chromosome 1, clone RP24-151M13, co... 42 2.2
10gb|AC113050.9| Mus musculus chromosome 1, clone RP23-250O14, com... 42 2.2
11gb|AC018712.5| Homo sapiens BAC clone RP11-343H10 from 2, comple... 42 2.2
12emb|BX649607.1| Aspergillus fumigatus BAC pilot project supercon... 42 2.2
13gb|AC119427.3| Homo sapiens chromosome 1 clone RP11-27G14, compl... 42 2.2
14gb|AC125061.3| Mus musculus BAC clone RP23-418E13 from 5, comple... 42 2.2
15emb|CT030724.7| Mouse DNA sequence from clone RP24-63K13 on chro... 42 2.2
16emb|AL845492.10| Mouse DNA sequence from clone RP23-222P7 on chr... 42 2.2
17gb|AC160635.2| Mus musculus BAC clone RP23-396N20 from chromosom... 42 2.2
18ref|NM_124738.2| Arabidopsis thaliana aldo-keto reductase/ oxido... 40 8.6
19gb|AC110559.11| Mus musculus chromosome 7, clone RP23-253E12, co... 40 8.6
20gb|BT012653.1| Arabidopsis thaliana At5g53580 gene, complete cds 40 8.6
21dbj|AK127503.1| Homo sapiens cDNA FLJ45596 fis, clone BRTHA3017791 40 8.6
22gb|AC117478.3| Homo sapiens 3 BAC RP11-598P12 (Roswell Park Canc... 40 8.6
23gb|AC158315.9| Mus musculus chromosome 7, clone RP23-146D22, com... 40 8.6
24dbj|AK221481.1| Arabidopsis thaliana mRNA for aldo/keto reductas... 40 8.6
25gb|AC005154.1| Homo sapiens PAC clone RP4-777O23 from 7, complet... 40 8.6
26emb|BX830085.1|CNS0A1A6 Arabidopsis thaliana Full-length cDNA Co... 40 8.6
27gb|AC013726.7| Homo sapiens BAC clone RP11-400N9 from 2, complet... 40 8.6
28gb|AC091719.3| Pan troglodytes clone RP43-26K2, complete sequence 40 8.6
29gb|AC010913.9| Homo sapiens BAC clone RP11-44N22 from 2, complet... 40 8.6
30gb|BC112202.1| Homo sapiens F-box protein 41, mRNA (cDNA clone I... 40 8.6
31gb|AC091530.4| Papio anubis clone RP41-444A14, complete sequence 40 8.6
32gb|AC153918.4| Mus musculus BAC RP23-89M16 (Roswell Park Cancer... 40 8.6
33dbj|AB015476.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 8.6
34emb|AL683847.12| Mouse DNA sequence from clone RP23-109A3 on chr... 40 8.6
35dbj|AB075820.1| Homo sapiens mRNA for KIAA1940 protein 40 8.6 
>ref|NM_197364.1| Oryza sativa (japonica cultivar-group) putative aldo/keto reductase
            (OSJNBa0076F20.16), mRNA
          Length = 1128

 Score =  178 bits (90), Expect = 1e-41
 Identities = 240/290 (82%)
 Strand = Plus / Minus

                                                                        
Query: 313  aatatgttctgaaccattttcttggggcactccatcgccgcggcttccagctctgagatc 372
            ||||||||||| |||||| |||| ||  ||||||| || || ||||| |||||||| |  
Sbjct: 1115 aatatgttctggaccattctcttcggagactccattgctgcagcttcgagctctgaaact 1056

                                                                        
Query: 373  tcaccagggctcagcctccagccaagcgcacccaagttgtcctccacgtgtctaactgtt 432
            ||| ||||||| ||||||||||| || || |||||||| ||||| ||||| || ||||||
Sbjct: 1055 tcagcagggctaagcctccagcccagtgctcccaagttatcctcgacgtgcctgactgtt 996

                                                                        
Query: 433  ttcacgccgggaatcggaattgcgcctttgcaaatgcaccagtttatagccacctgggac 492
            || || || ||||| ||||||| ||| ||||| |||||||| ||||| ||||| || |||
Sbjct: 995  ttgacacctggaataggaattgtgcccttgcagatgcaccaatttatggccacttgagac 936

                                                                        
Query: 493  atggttttgccctttcggtcggcaatactcttcaagcaagacagcagggactccagccca 552
            ||||| || ||||| |  || ||||| || ||||  |||| |||||| || |||| ||||
Sbjct: 935  atggtcttccccttcctttctgcaattcttttcagacaagtcagcagagattccaaccca 876

                                                              
Query: 553  ggaagaatctgccggaacaacacagatcttggcccatttggaaggttaga 602
            |||||||| ||||||||||||||||| ||||| ||| |||||||||||||
Sbjct: 875  ggaagaatttgccggaacaacacagaccttggtccacttggaaggttaga 826
to top
>dbj|AK120676.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013161O11, full
            insert sequence
          Length = 1407

 Score =  178 bits (90), Expect = 1e-41
 Identities = 240/290 (82%)
 Strand = Plus / Minus

                                                                        
Query: 313  aatatgttctgaaccattttcttggggcactccatcgccgcggcttccagctctgagatc 372
            ||||||||||| |||||| |||| ||  ||||||| || || ||||| |||||||| |  
Sbjct: 1203 aatatgttctggaccattctcttcggagactccattgctgcagcttcgagctctgaaact 1144

                                                                        
Query: 373  tcaccagggctcagcctccagccaagcgcacccaagttgtcctccacgtgtctaactgtt 432
            ||| ||||||| ||||||||||| || || |||||||| ||||| ||||| || ||||||
Sbjct: 1143 tcagcagggctaagcctccagcccagtgctcccaagttatcctcgacgtgcctgactgtt 1084

                                                                        
Query: 433  ttcacgccgggaatcggaattgcgcctttgcaaatgcaccagtttatagccacctgggac 492
            || || || ||||| ||||||| ||| ||||| |||||||| ||||| ||||| || |||
Sbjct: 1083 ttgacacctggaataggaattgtgcccttgcagatgcaccaatttatggccacttgagac 1024

                                                                        
Query: 493  atggttttgccctttcggtcggcaatactcttcaagcaagacagcagggactccagccca 552
            ||||| || ||||| |  || ||||| || ||||  |||| |||||| || |||| ||||
Sbjct: 1023 atggtcttccccttcctttctgcaattcttttcagacaagtcagcagagattccaaccca 964

                                                              
Query: 553  ggaagaatctgccggaacaacacagatcttggcccatttggaaggttaga 602
            |||||||| ||||||||||||||||| ||||| ||| |||||||||||||
Sbjct: 963  ggaagaatttgccggaacaacacagaccttggtccacttggaaggttaga 914
to top
>gb|AC025296.10| Oryza sativa chromosome 10 BAC OSJNBa0076F20 genomic sequence, complete
              sequence
          Length = 165394

 Score =  111 bits (56), Expect = 3e-21
 Identities = 146/176 (82%)
 Strand = Plus / Minus

                                                                          
Query: 313    aatatgttctgaaccattttcttggggcactccatcgccgcggcttccagctctgagatc 372
              ||||||||||| |||||| |||| ||  ||||||| || || ||||| |||||||| |  
Sbjct: 109680 aatatgttctggaccattctcttcggagactccattgctgcagcttcgagctctgaaact 109621

                                                                          
Query: 373    tcaccagggctcagcctccagccaagcgcacccaagttgtcctccacgtgtctaactgtt 432
              ||| ||||||| ||||||||||| || || |||||||| ||||| ||||| || ||||||
Sbjct: 109620 tcagcagggctaagcctccagcccagtgctcccaagttatcctcgacgtgcctgactgtt 109561

                                                                      
Query: 433    ttcacgccgggaatcggaattgcgcctttgcaaatgcaccagtttatagccacctg 488
              || || || ||||| ||||||| ||| ||||| |||||||| ||||| ||||||||
Sbjct: 109560 ttgacacctggaataggaattgtgcccttgcagatgcaccaatttatggccacctg 109505



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                                
Query: 529    caagacagcagggactccagcccaggaagaatctgccggaacaacacaga 578
              |||| |||||| || |||| |||||||||||| |||||||||||||||||
Sbjct: 109269 caagtcagcagagattccaacccaggaagaatttgccggaacaacacaga 109220
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  111 bits (56), Expect = 3e-21
 Identities = 146/176 (82%)
 Strand = Plus / Minus

                                                                            
Query: 313      aatatgttctgaaccattttcttggggcactccatcgccgcggcttccagctctgagatc 372
                ||||||||||| |||||| |||| ||  ||||||| || || ||||| |||||||| |  
Sbjct: 19481814 aatatgttctggaccattctcttcggagactccattgctgcagcttcgagctctgaaact 19481755

                                                                            
Query: 373      tcaccagggctcagcctccagccaagcgcacccaagttgtcctccacgtgtctaactgtt 432
                ||| ||||||| ||||||||||| || || |||||||| ||||| ||||| || ||||||
Sbjct: 19481754 tcagcagggctaagcctccagcccagtgctcccaagttatcctcgacgtgcctgactgtt 19481695

                                                                        
Query: 433      ttcacgccgggaatcggaattgcgcctttgcaaatgcaccagtttatagccacctg 488
                || || || ||||| ||||||| ||| ||||| |||||||| ||||| ||||||||
Sbjct: 19481694 ttgacacctggaataggaattgtgcccttgcagatgcaccaatttatggccacctg 19481639



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                                  
Query: 529      caagacagcagggactccagcccaggaagaatctgccggaacaacacaga 578
                |||| |||||| || |||| |||||||||||| |||||||||||||||||
Sbjct: 19481403 caagtcagcagagattccaacccaggaagaatttgccggaacaacacaga 19481354
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  111 bits (56), Expect = 3e-21
 Identities = 146/176 (82%)
 Strand = Plus / Minus

                                                                            
Query: 313      aatatgttctgaaccattttcttggggcactccatcgccgcggcttccagctctgagatc 372
                ||||||||||| |||||| |||| ||  ||||||| || || ||||| |||||||| |  
Sbjct: 19493090 aatatgttctggaccattctcttcggagactccattgctgcagcttcgagctctgaaact 19493031

                                                                            
Query: 373      tcaccagggctcagcctccagccaagcgcacccaagttgtcctccacgtgtctaactgtt 432
                ||| ||||||| ||||||||||| || || |||||||| ||||| ||||| || ||||||
Sbjct: 19493030 tcagcagggctaagcctccagcccagtgctcccaagttatcctcgacgtgcctgactgtt 19492971

                                                                        
Query: 433      ttcacgccgggaatcggaattgcgcctttgcaaatgcaccagtttatagccacctg 488
                || || || ||||| ||||||| ||| ||||| |||||||| ||||| ||||||||
Sbjct: 19492970 ttgacacctggaataggaattgtgcccttgcagatgcaccaatttatggccacctg 19492915



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                                  
Query: 529      caagacagcagggactccagcccaggaagaatctgccggaacaacacaga 578
                |||| |||||| || |||| |||||||||||| |||||||||||||||||
Sbjct: 19492679 caagtcagcagagattccaacccaggaagaatttgccggaacaacacaga 19492630
to top
>gb|AY105273.1| Zea mays PCO080549 mRNA sequence
          Length = 560

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 82/99 (82%)
 Strand = Plus / Minus

                                                                       
Query: 528 gcaagacagcagggactccagcccaggaagaatctgccggaacaacacagatcttggccc 587
           |||||||||||| | ||||||||||||||| || || ||||||| ||| || ||||| ||
Sbjct: 555 gcaagacagcagaggctccagcccaggaaggatttgtcggaacagcactgaccttggtcc 496

                                                  
Query: 588 atttggaaggttagaggcgtcgtacttnccggtgagcat 626
            ||||| |||||||| ||  | ||||| || ||||||||
Sbjct: 495 ttttgggaggttagaagcaccatacttcccagtgagcat 457
to top
>gb|AC154223.1| Mus musculus BAC clone RP24-138G21 from chromosome 13, complete
            sequence
          Length = 153042

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 369  gatctcaccagggctcagcctc 390
            ||||||||||||||||||||||
Sbjct: 9268 gatctcaccagggctcagcctc 9247
to top
>emb|CT010447.23| Mouse DNA sequence from clone RP23-15K11 on chromosome 13, complete
             sequence
          Length = 239180

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 369   gatctcaccagggctcagcctc 390
             ||||||||||||||||||||||
Sbjct: 75040 gatctcaccagggctcagcctc 75019
to top
>gb|AC102499.10| Mus musculus chromosome 1, clone RP24-151M13, complete sequence
          Length = 184760

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 210    gaactctgaactaggcacagaagag 234
              |||||||||||||||||||| ||||
Sbjct: 152089 gaactctgaactaggcacaggagag 152113
to top
>gb|AC113050.9| Mus musculus chromosome 1, clone RP23-250O14, complete sequence
          Length = 207359

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 210  gaactctgaactaggcacagaagag 234
            |||||||||||||||||||| ||||
Sbjct: 3813 gaactctgaactaggcacaggagag 3837
to top
>gb|AC018712.5| Homo sapiens BAC clone RP11-343H10 from 2, complete sequence
          Length = 156833

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 237    agcaacctgctctgctcttat 257
              |||||||||||||||||||||
Sbjct: 128760 agcaacctgctctgctcttat 128780
to top
>emb|BX649607.1| Aspergillus fumigatus BAC pilot project supercontig; segment 3/3
          Length = 227448

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 370    atctcaccagggctcagcctc 390
              |||||||||||||||||||||
Sbjct: 180905 atctcaccagggctcagcctc 180925
to top
>gb|AC119427.3| Homo sapiens chromosome 1 clone RP11-27G14, complete sequence
          Length = 181148

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 356    cttccagctctgagatctcac 376
              |||||||||||||||||||||
Sbjct: 153520 cttccagctctgagatctcac 153540
to top
>gb|AC125061.3| Mus musculus BAC clone RP23-418E13 from 5, complete sequence
          Length = 210342

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 374   caccagggctcagcctccagc 394
             |||||||||||||||||||||
Sbjct: 79637 caccagggctcagcctccagc 79617
to top
>emb|CT030724.7| Mouse DNA sequence from clone RP24-63K13 on chromosome 9, complete
             sequence
          Length = 155546

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 305   tggtctgaaatatgttctgaa 325
             |||||||||||||||||||||
Sbjct: 81545 tggtctgaaatatgttctgaa 81525
to top
>emb|AL845492.10| Mouse DNA sequence from clone RP23-222P7 on chromosome 2, complete
              sequence
          Length = 225684

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 218    aactaggcacagaagagaaag 238
              |||||||||||||||||||||
Sbjct: 112713 aactaggcacagaagagaaag 112733
to top
>gb|AC160635.2| Mus musculus BAC clone RP23-396N20 from chromosome 9, complete sequence
          Length = 207088

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 305   tggtctgaaatatgttctgaa 325
             |||||||||||||||||||||
Sbjct: 17585 tggtctgaaatatgttctgaa 17565
to top
>ref|NM_124738.2| Arabidopsis thaliana aldo-keto reductase/ oxidoreductase AT5G53580
            mRNA, complete cds
          Length = 1299

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 457  cctttgcaaatgcaccagtttatagccacctg 488
            |||||||| |||||||||||||| || |||||
Sbjct: 1006 cctttgcatatgcaccagtttattgcaacctg 975
to top
>gb|AC110559.11| Mus musculus chromosome 7, clone RP23-253E12, complete sequence
          Length = 192856

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 513    ggcaatactcttcaagcaag 532
              ||||||||||||||||||||
Sbjct: 191992 ggcaatactcttcaagcaag 191973
to top
>gb|BT012653.1| Arabidopsis thaliana At5g53580 gene, complete cds
          Length = 1098

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 457 cctttgcaaatgcaccagtttatagccacctg 488
           |||||||| |||||||||||||| || |||||
Sbjct: 941 cctttgcatatgcaccagtttattgcaacctg 910
to top
>dbj|AK127503.1| Homo sapiens cDNA FLJ45596 fis, clone BRTHA3017791
          Length = 4157

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 534 cagcagggactccagcccag 553
           ||||||||||||||||||||
Sbjct: 437 cagcagggactccagcccag 418
to top
>gb|AC117478.3| Homo sapiens 3 BAC RP11-598P12 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 77155

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 215   ctgaactaggcacagaagagaaag 238
             ||||| ||||||||||||||||||
Sbjct: 26848 ctgaaataggcacagaagagaaag 26825
to top
>gb|AC158315.9| Mus musculus chromosome 7, clone RP23-146D22, complete sequence
          Length = 212973

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 513   ggcaatactcttcaagcaag 532
             ||||||||||||||||||||
Sbjct: 77135 ggcaatactcttcaagcaag 77154
to top
>dbj|AK221481.1| Arabidopsis thaliana mRNA for aldo/keto reductase-like protein,
            complete cds, clone: RAFL07-43-L22
          Length = 1271

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 457  cctttgcaaatgcaccagtttatagccacctg 488
            |||||||| |||||||||||||| || |||||
Sbjct: 1001 cctttgcatatgcaccagtttattgcaacctg 970
to top
>gb|AC005154.1| Homo sapiens PAC clone RP4-777O23 from 7, complete sequence
          Length = 151630

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 529   caagacagcagggactccag 548
             ||||||||||||||||||||
Sbjct: 46097 caagacagcagggactccag 46116
to top
>emb|BX830085.1|CNS0A1A6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB58ZG08 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1270

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 457 cctttgcaaatgcaccagtttatagccacctg 488
           |||||||| |||||||||||||| || |||||
Sbjct: 992 cctttgcatatgcaccagtttattgcaacctg 961
to top
>gb|AC013726.7| Homo sapiens BAC clone RP11-400N9 from 2, complete sequence
          Length = 214647

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 376    ccagggctcagcctccagcc 395
              ||||||||||||||||||||
Sbjct: 193392 ccagggctcagcctccagcc 193373
to top
>gb|AC091719.3| Pan troglodytes clone RP43-26K2, complete sequence
          Length = 189864

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 529   caagacagcagggactccag 548
             ||||||||||||||||||||
Sbjct: 66008 caagacagcagggactccag 66027
to top
>gb|AC010913.9| Homo sapiens BAC clone RP11-44N22 from 2, complete sequence
          Length = 209161

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 534    cagcagggactccagcccag 553
              ||||||||||||||||||||
Sbjct: 176069 cagcagggactccagcccag 176088
to top
>gb|BC112202.1| Homo sapiens F-box protein 41, mRNA (cDNA clone IMAGE:8327670),
           partial cds
          Length = 1587

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 534 cagcagggactccagcccag 553
           ||||||||||||||||||||
Sbjct: 864 cagcagggactccagcccag 845
to top
>gb|AC091530.4| Papio anubis clone RP41-444A14, complete sequence
          Length = 162413

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 529    caagacagcagggactccag 548
              ||||||||||||||||||||
Sbjct: 116891 caagacagcagggactccag 116910
to top
>gb|AC153918.4| Mus musculus  BAC RP23-89M16 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 232574

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 222   aggcacagaagagaaagcaa 241
             ||||||||||||||||||||
Sbjct: 77781 aggcacagaagagaaagcaa 77800
to top
>dbj|AB015476.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNC6
          Length = 82952

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 457   cctttgcaaatgcaccagtttatagccacctg 488
             |||||||| |||||||||||||| || |||||
Sbjct: 51605 cctttgcatatgcaccagtttattgcaacctg 51636
to top
>emb|AL683847.12| Mouse DNA sequence from clone RP23-109A3 on chromosome 4, complete
              sequence
          Length = 212973

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 406    aagttgtcctccacgtgtct 425
              ||||||||||||||||||||
Sbjct: 121100 aagttgtcctccacgtgtct 121081
to top
>dbj|AB075820.1| Homo sapiens mRNA for KIAA1940 protein
          Length = 5627

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 534  cagcagggactccagcccag 553
            ||||||||||||||||||||
Sbjct: 1794 cagcagggactccagcccag 1775


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,982,983
Number of Sequences: 3902068
Number of extensions: 4982983
Number of successful extensions: 91560
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91421
Number of HSP's gapped (non-prelim): 139
length of query: 630
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 607
effective length of database: 17,143,297,704
effective search space: 10405981706328
effective search space used: 10405981706328
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top