ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal4o23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CHO2_SCHPO (O74787) Phosphatidylethanolamine N-methyltransferase... 33 0.66
2ADC_CLOAB (P23670) Acetoacetate decarboxylase (EC 4.1.1.4) (ADC)... 30 5.6

>CHO2_SCHPO (O74787) Phosphatidylethanolamine N-methyltransferase (EC 2.1.1.17)|
           (PEAMT)
          Length = 905

 Score = 33.5 bits (75), Expect = 0.66
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = +2

Query: 263 LHHAELNLRGTG--LHIPTMVVLVGPVNFQF*N*YACVILFLKNISIFYYVVRTQTYYHE 436
           ++HA L+ RG      +P    LVG VNF F       +L +   SIF  ++ + ++Y +
Sbjct: 347 INHARLSPRGEDNEFELPPEHDLVGFVNFDFTRISDVALLIIALYSIFIILLSSNSHYSQ 406

Query: 437 LWSFSNKF 460
            W+    F
Sbjct: 407 FWAIFQAF 414



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>ADC_CLOAB (P23670) Acetoacetate decarboxylase (EC 4.1.1.4) (ADC) (AAD)|
          Length = 244

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +1

Query: 76  KIITILILSHSDITTHAVSSSPSRLQDNTFKASTLPNMP---LLLSIHFLLDIELPSRAV 246
           +I  ++    +D+T H   + P+RLQ      + L ++P   ++ S H L DI LP   V
Sbjct: 179 RICELINAKITDVTVHEAWTGPTRLQLFDHAMAPLNDLPVKEIVSSSHILADIILPRAEV 238

Query: 247 I 249
           I
Sbjct: 239 I 239


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,281,418
Number of Sequences: 219361
Number of extensions: 2068912
Number of successful extensions: 4544
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4539
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7196276819
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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