ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal4o19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FTSH1_SYNY3 (Q55700) Cell division protein ftsH homolog 1 (EC 3.... 38 0.008
2FTSH_GUITH (O78516) Cell division protein ftsH homolog (EC 3.4.2... 37 0.019
3FTSH_PORPU (P51327) Cell division protein ftsH homolog (EC 3.4.2... 37 0.019
4FTSH_ODOSI (P49825) Cell division protein ftsH homolog (EC 3.4.2... 36 0.032
5FTSH_CYAME (Q9TJ83) Cell division protein ftsH homolog (EC 3.4.2... 28 5.1

>FTSH1_SYNY3 (Q55700) Cell division protein ftsH homolog 1 (EC 3.4.24.-)|
          Length = 627

 Score = 37.7 bits (86), Expect = 0.008
 Identities = 14/26 (53%), Positives = 23/26 (88%)
 Frame = -3

Query: 182 VLLEKETLSGDEFRAILSEFTEIPVE 105
           +L+EKET+ G+EFR I++E+ E+PV+
Sbjct: 595 LLIEKETIDGEEFRQIVAEYAEVPVK 620



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>FTSH_GUITH (O78516) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 631

 Score = 36.6 bits (83), Expect = 0.019
 Identities = 14/24 (58%), Positives = 20/24 (83%)
 Frame = -3

Query: 182 VLLEKETLSGDEFRAILSEFTEIP 111
           +L+EKET+ GDEFR I+ +FT +P
Sbjct: 596 LLIEKETIDGDEFRQIVGDFTSLP 619



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>FTSH_PORPU (P51327) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 628

 Score = 36.6 bits (83), Expect = 0.019
 Identities = 15/27 (55%), Positives = 22/27 (81%)
 Frame = -3

Query: 182 VLLEKETLSGDEFRAILSEFTEIPVEN 102
           +L+EKET+ G+EFR I+ E+T IP +N
Sbjct: 596 LLIEKETIEGNEFRHIVKEYTAIPEKN 622



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>FTSH_ODOSI (P49825) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 644

 Score = 35.8 bits (81), Expect = 0.032
 Identities = 15/26 (57%), Positives = 21/26 (80%)
 Frame = -3

Query: 179 LLEKETLSGDEFRAILSEFTEIPVEN 102
           LL+KET+ GDEFR +LS +T +P +N
Sbjct: 611 LLDKETMDGDEFRELLSTYTILPNKN 636



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>FTSH_CYAME (Q9TJ83) Cell division protein ftsH homolog (EC 3.4.24.-) (FtsHCP)|
          Length = 603

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 179 LLEKETLSGDEFRAILSEFTEIPVEN 102
           L+EKETL G EFR ++S+   +   N
Sbjct: 578 LMEKETLDGKEFRQLVSQAARLTAVN 603


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.312    0.121    0.320 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,930,109
Number of Sequences: 219361
Number of extensions: 101533
Number of successful extensions: 260
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 80,573,946
effective HSP length: 39
effective length of database: 72,018,867
effective search space used: 1728452808
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
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