ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal4o20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FRE1_YEAST (P32791) Ferric reductase transmembrane component 1 p... 29 3.3
2KBTB7_HUMAN (Q8WVZ9) Kelch repeat and BTB domain-containing prot... 28 5.7
3UXAC_XANAC (Q8PET9) Uronate isomerase (EC 5.3.1.12) (Glucuronate... 28 5.7
4DLGP3_RAT (P97838) Disks large-associated protein 3 (DAP-3) (SAP... 27 9.7
5SPL10_ARATH (Q8S9L0) Squamosa promoter-binding-like protein 10 27 9.7

>FRE1_YEAST (P32791) Ferric reductase transmembrane component 1 precursor (EC|
           1.16.1.7) (Ferric-chelate reductase 1)
          Length = 686

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 26/109 (23%), Positives = 41/109 (37%), Gaps = 28/109 (25%)
 Frame = +2

Query: 8   LITVQYILAIRKQPYYSLR--SCKSF*RFH*WTIYGCI*TYFKMYIHSFCF--------I 157
           L  V Y+  IR  P+  +   S  +F  +H W+ Y C   +    +HS           +
Sbjct: 265 LFPVVYLFGIRNNPFIPITGLSFSTFNFYHKWSAYVC---FMLAVVHSIVMTASGVKRGV 321

Query: 158 CRPLVKSF------------------KRLIFRNRGSSLLLLQDKASTMV 250
            + LV+ F                     +FRNRG  + LL  KA  ++
Sbjct: 322 FQSLVRKFYFRWGIVATILMSIIIFQSEKVFRNRGYEIFLLIHKAMNIM 370



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>KBTB7_HUMAN (Q8WVZ9) Kelch repeat and BTB domain-containing protein 7|
          Length = 684

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +3

Query: 210 VVYYYYKTRQAQWWNITFSTK*TQMDDGFI 299
           V  Y Y TR+ QW NI       Q D GFI
Sbjct: 583 VTVYEYDTREDQWINIGTMLGLLQFDSGFI 612



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>UXAC_XANAC (Q8PET9) Uronate isomerase (EC 5.3.1.12) (Glucuronate isomerase)|
           (Uronic isomerase)
          Length = 472

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 251 EHHVFY*VNPNGRWIHHVNHEVFQAKCR 334
           EH+      P+  W++HV H+VF  + R
Sbjct: 105 EHYTLLRGTPSALWLNHVFHDVFDLRIR 132



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>DLGP3_RAT (P97838) Disks large-associated protein 3 (DAP-3)|
           (SAP90/PSD-95-associated protein 3) (SAPAP3)
           (PSD-95/SAP90-binding protein 3)
          Length = 977

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 10  DNCAIHPRNSQATLLLPPFLQVFLK 84
           ++C  HP+   AT LLP FL  F K
Sbjct: 104 EDCVGHPQGKGATRLLPTFLDQFEK 128



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>SPL10_ARATH (Q8S9L0) Squamosa promoter-binding-like protein 10|
          Length = 396

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 228 KTRQAQWWNITFSTK*TQMDDGFIMS 305
           ++ +   W  T+ TK TQM+ GF +S
Sbjct: 280 RSEEKYTWGTTYETKPTQMESGFTLS 305


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,199,704
Number of Sequences: 219361
Number of extensions: 893887
Number of successful extensions: 1956
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1956
length of database: 80,573,946
effective HSP length: 86
effective length of database: 61,708,900
effective search space used: 1481013600
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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