ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal4o12 |
|---|---|
| Clone Library Name | barley_pub |
>PIMT_PYRFU (Q8TZR3) Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77)| (Protein-beta-aspartate methyltransferase) (PIMT) (Protein L-isoaspartyl methyltransferase) (L-isoaspartyl protein carboxyl methyltransferase) Length = 219 Score = 33.9 bits (76), Expect = 0.37 Identities = 24/66 (36%), Positives = 32/66 (48%) Frame = +1 Query: 178 PRDSWIYGPAKLEASFQSPLPCQQQAGGRSSRPHPRTAALSPANLLPCSSVLSLGSISPY 357 PR ++ K A PLP AG S PH L ANL P ++L +G+ S + Sbjct: 37 PRYLFVEDKYKKYAHIDEPLPIP--AGQTVSAPHMVAIMLEIANLKPGMNILEVGTGSGW 94 Query: 358 LAALVS 375 AAL+S Sbjct: 95 NAALIS 100
>PHC2_HUMAN (Q8IXK0) Polyhomeotic-like protein 2 (hPH2) (Early development| regulatory protein 2) Length = 858 Score = 31.6 bits (70), Expect = 1.8 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 9/54 (16%) Frame = +1 Query: 226 QSPLPCQQQAGGRSSRP------HPRTAALSPANLLPCSS---VLSLGSISPYL 360 Q P P QQQ + SRP HP+ A++SP+ L SS + LG ++P L Sbjct: 352 QQPQPQQQQPPPQQSRPVLQAEPHPQLASVSPSVALQPSSEAHAMPLGPVTPAL 405
>VC04_VARV (P34012) Protein C4| Length = 316 Score = 31.2 bits (69), Expect = 2.4 Identities = 14/27 (51%), Positives = 18/27 (66%) Frame = -1 Query: 176 DVSSSLRGNAVCYCYA*IDPHGCLLDL 96 D+S S GN +CYC +DPH L+DL Sbjct: 163 DISDSQEGNNLCYCVITMDPHH-LIDL 188
>SC5A4_HUMAN (Q9NY91) Low affinity sodium-glucose cotransporter (Sodium/glucose| cotransporter 3) (Na(+)/glucose cotransporter 3) Length = 659 Score = 30.8 bits (68), Expect = 3.1 Identities = 18/55 (32%), Positives = 30/55 (54%) Frame = -2 Query: 466 VHKVYEDKNMGILCYTDENGELVCEGLDEGPRLTRRDMEKLTREREPKSTAEDWR 302 V + Y +K+ G L + +L C GL +GP+LT+ + E L+++ S WR Sbjct: 587 VEEDYPEKSRGCL---KKAYDLFC-GLQKGPKLTKEEEEALSKKLTDTSERPSWR 637
>G3PA_MAIZE (P09315) Glyceraldehyde-3-phosphate dehydrogenase A, chloroplast| precursor (EC 1.2.1.13) (NADP-dependent glyceraldehydephosphate dehydrogenase subunit A) Length = 403 Score = 30.8 bits (68), Expect = 3.1 Identities = 11/21 (52%), Positives = 15/21 (71%) Frame = -1 Query: 290 AVRGWGRLERPPACCWHGKGD 228 A+ G+GR+ R CWHG+GD Sbjct: 71 AINGFGRIGRNFLRCWHGRGD 91
>SALL1_MOUSE (Q9ER74) Sal-like protein 1 (Zinc finger protein Spalt-3) (Sal-3)| (MSal-3) Length = 1322 Score = 30.8 bits (68), Expect = 3.1 Identities = 26/79 (32%), Positives = 33/79 (41%), Gaps = 2/79 (2%) Frame = +1 Query: 157 RRLEETSPRDSWIYGPAKLEASFQSPLPCQQQAGGRSSRPHPRTAALSPANLLPCS--SV 330 RRL P P K FQ L + +G SS + TAALS + + SV Sbjct: 1194 RRLSVDGPMTFLGGNPVKFPEMFQKDLAARSGSGDPSSFWNQYTAALSNGLAMKANEISV 1253 Query: 331 LSLGSISPYLAALVSGLHP 387 + G I P +L SG P Sbjct: 1254 IQNGGIPPIPGSLGSGSSP 1272
>KCNKF_HUMAN (Q9H427) Potassium channel subfamily K member 15 (Acid-sensitive| potassium channel protein TASK-5) (TWIK-related acid-sensitive K(+) channel 5) (Two pore potassium channel KT3.3) Length = 330 Score = 30.8 bits (68), Expect = 3.1 Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 17/135 (12%) Frame = -2 Query: 361 RDMEKLTREREPKSTAEDWR-ERALRFAGGVDWSGLQPAAGTAKETGSWLQA*PARRSMN 185 R++E+L + EP W+ + FA V + A ++G A + Sbjct: 60 RELERLALQAEPHRAGRQWKFPGSFYFAITVITTIGYGHAAPGTDSGKVFCMFYALLGIP 119 Query: 184 LVVMSLQVFVETLSVTVMRRSIPMVACL----ICMYNKDLIT-----CR*EVRIG----- 47 L +++ Q E L+ V R + CL C+ ++L+ C + +G Sbjct: 120 LTLVTFQSLGERLNAVVRRLLLAAKCCLGLRWTCVSTENLVVAGLLACAATLALGAVAFS 179 Query: 46 --EGWRLINSYSFCF 8 EGW ++Y +CF Sbjct: 180 HFEGWTFFHAYYYCF 194
>NOS1_RAT (P29476) Nitric-oxide synthase, brain (EC 1.14.13.39) (NOS type I)| (Neuronal NOS) (N-NOS) (nNOS) (Constitutive NOS) (NC-NOS) (BNOS) Length = 1429 Score = 30.8 bits (68), Expect = 3.1 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = -3 Query: 486 RSASPARCTRFMKTKTWASSVTPT 415 ++ SP+RC RF+K K W + V T Sbjct: 290 KNGSPSRCPRFLKVKNWETDVVLT 313
>NOS1_MOUSE (Q9Z0J4) Nitric-oxide synthase, brain (EC 1.14.13.39) (NOS type I)| (Neuronal NOS) (N-NOS) (nNOS) (Constitutive NOS) (NC-NOS) (bNOS) Length = 1429 Score = 30.8 bits (68), Expect = 3.1 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = -3 Query: 486 RSASPARCTRFMKTKTWASSVTPT 415 ++ SP+RC RF+K K W + V T Sbjct: 290 KNGSPSRCPRFLKVKNWETDVVLT 313
>TARA_HUMAN (Q9H2D6) TRIO and F-actin-binding protein (Protein Tara)| (Trio-associated repeat on actin) Length = 2365 Score = 30.8 bits (68), Expect = 3.1 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 6/77 (7%) Frame = +1 Query: 91 TYRSSKQPWGSIYA*Q*QTA--FPRRLEE----TSPRDSWIYGPAKLEASFQSPLPCQQQ 252 T R K+ WG A + + PR L + TSP ++W GPA+ S+ S P Sbjct: 1480 TSREYKESWGQPEAWEEKPTHELPRELGKRSPLTSPPENW-GGPAESSQSWHSGTPTAVG 1538 Query: 253 AGGRSSRPHPRTAALSP 303 G + P+PR + P Sbjct: 1539 WGAEGACPYPRGSERRP 1555
>PIMT_PYRHO (O59534) Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77)| (Protein-beta-aspartate methyltransferase) (PIMT) (Protein L-isoaspartyl methyltransferase) (L-isoaspartyl protein carboxyl methyltransferase) Length = 220 Score = 30.4 bits (67), Expect = 4.1 Identities = 23/66 (34%), Positives = 32/66 (48%) Frame = +1 Query: 178 PRDSWIYGPAKLEASFQSPLPCQQQAGGRSSRPHPRTAALSPANLLPCSSVLSLGSISPY 357 PR ++ K A PLP AG S PH L A+L P +VL +G+ S + Sbjct: 37 PRYLFVEDRYKKYAHVDEPLPIP--AGQTISAPHMVAIMLEIADLKPGMNVLEVGTGSGW 94 Query: 358 LAALVS 375 AAL++ Sbjct: 95 NAALIA 100
>G3PB_ARATH (P25857) Glyceraldehyde-3-phosphate dehydrogenase B, chloroplast| precursor (EC 1.2.1.13) (NADP-dependent glyceraldehydephosphate dehydrogenase subunit B) Length = 447 Score = 30.4 bits (67), Expect = 4.1 Identities = 13/34 (38%), Positives = 18/34 (52%) Frame = -1 Query: 329 TEEHGRRLAGESAAVRGWGRLERPPACCWHGKGD 228 T G +A A+ G+GR+ R CWHG+ D Sbjct: 72 TPVRGETVAKLKVAINGFGRIGRNFLRCWHGRKD 105
>SREC2_MOUSE (P59222) Scavenger receptor class F member 2 precursor (Scavenger| receptor expressed by endothelial cells 2 protein) (SREC-II) Length = 833 Score = 30.0 bits (66), Expect = 5.3 Identities = 16/46 (34%), Positives = 22/46 (47%) Frame = +1 Query: 172 TSPRDSWIYGPAKLEASFQSPLPCQQQAGGRSSRPHPRTAALSPAN 309 T P+ SWI+G A+ SP P GR + P P +P+N Sbjct: 653 TKPKVSWIHGKHSAAAAAPSPPP-----AGRKAAPSPSGRKRTPSN 693
>SLT11_EMENI (Q5AX35) Pre-mRNA-splicing factor slt11| Length = 385 Score = 30.0 bits (66), Expect = 5.3 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 3/43 (6%) Frame = +1 Query: 199 GPAKLEASFQ-SPLPCQQQAGGRSSRPHPRTAALSP--ANLLP 318 GP + S + +PLP + + G R RP P TA L P A++LP Sbjct: 188 GPVRTSESRRGTPLPGRGRGGVRGGRPFPGTAQLPPSQADILP 230
>G3PA_SPIOL (P19866) Glyceraldehyde-3-phosphate dehydrogenase A, chloroplast| precursor (EC 1.2.1.13) (NADP-dependent glyceraldehydephosphate dehydrogenase subunit A) Length = 401 Score = 30.0 bits (66), Expect = 5.3 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = -1 Query: 335 ERTEEHGRRLAGESAAVRGWGRLERPPACCWHGKGD 228 +R+ ++G A A+ G+GR+ R CWHG+ D Sbjct: 55 KRSSQNGVVEAKLKVAINGFGRIGRNFLRCWHGRKD 90
>G3PB_TOBAC (P09044) Glyceraldehyde-3-phosphate dehydrogenase B, chloroplast| precursor (EC 1.2.1.13) (NADP-dependent glyceraldehydephosphate dehydrogenase subunit B) (Fragment) Length = 438 Score = 30.0 bits (66), Expect = 5.3 Identities = 13/34 (38%), Positives = 18/34 (52%) Frame = -1 Query: 329 TEEHGRRLAGESAAVRGWGRLERPPACCWHGKGD 228 T G +A A+ G+GR+ R CWHG+ D Sbjct: 45 TPVKGETVAKLKVAINGFGRIGRNFLRCWHGRKD 78
>FABH_RHOBA (P59814) 3-oxoacyl-[acyl-carrier-protein] synthase 3 (EC 2.3.1.41)| (3-oxoacyl-[acyl-carrier-protein] synthase III) (Beta-ketoacyl-ACP synthase III) (KAS III) Length = 345 Score = 29.6 bits (65), Expect = 6.9 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 2/70 (2%) Frame = +1 Query: 262 RSSRPHPRTAALSPANLLPC--SSVLSLGSISPYLAALVSGLHPSPRTPIHHSRRCNRGC 435 R + P T+ L L C ++ +S+ I L A ++ HP+P T H RR Sbjct: 46 RHAEPGQATSDLCYEAALRCLENANVSVDEIDLILVATITPDHPTPSTACHLQRRLGAVA 105 Query: 436 PCFCLHKPCA 465 P + CA Sbjct: 106 PAMDIGAACA 115
>G3PB_SPIOL (P12860) Glyceraldehyde-3-phosphate dehydrogenase B, chloroplast| precursor (EC 1.2.1.13) (NADP-dependent glyceraldehydephosphate dehydrogenase subunit B) Length = 451 Score = 29.6 bits (65), Expect = 6.9 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = -1 Query: 317 GRRLAGESAAVRGWGRLERPPACCWHGKGD 228 G +A A+ G+GR+ R CWHG+ D Sbjct: 79 GETVAKLKVAINGFGRIGRNFLRCWHGRKD 108
>NOS1_HUMAN (P29475) Nitric-oxide synthase, brain (EC 1.14.13.39) (NOS type I)| (Neuronal NOS) (N-NOS) (nNOS) (Constitutive NOS) (NC-NOS) (bNOS) Length = 1434 Score = 29.6 bits (65), Expect = 6.9 Identities = 10/24 (41%), Positives = 16/24 (66%) Frame = -3 Query: 486 RSASPARCTRFMKTKTWASSVTPT 415 ++ SP++C RF+K K W + V T Sbjct: 295 KNGSPSKCPRFLKVKNWETEVVLT 318
>IL21R_HUMAN (Q9HBE5) Interleukin-21 receptor precursor (IL-21R) (Novel| interleukin receptor) Length = 538 Score = 29.6 bits (65), Expect = 6.9 Identities = 15/42 (35%), Positives = 19/42 (45%) Frame = -2 Query: 346 LTREREPKSTAEDWRERALRFAGGVDWSGLQPAAGTAKETGS 221 L R + P + EDW AGG+ W G P + E GS Sbjct: 446 LDRLKPPLADGEDW-------AGGLPWGGRSPGGVSESEAGS 480
>NOS1_RABIT (O19132) Nitric-oxide synthase, brain (EC 1.14.13.39) (NOS type I)| (Neuronal NOS) (N-NOS) (nNOS) (Constitutive NOS) (NC-NOS) (bNOS) Length = 1435 Score = 29.6 bits (65), Expect = 6.9 Identities = 10/24 (41%), Positives = 16/24 (66%) Frame = -3 Query: 486 RSASPARCTRFMKTKTWASSVTPT 415 ++ SP++C RF+K K W + V T Sbjct: 296 KNGSPSKCPRFLKVKNWETDVVLT 319
>BEH1_ARATH (Q9S7F3) BES1/BZR1 homolog protein 1| Length = 276 Score = 29.3 bits (64), Expect = 9.1 Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 8/114 (7%) Frame = +1 Query: 157 RRLEETSPRDSWIYGPAKLEASFQSPLPCQQQAGGRSSRPHPR--TAALSPANLLP-CSS 327 R E T P S P ++FQSP+P Q + SS P P S L+P + Sbjct: 83 RPTETTVPCSSIQLSPQS--SAFQSPIPSYQASPSSSSYPSPTRFDPNQSSTYLIPYLQN 140 Query: 328 VLSLGSISPYLAALVSGLHPSPRTPIHHSRRCNRGCP-----CFCLHKPCAPCR 474 + S G+++P + + + P PI RR N P F + P +P R Sbjct: 141 LASSGNLAPLRISNSAPVTP----PISSPRRSNPRLPRWQSSNFPVSAPSSPTR 190
>YB88_YEAST (P38330) Protein YBR238C| Length = 731 Score = 29.3 bits (64), Expect = 9.1 Identities = 10/33 (30%), Positives = 17/33 (51%) Frame = +2 Query: 92 HTDQASNHGDRSTHNSNRQRFHEDLKRHHHEIH 190 H Q +++ + HN+NR H + + HH H Sbjct: 87 HLAQNNSNNSNNHHNNNRNHHHNNNRNHHQNNH 119
>PCSK4_RAT (Q78EH2) Proprotein convertase subtilisin/kexin type 4 precursor| (EC 3.4.21.-) (PC4) (Neuroendocrine convertase 3) (NEC 3) (Prohormone convertase 3) (KEX2-like endoprotease 3) Length = 678 Score = 29.3 bits (64), Expect = 9.1 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 2/60 (3%) Frame = -2 Query: 475 TCKVHKVYEDKNMGILCYTDENGELVCEGLDEGPRLTRRDMEKLT--REREPKSTAEDWR 302 T +H DK+ G ++ L+ P LT RD++ L R + AEDWR Sbjct: 355 TTDLHHQCTDKHTGTSASAPLAAGMIALALEANPLLTWRDLQHLVVRASRPAQLQAEDWR 414
>PCSK4_MOUSE (P29121) Proprotein convertase subtilisin/kexin type 4 precursor| (EC 3.4.21.-) (PC4) (Neuroendocrine convertase 3) (NEC 3) (Prohormone convertase 3) (KEX2-like endoprotease 3) Length = 655 Score = 29.3 bits (64), Expect = 9.1 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 2/60 (3%) Frame = -2 Query: 475 TCKVHKVYEDKNMGILCYTDENGELVCEGLDEGPRLTRRDMEKLT--REREPKSTAEDWR 302 T +H DK+ G ++ L+ P LT RD++ L R + AEDWR Sbjct: 355 TTDLHHQCTDKHTGTSASAPLAAGMIALALEANPLLTWRDLQHLVVRASRPAQLQAEDWR 414
>LAMB1_MOUSE (P02469) Laminin beta-1 chain precursor (Laminin B1 chain)| Length = 1786 Score = 29.3 bits (64), Expect = 9.1 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 1/79 (1%) Frame = +1 Query: 241 CQQQAGGRS-SRPHPRTAALSPANLLPCSSVLSLGSISPYLAALVSGLHPSPRTPIHHSR 417 C+ GR+ +R P T P PC L GS S + A+ H ++R Sbjct: 794 CRPNVVGRTCNRCAPGTFGFGPNGCKPCDCHLQ-GSASAFCDAITGQCHCFQGI---YAR 849 Query: 418 RCNRGCPCFCLHKPCAPCR 474 +C+R P + C PC+ Sbjct: 850 QCDRCLPGYWGFPSCQPCQ 868
>TENS1_BOVIN (Q9GLM4) Tensin-1| Length = 1715 Score = 29.3 bits (64), Expect = 9.1 Identities = 24/60 (40%), Positives = 32/60 (53%) Frame = +3 Query: 240 VPAAGWRPLQSTPPANRSALSRQSSAVLFGSLSRVNFSISRRVSLGPSSKPSHTNSPFSS 419 VP G+ STP R LSRQSSA + + S +F +S G SS P+ + SP S+ Sbjct: 1300 VPYGGY----STPEDRRPTLSRQSSASGYQAPSTPSFPVSPAYYPGLSS-PATSPSPDSA 1354
>SYN_RHOBA (Q7UHE1) Asparaginyl-tRNA synthetase (EC 6.1.1.22)| (Asparagine--tRNA ligase) (AsnRS) Length = 490 Score = 29.3 bits (64), Expect = 9.1 Identities = 16/57 (28%), Positives = 29/57 (50%) Frame = -2 Query: 466 VHKVYEDKNMGILCYTDENGELVCEGLDEGPRLTRRDMEKLTREREPKSTAEDWRER 296 +H+ ++D+ L +T CEG E R+T ++EKL P T +D+ ++ Sbjct: 174 IHRFFDDEGFNYL-HTPIITASDCEGAGEMFRVTTLNLEKLAGSNRPFDTKQDFFQK 229
>BRCA2_MOUSE (P97929) Breast cancer type 2 susceptibility protein homolog (Fanconi| anemia group D1 protein homolog) Length = 3329 Score = 29.3 bits (64), Expect = 9.1 Identities = 16/43 (37%), Positives = 22/43 (51%) Frame = +2 Query: 272 DPTREPQRSLPPIFCRALRFSLSGQFLHISPR*SRAFIQALAH 400 DPTREP + C + GQFL ISP +++ L+H Sbjct: 3115 DPTREPHAA--STCCASDLLGSGGQFLRISPTGQQSYQSPLSH 3155 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88,985,191 Number of Sequences: 219361 Number of extensions: 1905329 Number of successful extensions: 6658 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 6316 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6645 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5253413348 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
