ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal5e05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MT1_WHEAT (P43400) Metallothionein-like protein 1 (MT-1) 86 3e-17
2MT1_FESRU (O24528) Metallothionein-like protein 1 (MT-1) 54 2e-07
3MT1_ORYSA (Q40633) Metallothionein-like protein 1 47 3e-05
4MT1_MAIZE (P30571) Metallothionein-like protein 1 (MT-1) 36 0.039
5MT1_HORVU (P26571) Metallothionein-like protein 1 (MT-1) 36 0.052
6ACRO_RABIT (P48038) Acrosin precursor (EC 3.4.21.10) [Contains: ... 28 8.2

>MT1_WHEAT (P43400) Metallothionein-like protein 1 (MT-1)|
          Length = 75

 Score = 86.3 bits (212), Expect = 3e-17
 Identities = 42/44 (95%), Positives = 43/44 (97%)
 Frame = -3

Query: 396 MYPDLTEQGSATAQVAAVVVLGMAPENKAGQFEVAAGQSGEGCS 265
           MYPDLTEQGSA AQVAAVVVLG+APENKAGQFEVAAGQSGEGCS
Sbjct: 20  MYPDLTEQGSAAAQVAAVVVLGVAPENKAGQFEVAAGQSGEGCS 63



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>MT1_FESRU (O24528) Metallothionein-like protein 1 (MT-1)|
          Length = 70

 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 30/43 (69%), Positives = 33/43 (76%)
 Frame = -3

Query: 396 MYPDLTEQGSATAQVAAVVVLGMAPENKAGQFEVAAGQSGEGC 268
           MYPDL EQ S T Q  AVVV+G+A ENKAGQFE+A   SGEGC
Sbjct: 20  MYPDLDEQASTTTQ--AVVVVGVAHENKAGQFEMA---SGEGC 57



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>MT1_ORYSA (Q40633) Metallothionein-like protein 1|
          Length = 74

 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 26/45 (57%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
 Frame = -3

Query: 393 YPDLTEQGSATAQVAAVVVLGMAPENKAGQFEVAA--GQSGEGCS 265
           YPDL E+ S+T    A VVLG+APE KA QFE AA  G++  GCS
Sbjct: 21  YPDLEEKSSSTK---ATVVLGVAPEKKAQQFEAAAESGETAHGCS 62



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>MT1_MAIZE (P30571) Metallothionein-like protein 1 (MT-1)|
          Length = 76

 Score = 36.2 bits (82), Expect = 0.039
 Identities = 24/47 (51%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
 Frame = -3

Query: 393 YPDLTEQGSATAQVAAVVVLGMAPENKAG-QFEVAAGQSGE---GCS 265
           YPDL E  +A       VVLG+APE KA  +F  AA +SGE   GCS
Sbjct: 21  YPDLEETSTAAQPT---VVLGVAPEKKAAPEFVEAAAESGEAAHGCS 64



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>MT1_HORVU (P26571) Metallothionein-like protein 1 (MT-1)|
          Length = 74

 Score = 35.8 bits (81), Expect = 0.052
 Identities = 23/46 (50%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
 Frame = -3

Query: 396 MYPDLTEQGSATAQVAAVVVLGMAPENKAGQFEVAA--GQSGEGCS 265
           MYPDL E+  AT QV  V+VLG+       QFE AA  G++  GCS
Sbjct: 20  MYPDLEEKSGATMQVT-VIVLGVGSAKV--QFEEAAEFGEAAHGCS 62



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>ACRO_RABIT (P48038) Acrosin precursor (EC 3.4.21.10) [Contains: Acrosin light|
           chain; Acrosin heavy chain]
          Length = 431

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
 Frame = +2

Query: 272 PSPDWPAAT--SNCPALFSGAMPRTTTAATWAVALPCSVRSGYIFPHLQSEPQLQPDPQP 445
           P  DW A+   SN   +   A P   T  +  V  P S    + F H    P   P P P
Sbjct: 278 PFLDWIASRIGSNALRMIQPATPTPPTTRSPGVHQPPSAHPPWYFQHASGPPHPHPHPHP 337


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,431,329
Number of Sequences: 219361
Number of extensions: 421353
Number of successful extensions: 1804
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1768
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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