ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal4o13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY107857.1| Zea mays PCO113823 mRNA sequence 311 1e-81
2gb|AC123516.2| Oryza sativa (japonica cultivar-group) chromosome... 105 2e-19
3dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 105 2e-19
4dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 105 2e-19
5gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 105 2e-19
6gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 105 2e-19
7emb|BX000507.2|CNS08CDX Oryza sativa chromosome 12, . BAC OJ1003... 105 2e-19
8ref|NM_121980.2| Arabidopsis thaliana unknown protein AT5G19750 ... 50 0.008
9gb|BT001037.1| Arabidopsis thaliana At5g19750/T29J13_170 mRNA, c... 50 0.008
10gb|AY058149.1| Arabidopsis thaliana AT5g19750/T29J13_170 mRNA, c... 50 0.008
11gb|AY088454.1| Arabidopsis thaliana clone 6789 mRNA, complete se... 50 0.008
12gb|CP000323.1| Psychrobacter cryohalolentis K5, complete genome 44 0.51
13emb|CT025599.16| Mouse DNA sequence from clone RP24-254G12 on ch... 44 0.51
14gb|AC154678.2| Mus musculus BAC clone RP24-302G10 from chromosom... 42 2.0
15ref|XM_414355.1| PREDICTED: Gallus gallus similar to anion excha... 40 7.9
16gb|AC149486.1| Populus trichocarpa clone Pop1-8L22, complete seq... 40 7.9
17gb|AC149543.1| Populus trichocarpa clone Pop1-47M20, complete se... 40 7.9
18gb|AC105947.11| Mus musculus chromosome 18, clone RP24-66N1, com... 40 7.9
19gb|AC122905.3| Mus musculus BAC clone RP23-47A1 from 10, complet... 40 7.9
20emb|AL135787.13| Human DNA sequence from clone RP11-16L21 on chr... 40 7.9
21emb|AJ719425.1| Gallus gallus mRNA for hypothetical protein, clo... 40 7.9
22ref|NM_001006350.1| Gallus gallus Der1-like domain family, membe... 40 7.9
23gb|AC078906.6| Homo sapiens, clone RP11-142A23, complete sequence 40 7.9
24tpg|BK001240.1| TPA: TPA_exp: Homo sapiens growth arrest-specifi... 40 7.9
25emb|BX930511.2| Gallus gallus finished cDNA, clone ChEST619h11 40 7.9
26ref|XM_309351.2| Anopheles gambiae str. PEST ENSANGP00000015015 ... 40 7.9
27ref|XM_564195.1| Anopheles gambiae str. PEST ENSANGP00000028864 ... 40 7.9
28ref|XM_564194.1| Anopheles gambiae str. PEST ENSANGP00000028392 ... 40 7.9
29dbj|AP001376.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 7.9
30dbj|AP000742.5| Homo sapiens genomic DNA, chromosome 11 clone:CM... 40 7.9
31gb|AC124235.11| Mus musculus chromosome 13, clone RP23-273G24, c... 40 7.9
32emb|BX072579.14| Human DNA sequence from clone RP11-199F6 on chr... 40 7.9 
>gb|AY107857.1| Zea mays PCO113823 mRNA sequence
          Length = 677

 Score =  311 bits (157), Expect = 1e-81
 Identities = 286/329 (86%)
 Strand = Plus / Minus

                                                                       
Query: 255 tgagctttatatgacaaaatcacgttccatgcaagggctacaaaattagcggcaagaacc 314
           ||||||||| |||| |||||||| ||||||||||||||||||||||||||  |||| |||
Sbjct: 352 tgagctttaaatgataaaatcacattccatgcaagggctacaaaattagcaccaaggacc 293

                                                                       
Query: 315 tggagcttctgtgggacaaaatagaaattcaaaaactggaacggtatccacaattgccaa 374
           || | |||||| || || || || |||||||||||||| || |||||||| |||||||||
Sbjct: 292 tgaaacttctgaggaacgaagtaaaaattcaaaaactgaaatggtatccataattgccaa 233

                                                                       
Query: 375 ttcgcgatcaatgaagagaaccactcctgcttaagctttggcactacaagtgatggcttt 434
           ||||| | || ||| || ||||| |||||||||||||||||||| ||||| || ||||||
Sbjct: 232 ttcgccaacactgatgataaccattcctgcttaagctttggcaccacaagagagggcttt 173

                                                                       
Query: 435 ccctccaaggttacgagtaagctcatgaagacaccaatgaaaacgggagagaagatgaac 494
           ||||||||||| || ||||||||||| ||||| |||||||||| ||||||||| ||||||
Sbjct: 172 ccctccaaggtgactagtaagctcataaagacgccaatgaaaatgggagagaaaatgaac 113

                                                                       
Query: 495 tggtcaagtaacaggcgagaaatgacaccggatgtcccgctgattgtcactaatttactc 554
           || |||||||  ||||||| |||| |||| |||| ||| ||||||||||||||||| |||
Sbjct: 112 tgatcaagtataaggcgagcaatggcacctgatgccccactgattgtcactaatttgctc 53

                                        
Query: 555 aaatacaagtaccagaaatgcaacgttgg 583
           |||||||||||||||| ||| || |||||
Sbjct: 52  aaatacaagtaccagacatgtaaagttgg 24
to top
>gb|AC123516.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0035B18, complete sequence
          Length = 123425

 Score =  105 bits (53), Expect = 2e-19
 Identities = 86/97 (88%)
 Strand = Plus / Plus

                                                                         
Query: 400   cctgcttaagctttggcactacaagtgatggctttccctccaaggttacgagtaagctca 459
             ||||||| |||||||| |||||||| || ||||||||||||||||| |||||||| ||||
Sbjct: 51069 cctgcttgagctttggaactacaagagaaggctttccctccaaggtgacgagtaaactca 51128

                                                  
Query: 460   tgaagacaccaatgaaaacgggagagaagatgaactg 496
             | || || |||||||||| ||||||||| ||||||||
Sbjct: 51129 taaacactccaatgaaaatgggagagaaaatgaactg 51165



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 71/80 (88%)
 Strand = Plus / Plus

                                                                         
Query: 324   tgtgggacaaaatagaaattcaaaaactggaacggtatccacaattgccaattcgcgatc 383
             ||||||||||| || |||||||| ||||| || ||||||||||||||||||||||| |||
Sbjct: 50780 tgtgggacaaagtaaaaattcaagaactgaaagggtatccacaattgccaattcgcaatc 50839

                                 
Query: 384   aatgaagagaaccactcctg 403
             | ||| || |||||||||||
Sbjct: 50840 actgatgataaccactcctg 50859



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 59/64 (92%)
 Strand = Plus / Plus

                                                                         
Query: 255   tgagctttatatgacaaaatcacgttccatgcaagggctacaaaattagcggcaagaacc 314
             ||||||||| |||| | |||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 50575 tgagctttaaatgatagaatcacgttccacgcaagggctacaaaattagcagcaagaacc 50634

                 
Query: 315   tgga 318
             ||||
Sbjct: 50635 tgga 50638



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 59/70 (84%)
 Strand = Plus / Plus

                                                                         
Query: 498   tcaagtaacaggcgagaaatgacaccggatgtcccgctgattgtcactaatttactcaaa 557
             |||||||| ||||||| |||  |||| ||||  ||  |||| ||||||||||||||||| 
Sbjct: 51295 tcaagtaagaggcgagcaattgcacctgatgcaccattgatcgtcactaatttactcaag 51354

                       
Query: 558   tacaagtacc 567
             ||||||||||
Sbjct: 51355 tacaagtacc 51364
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score =  105 bits (53), Expect = 2e-19
 Identities = 86/97 (88%)
 Strand = Plus / Plus

                                                                           
Query: 400     cctgcttaagctttggcactacaagtgatggctttccctccaaggttacgagtaagctca 459
               ||||||| |||||||| |||||||| || ||||||||||||||||| |||||||| ||||
Sbjct: 1336766 cctgcttgagctttggaactacaagagaaggctttccctccaaggtgacgagtaaactca 1336825

                                                    
Query: 460     tgaagacaccaatgaaaacgggagagaagatgaactg 496
               | || || |||||||||| ||||||||| ||||||||
Sbjct: 1336826 taaacactccaatgaaaatgggagagaaaatgaactg 1336862



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 59/64 (92%)
 Strand = Plus / Plus

                                                                           
Query: 255     tgagctttatatgacaaaatcacgttccatgcaagggctacaaaattagcggcaagaacc 314
               ||||||||| |||| | |||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 1336385 tgagctttaaatgatagaatcacgttccacgcaagggctacaaaattagcagcaagaacc 1336444

                   
Query: 315     tgga 318
               ||||
Sbjct: 1336445 tgga 1336448



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 70/80 (87%)
 Strand = Plus / Plus

                                                                           
Query: 324     tgtgggacaaaatagaaattcaaaaactggaacggtatccacaattgccaattcgcgatc 383
               ||||||||||| || |||||||| ||||| || |||||||||||||||||||| || |||
Sbjct: 1336594 tgtgggacaaagtaaaaattcaagaactgaaaaggtatccacaattgccaatttgcaatc 1336653

                                   
Query: 384     aatgaagagaaccactcctg 403
               | ||| || |||||||||||
Sbjct: 1336654 actgatgataaccactcctg 1336673



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                          
Query: 541     tcactaatttactcaaatacaagtacc 567
               |||||||||||||||| ||||||||||
Sbjct: 1337032 tcactaatttactcaagtacaagtacc 1337058
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score =  105 bits (53), Expect = 2e-19
 Identities = 86/97 (88%)
 Strand = Plus / Plus

                                                                           
Query: 400     cctgcttaagctttggcactacaagtgatggctttccctccaaggttacgagtaagctca 459
               ||||||| |||||||| |||||||| || ||||||||||||||||| |||||||| ||||
Sbjct: 1432274 cctgcttgagctttggaactacaagagaaggctttccctccaaggtgacgagtaaactca 1432333

                                                    
Query: 460     tgaagacaccaatgaaaacgggagagaagatgaactg 496
               | || || |||||||||| ||||||||| ||||||||
Sbjct: 1432334 taaacactccaatgaaaatgggagagaaaatgaactg 1432370



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 71/80 (88%)
 Strand = Plus / Plus

                                                                           
Query: 324     tgtgggacaaaatagaaattcaaaaactggaacggtatccacaattgccaattcgcgatc 383
               ||||||||||| || |||||||| ||||| || ||||||||||||||||||||||| |||
Sbjct: 1431985 tgtgggacaaagtaaaaattcaagaactgaaagggtatccacaattgccaattcgcaatc 1432044

                                   
Query: 384     aatgaagagaaccactcctg 403
               | ||| || |||||||||||
Sbjct: 1432045 actgatgataaccactcctg 1432064



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 59/64 (92%)
 Strand = Plus / Plus

                                                                           
Query: 255     tgagctttatatgacaaaatcacgttccatgcaagggctacaaaattagcggcaagaacc 314
               ||||||||| |||| | |||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 1431780 tgagctttaaatgatagaatcacgttccacgcaagggctacaaaattagcagcaagaacc 1431839

                   
Query: 315     tgga 318
               ||||
Sbjct: 1431840 tgga 1431843



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 59/70 (84%)
 Strand = Plus / Plus

                                                                           
Query: 498     tcaagtaacaggcgagaaatgacaccggatgtcccgctgattgtcactaatttactcaaa 557
               |||||||| ||||||| |||  |||| ||||  ||  |||| ||||||||||||||||| 
Sbjct: 1432500 tcaagtaagaggcgagcaattgcacctgatgcaccattgatcgtcactaatttactcaag 1432559

                         
Query: 558     tacaagtacc 567
               ||||||||||
Sbjct: 1432560 tacaagtacc 1432569
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  105 bits (53), Expect = 2e-19
 Identities = 86/97 (88%)
 Strand = Plus / Plus

                                                                           
Query: 400     cctgcttaagctttggcactacaagtgatggctttccctccaaggttacgagtaagctca 459
               ||||||| |||||||| |||||||| || ||||||||||||||||| |||||||| ||||
Sbjct: 1429995 cctgcttgagctttggaactacaagagaaggctttccctccaaggtgacgagtaaactca 1430054

                                                    
Query: 460     tgaagacaccaatgaaaacgggagagaagatgaactg 496
               | || || |||||||||| ||||||||| ||||||||
Sbjct: 1430055 taaacactccaatgaaaatgggagagaaaatgaactg 1430091



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 71/80 (88%)
 Strand = Plus / Plus

                                                                           
Query: 324     tgtgggacaaaatagaaattcaaaaactggaacggtatccacaattgccaattcgcgatc 383
               ||||||||||| || |||||||| ||||| || ||||||||||||||||||||||| |||
Sbjct: 1429706 tgtgggacaaagtaaaaattcaagaactgaaagggtatccacaattgccaattcgcaatc 1429765

                                   
Query: 384     aatgaagagaaccactcctg 403
               | ||| || |||||||||||
Sbjct: 1429766 actgatgataaccactcctg 1429785



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 59/64 (92%)
 Strand = Plus / Plus

                                                                           
Query: 255     tgagctttatatgacaaaatcacgttccatgcaagggctacaaaattagcggcaagaacc 314
               ||||||||| |||| | |||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 1429501 tgagctttaaatgatagaatcacgttccacgcaagggctacaaaattagcagcaagaacc 1429560

                   
Query: 315     tgga 318
               ||||
Sbjct: 1429561 tgga 1429564



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 59/70 (84%)
 Strand = Plus / Plus

                                                                           
Query: 498     tcaagtaacaggcgagaaatgacaccggatgtcccgctgattgtcactaatttactcaaa 557
               |||||||| ||||||| |||  |||| ||||  ||  |||| ||||||||||||||||| 
Sbjct: 1430221 tcaagtaagaggcgagcaattgcacctgatgcaccattgatcgtcactaatttactcaag 1430280

                         
Query: 558     tacaagtacc 567
               ||||||||||
Sbjct: 1430281 tacaagtacc 1430290
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  105 bits (53), Expect = 2e-19
 Identities = 86/97 (88%)
 Strand = Plus / Plus

                                                                           
Query: 400     cctgcttaagctttggcactacaagtgatggctttccctccaaggttacgagtaagctca 459
               ||||||| |||||||| |||||||| || ||||||||||||||||| |||||||| ||||
Sbjct: 1336766 cctgcttgagctttggaactacaagagaaggctttccctccaaggtgacgagtaaactca 1336825

                                                    
Query: 460     tgaagacaccaatgaaaacgggagagaagatgaactg 496
               | || || |||||||||| ||||||||| ||||||||
Sbjct: 1336826 taaacactccaatgaaaatgggagagaaaatgaactg 1336862



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 59/64 (92%)
 Strand = Plus / Plus

                                                                           
Query: 255     tgagctttatatgacaaaatcacgttccatgcaagggctacaaaattagcggcaagaacc 314
               ||||||||| |||| | |||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 1336385 tgagctttaaatgatagaatcacgttccacgcaagggctacaaaattagcagcaagaacc 1336444

                   
Query: 315     tgga 318
               ||||
Sbjct: 1336445 tgga 1336448



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 70/80 (87%)
 Strand = Plus / Plus

                                                                           
Query: 324     tgtgggacaaaatagaaattcaaaaactggaacggtatccacaattgccaattcgcgatc 383
               ||||||||||| || |||||||| ||||| || |||||||||||||||||||| || |||
Sbjct: 1336594 tgtgggacaaagtaaaaattcaagaactgaaaaggtatccacaattgccaatttgcaatc 1336653

                                   
Query: 384     aatgaagagaaccactcctg 403
               | ||| || |||||||||||
Sbjct: 1336654 actgatgataaccactcctg 1336673



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                          
Query: 541     tcactaatttactcaaatacaagtacc 567
               |||||||||||||||| ||||||||||
Sbjct: 1337032 tcactaatttactcaagtacaagtacc 1337058
to top
>emb|BX000507.2|CNS08CDX Oryza sativa chromosome 12, . BAC OJ1003_C01 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 157453

 Score =  105 bits (53), Expect = 2e-19
 Identities = 86/97 (88%)
 Strand = Plus / Minus

                                                                         
Query: 400   cctgcttaagctttggcactacaagtgatggctttccctccaaggttacgagtaagctca 459
             ||||||| |||||||| |||||||| || ||||||||||||||||| |||||||| ||||
Sbjct: 92403 cctgcttgagctttggaactacaagagaaggctttccctccaaggtgacgagtaaactca 92344

                                                  
Query: 460   tgaagacaccaatgaaaacgggagagaagatgaactg 496
             | || || |||||||||| ||||||||| ||||||||
Sbjct: 92343 taaacactccaatgaaaatgggagagaaaatgaactg 92307



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 59/64 (92%)
 Strand = Plus / Minus

                                                                         
Query: 255   tgagctttatatgacaaaatcacgttccatgcaagggctacaaaattagcggcaagaacc 314
             ||||||||| |||| | |||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 92784 tgagctttaaatgatagaatcacgttccacgcaagggctacaaaattagcagcaagaacc 92725

                 
Query: 315   tgga 318
             ||||
Sbjct: 92724 tgga 92721



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 70/80 (87%)
 Strand = Plus / Minus

                                                                         
Query: 324   tgtgggacaaaatagaaattcaaaaactggaacggtatccacaattgccaattcgcgatc 383
             ||||||||||| || |||||||| ||||| || |||||||||||||||||||| || |||
Sbjct: 92575 tgtgggacaaagtaaaaattcaagaactgaaaaggtatccacaattgccaatttgcaatc 92516

                                 
Query: 384   aatgaagagaaccactcctg 403
             | ||| || |||||||||||
Sbjct: 92515 actgatgataaccactcctg 92496



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 541   tcactaatttactcaaatacaagtacc 567
             |||||||||||||||| ||||||||||
Sbjct: 92137 tcactaatttactcaagtacaagtacc 92111
to top
>ref|NM_121980.2| Arabidopsis thaliana unknown protein AT5G19750 mRNA, complete cds
          Length = 1166

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                        
Query: 539 tgtcactaatttactcaaatacaagtaccagaaatgcaacgttgg 583
           |||||| | ||| ||||||||||| |||||||||||||| |||||
Sbjct: 616 tgtcaccactttgctcaaatacaaataccagaaatgcaatgttgg 572
to top
>gb|BT001037.1| Arabidopsis thaliana At5g19750/T29J13_170 mRNA, complete cds
          Length = 867

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                        
Query: 539 tgtcactaatttactcaaatacaagtaccagaaatgcaacgttgg 583
           |||||| | ||| ||||||||||| |||||||||||||| |||||
Sbjct: 561 tgtcaccactttgctcaaatacaaataccagaaatgcaatgttgg 517
to top
>gb|AY058149.1| Arabidopsis thaliana AT5g19750/T29J13_170 mRNA, complete cds
          Length = 1130

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                        
Query: 539 tgtcactaatttactcaaatacaagtaccagaaatgcaacgttgg 583
           |||||| | ||| ||||||||||| |||||||||||||| |||||
Sbjct: 579 tgtcaccactttgctcaaatacaaataccagaaatgcaatgttgg 535
to top
>gb|AY088454.1| Arabidopsis thaliana clone 6789 mRNA, complete sequence
          Length = 1140

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                        
Query: 539 tgtcactaatttactcaaatacaagtaccagaaatgcaacgttgg 583
           |||||| | ||| ||||||||||| |||||||||||||| |||||
Sbjct: 619 tgtcacaactttgctcaaatacaaataccagaaatgcaatgttgg 575
to top
>gb|CP000323.1| Psychrobacter cryohalolentis K5, complete genome
          Length = 3059876

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 400   cctgcttaagctttggcactac 421
             ||||||||||||||||||||||
Sbjct: 15628 cctgcttaagctttggcactac 15607
to top
>emb|CT025599.16| Mouse DNA sequence from clone RP24-254G12 on chromosome 14, complete
             sequence
          Length = 170436

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 327   gggacaaaatagaaattcaaaa 348
             ||||||||||||||||||||||
Sbjct: 64095 gggacaaaatagaaattcaaaa 64116
to top
>gb|AC154678.2| Mus musculus BAC clone RP24-302G10 from chromosome 16, complete sequence
          Length = 198982

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 403    gcttaagctttggcactacaa 423
              |||||||||||||||||||||
Sbjct: 144741 gcttaagctttggcactacaa 144761
to top
>ref|XM_414355.1| PREDICTED: Gallus gallus similar to anion exchanger SLC26A6a
            (LOC416012), mRNA
          Length = 2560

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 313  cctggagcttctgtgggaca 332
            ||||||||||||||||||||
Sbjct: 2396 cctggagcttctgtgggaca 2415
to top
>gb|AC149486.1| Populus trichocarpa clone Pop1-8L22, complete sequence
          Length = 66066

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 331   caaaatagaaattcaaaaac 350
             ||||||||||||||||||||
Sbjct: 58748 caaaatagaaattcaaaaac 58729
to top
>gb|AC149543.1| Populus trichocarpa clone Pop1-47M20, complete sequence
          Length = 68256

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 331   caaaatagaaattcaaaaac 350
             ||||||||||||||||||||
Sbjct: 34431 caaaatagaaattcaaaaac 34412
to top
>gb|AC105947.11| Mus musculus chromosome 18, clone RP24-66N1, complete sequence
          Length = 207139

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 266   tgacaaaatcacgttccatg 285
             ||||||||||||||||||||
Sbjct: 21479 tgacaaaatcacgttccatg 21498
to top
>gb|AC122905.3| Mus musculus BAC clone RP23-47A1 from 10, complete sequence
          Length = 152690

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 333   aaatagaaattcaaaaactggaac 356
             ||||||||||| ||||||||||||
Sbjct: 36922 aaatagaaatttaaaaactggaac 36945
to top
>emb|AL135787.13| Human DNA sequence from clone RP11-16L21 on chromosome 9 Contains the 3'
              end of a variant of the gene for  KIAA1962 protein similar
              to zinc finger protein HIT-10, the LTB4DH gene for
              leukotriene B4 12-hydroxydehydrogenase (MGC34943), the gene
              for KIAA0563-related gene (LOC286331), the GNG10 gene for
              guanine nucleotide binding protein (G protein), gamma 10, a
              novel gene, the 3' end of a novel gene and six CpG islands,
              complete sequence
          Length = 161448

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 59     caacaaaaaagatggacact 78
              ||||||||||||||||||||
Sbjct: 150039 caacaaaaaagatggacact 150058
to top
>emb|AJ719425.1| Gallus gallus mRNA for hypothetical protein, clone 2c17
          Length = 3403

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 496  ggtcaagtaacaggcgagaaatga 519
            |||||||||||| |||||||||||
Sbjct: 3244 ggtcaagtaacaagcgagaaatga 3221
to top
>ref|NM_001006350.1| Gallus gallus Der1-like domain family, member 1 (DERL1), mRNA
          Length = 3403

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 496  ggtcaagtaacaggcgagaaatga 519
            |||||||||||| |||||||||||
Sbjct: 3244 ggtcaagtaacaagcgagaaatga 3221
to top
>gb|AC078906.6| Homo sapiens, clone RP11-142A23, complete sequence
          Length = 156426

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 332   aaaatagaaattcaaaaact 351
             ||||||||||||||||||||
Sbjct: 69194 aaaatagaaattcaaaaact 69175
to top
>tpg|BK001240.1| TPA: TPA_exp: Homo sapiens growth arrest-specific 6 (GAS6) gene,
             complete cds
          Length = 45840

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 502   gtaacaggcgagaaatgaca 521
             ||||||||||||||||||||
Sbjct: 19028 gtaacaggcgagaaatgaca 19047
to top
>emb|BX930511.2| Gallus gallus finished cDNA, clone ChEST619h11
          Length = 771

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 313 cctggagcttctgtgggaca 332
           ||||||||||||||||||||
Sbjct: 589 cctggagcttctgtgggaca 608
to top
>ref|XM_309351.2| Anopheles gambiae str. PEST ENSANGP00000015015
           (ENSANGG00000012526), partial mRNA
          Length = 1101

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 178 catgttgcaaccggccaggt 197
           ||||||||||||||||||||
Sbjct: 420 catgttgcaaccggccaggt 401
to top
>ref|XM_564195.1| Anopheles gambiae str. PEST ENSANGP00000028864 (ENSANGG00000012526),
            mRNA
          Length = 2980

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 178  catgttgcaaccggccaggt 197
            ||||||||||||||||||||
Sbjct: 1258 catgttgcaaccggccaggt 1239
to top
>ref|XM_564194.1| Anopheles gambiae str. PEST ENSANGP00000028392 (ENSANGG00000012526),
            mRNA
          Length = 2954

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 178  catgttgcaaccggccaggt 197
            ||||||||||||||||||||
Sbjct: 1232 catgttgcaaccggccaggt 1213
to top
>dbj|AP001376.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-775E2, complete
              sequence
          Length = 181300

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 65     aaaagatggacactagttta 84
              ||||||||||||||||||||
Sbjct: 138179 aaaagatggacactagttta 138198
to top
>dbj|AP000742.5| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-82B15, complete
             sequence
          Length = 166543

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 65    aaaagatggacactagttta 84
             ||||||||||||||||||||
Sbjct: 41537 aaaagatggacactagttta 41556
to top
>gb|AC124235.11| Mus musculus chromosome 13, clone RP23-273G24, complete sequence
          Length = 242383

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 322   tctgtgggacaaaatagaaa 341
             ||||||||||||||||||||
Sbjct: 42188 tctgtgggacaaaatagaaa 42169
to top
>emb|BX072579.14| Human DNA sequence from clone RP11-199F6 on chromosome 13 Contains the
             GAS6 gene for growth arrest-specific 6, six novel genes
             and ten CpG islands, complete sequence
          Length = 170020

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 502   gtaacaggcgagaaatgaca 521
             ||||||||||||||||||||
Sbjct: 78840 gtaacaggcgagaaatgaca 78821


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,937,383
Number of Sequences: 3902068
Number of extensions: 4937383
Number of successful extensions: 89694
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89521
Number of HSP's gapped (non-prelim): 173
length of query: 583
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 560
effective length of database: 17,143,297,704
effective search space: 9600246714240
effective search space used: 9600246714240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top