ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal5d01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X78877.1|HVACXPII3 Hordeum vulgare L. (Alexis) mRNA for seri... 1128 0.0
2ref|NM_185973.1| Oryza sativa (japonica cultivar-group), mRNA 244 3e-61
3gb|AY224473.1| Oryza sativa (japonica cultivar-group) isolate 29... 244 3e-61
4dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 163 8e-37
5dbj|AP005184.5| Oryza sativa (japonica cultivar-group) genomic D... 163 8e-37
6gb|AY108013.1| Zea mays PCO089815 mRNA sequence 153 8e-34
7gb|AY106653.1| Zea mays PCO089814 mRNA sequence 66 1e-07
8gb|AC115809.8| Mus musculus chromosome 8, clone RP23-416L3, comp... 46 0.13
9gb|AF091216.1|AF091216 Mus musculus Wrn protein (Wrn) gene, comp... 46 0.13
10emb|CR701755.2|CNS0G4FB Tetraodon nigroviridis full-length cDNA 44 0.50
11gb|AC146525.2| Oryza sativa (japonica cultivar-group) chromosome... 42 2.0
12emb|CR695172.2|CNS0FZCG Tetraodon nigroviridis full-length cDNA 42 2.0
13emb|CR684465.2|CNS0FR31 Tetraodon nigroviridis full-length cDNA 42 2.0
14emb|CR682040.2|CNS0FP7O Tetraodon nigroviridis full-length cDNA 42 2.0
15emb|CR683612.2|CNS0FQFC Tetraodon nigroviridis full-length cDNA 42 2.0
16emb|CR682280.2|CNS0FPEC Tetraodon nigroviridis full-length cDNA 42 2.0
17emb|AL158827.27| Human DNA sequence from clone RP11-330M2 on chr... 42 2.0
18emb|AL512496.1|SPAC589 S.pombe chromosome I cosmid c589 42 2.0
19ref|NM_001019474.1| Schizosaccharomyces pombe 972h- hypothetical... 42 2.0
20dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
21gb|AC021200.7| Homo sapiens BAC clone RP11-62B4 from 4, complete... 42 2.0
22gb|AC104770.10| Homo sapiens chromosome 17, clone RP11-960B9, co... 42 2.0
23gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 2.0
24gb|AC079843.3| Oryza sativa (japonica cultivar-group) chromosome... 40 7.8
25gb|AY490796.1| Helianthus annuus clone Ha-NTIR11-3prime CC-NBS-L... 40 7.8
26ref|XM_421074.1| PREDICTED: Gallus gallus similar to Liprin-alph... 40 7.8
27gb|AY567487.2| Human Coronavirus NL63, complete genome 40 7.8
28gb|AC146867.3| Xenopus tropicalis clone CH216-119B15, complete s... 40 7.8
29gb|AY490793.1| Helianthus annuus clone Ha-NTIR11g CC-NBS-LRR gen... 40 7.8
30gb|AC123547.15| Medicago truncatula clone mth2-26n6, complete se... 40 7.8
31emb|AL500527.19| Human DNA sequence from clone RP11-302K17 on ch... 40 7.8
32emb|AL162720.8| Human DNA sequence from clone RP1-132N8 on chrom... 40 7.8
33emb|AL035251.11|HS705O1 Human DNA sequence from clone RP4-705O1 ... 40 7.8
34gb|CP000087.1| Rickettsia bellii RML369-C, complete genome 40 7.8
35gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome... 40 7.8
36emb|BX682549.8| Zebrafish DNA sequence from clone CH211-193L17 i... 40 7.8
37dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.8
38gb|AY697420.1| Human coronavirus NL63 strain Amsterdam 1 spike p... 40 7.8
39emb|BX933745.1| Gallus gallus finished cDNA, clone ChEST1005k12 40 7.8
40gb|AY902242.1| Human coronavirus NL63 isolate SWE 10614/2004 spi... 40 7.8
41gb|AC117516.5| Homo sapiens 3 BAC RP11-845C18 (Roswell Park Canc... 40 7.8
42gb|AC073409.8| Homo sapiens BAC clone RP11-17O9 from 2, complete... 40 7.8
43emb|AL672110.10| Mouse DNA sequence from clone RP23-338D24 on ch... 40 7.8
44emb|BX530723.8| Zebrafish DNA sequence from clone DKEYP-119B4 in... 40 7.8
45gb|AY758301.1| Human coronavirus NL63 strain BE03-64880 spike pr... 40 7.8
46gb|AY758298.1| Human coronavirus NL63 strain BE03-21596 spike pr... 40 7.8
47gb|AY758297.1| Human coronavirus NL63 strain BE03-1153 spike pro... 40 7.8
48gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 7.8
49emb|AL671215.4| Mouse DNA sequence from clone RP23-277C18 on chr... 40 7.8
50emb|AL672023.7| Mouse DNA sequence from clone RP23-339O19 on chr... 40 7.8 
>emb|X78877.1|HVACXPII3 Hordeum vulgare L. (Alexis) mRNA for serine carboxypeptidase II-3
          Length = 1979

 Score = 1128 bits (569), Expect = 0.0
 Identities = 572/573 (99%)
 Strand = Plus / Minus

                                                                        
Query: 1    ttgtaacacatggaggcgcagcatcctttggaggcaccagtattgcaacatgccattttg 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1917 ttgtaacacatggaggcgcagcatcctttggaggcaccagtattgcaacatgccattttg 1858

                                                                        
Query: 61   gcatagatgttcatacttaacaaattacaccatacactttcctatctatatgaaagcatt 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1857 gcatagatgttcatacttaacaaattacaccatacactttcctatctatatgaaagcatt 1798

                                                                        
Query: 121  tgctgacctgcagttacatggtctgcggagtgcatgggttgatgatgggtttctgtatct 180
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1797 tgctgacctgcagttacatggcctgcggagtgcatgggttgatgatgggtttctgtatct 1738

                                                                        
Query: 181  aactttacttgattttgcttgtttcttgtactgaatcaaatgatacaacctgtgaaacct 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1737 aactttacttgattttgcttgtttcttgtactgaatcaaatgatacaacctgtgaaacct 1678

                                                                        
Query: 241  gctggtgtactatcttttagtgtaaaaccttcttttcttttgctaatcctgttcgcattc 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1677 gctggtgtactatcttttagtgtaaaaccttcttttcttttgctaatcctgttcgcattc 1618

                                                                        
Query: 301  tttgcagtcagggagcgctttgcctgcgaggaaattctggacaagcacaagcgctcgccg 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1617 tttgcagtcagggagcgctttgcctgcgaggaaattctggacaagcacaagcgctcgccg 1558

                                                                        
Query: 361  cggctggtagctggggacctcatggcctgctcctctaacagttaccaagctgaggtcgcc 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1557 cggctggtagctggggacctcatggcctgctcctctaacagttaccaagctgaggtcgcc 1498

                                                                        
Query: 421  cttgtactgcacaatgtatccacccacctctccggcacccttggtgctgctgaaccatgg 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1497 cttgtactgcacaatgtatccacccacctctccggcacccttggtgctgctgaaccatgg 1438

                                                                        
Query: 481  cctccattttgccgccacagggagctggagctggttgacagagagtctactggaagtgac 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1437 cctccattttgccgccacagggagctggagctggttgacagagagtctactggaagtgac 1378

                                             
Query: 541  gggcactctcccatcagtgtctccactgtaaac 573
            |||||||||||||||||||||||||||||||||
Sbjct: 1377 gggcactctcccatcagtgtctccactgtaaac 1345
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>ref|NM_185973.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1575

 Score =  244 bits (123), Expect = 3e-61
 Identities = 228/263 (86%)
 Strand = Plus / Minus

                                                                        
Query: 308  tcagggagcgctttgcctgcgaggaaattctggacaagcacaagcgctcgccgcggctgg 367
            ||||| |||| ||||||| | ||||||| |||||||||||||||||||||| | ||||||
Sbjct: 1550 tcaggtagcgttttgccttcaaggaaatactggacaagcacaagcgctcgctgtggctgg 1491

                                                                        
Query: 368  tagctggggacctcatggcctgctcctctaacagttaccaagctgaggtcgcccttgtac 427
            ||||||||||| ||||||||||||||||| || ||||| | ||||||||  |||||||||
Sbjct: 1490 tagctggggacttcatggcctgctcctctcacggttacaaggctgaggttccccttgtac 1431

                                                                        
Query: 428  tgcacaatgtatccacccacctctccggcacccttggtgctgctgaaccatggcctccat 487
            ||||||||||||||||| || |||||  ||||||  ||| |||| |||||||| ||||||
Sbjct: 1430 tgcacaatgtatccaccaacgtctccaacaccctgagtgttgctaaaccatggtctccat 1371

                                                                        
Query: 488  tttgccgccacagggagctggagctggttgacagagagtctactggaagtgacgggcact 547
            || || || || || || | ||||||||||||||||  ||| ||||||||||| || |||
Sbjct: 1370 ttagcagcaactggaaggttgagctggttgacagagtatctgctggaagtgacaggtact 1311

                                   
Query: 548  ctcccatcagtgtctccactgta 570
            |||||||||||||||||||||||
Sbjct: 1310 ctcccatcagtgtctccactgta 1288
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>gb|AY224473.1| Oryza sativa (japonica cultivar-group) isolate 29039 serine
            carboxypepsidase mRNA, partial cds
          Length = 1338

 Score =  244 bits (123), Expect = 3e-61
 Identities = 228/263 (86%)
 Strand = Plus / Minus

                                                                        
Query: 308  tcagggagcgctttgcctgcgaggaaattctggacaagcacaagcgctcgccgcggctgg 367
            ||||| |||| ||||||| | ||||||| |||||||||||||||||||||| | ||||||
Sbjct: 1313 tcaggtagcgttttgccttcaaggaaatactggacaagcacaagcgctcgctgtggctgg 1254

                                                                        
Query: 368  tagctggggacctcatggcctgctcctctaacagttaccaagctgaggtcgcccttgtac 427
            ||||||||||| ||||||||||||||||| || ||||| | ||||||||  |||||||||
Sbjct: 1253 tagctggggacttcatggcctgctcctctcacggttacaaggctgaggttccccttgtac 1194

                                                                        
Query: 428  tgcacaatgtatccacccacctctccggcacccttggtgctgctgaaccatggcctccat 487
            ||||||||||||||||| || |||||  ||||||  ||| |||| |||||||| ||||||
Sbjct: 1193 tgcacaatgtatccaccaacgtctccaacaccctgagtgttgctaaaccatggtctccat 1134

                                                                        
Query: 488  tttgccgccacagggagctggagctggttgacagagagtctactggaagtgacgggcact 547
            || || || || || || | ||||||||||||||||  ||| ||||||||||| || |||
Sbjct: 1133 ttagcagcaactggaaggttgagctggttgacagagtatctgctggaagtgacaggtact 1074

                                   
Query: 548  ctcccatcagtgtctccactgta 570
            |||||||||||||||||||||||
Sbjct: 1073 ctcccatcagtgtctccactgta 1051
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  163 bits (82), Expect = 8e-37
 Identities = 130/146 (89%)
 Strand = Plus / Plus

                                                                            
Query: 308      tcagggagcgctttgcctgcgaggaaattctggacaagcacaagcgctcgccgcggctgg 367
                ||||| |||| ||||||| | ||||||| |||||||||||||||||||||| | ||||||
Sbjct: 27585606 tcaggtagcgttttgccttcaaggaaatactggacaagcacaagcgctcgctgtggctgg 27585665

                                                                            
Query: 368      tagctggggacctcatggcctgctcctctaacagttaccaagctgaggtcgcccttgtac 427
                ||||||||||| ||||||||||||||||| || ||||| | ||||||||  |||||||||
Sbjct: 27585666 tagctggggacttcatggcctgctcctctcacggttacaaggctgaggttccccttgtac 27585725

                                          
Query: 428      tgcacaatgtatccacccacctctcc 453
                ||||||||||||||||| || |||||
Sbjct: 27585726 tgcacaatgtatccaccaacgtctcc 27585751



 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 87/101 (86%)
 Strand = Plus / Plus

                                                                            
Query: 468      tgctgaaccatggcctccattttgccgccacagggagctggagctggttgacagagagtc 527
                |||| |||||||| |||||||| || || || || || | ||||||||||||||||  ||
Sbjct: 27585994 tgctaaaccatggtctccatttagcagcaactggaaggttgagctggttgacagagtatc 27586053

                                                         
Query: 528      tactggaagtgacgggcactctcccatcagtgtctccactg 568
                | ||||||||||| || ||||||||||||||||||||||||
Sbjct: 27586054 tgctggaagtgacaggtactctcccatcagtgtctccactg 27586094
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>dbj|AP005184.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0047B07
          Length = 157797

 Score =  163 bits (82), Expect = 8e-37
 Identities = 130/146 (89%)
 Strand = Plus / Plus

                                                                         
Query: 308   tcagggagcgctttgcctgcgaggaaattctggacaagcacaagcgctcgccgcggctgg 367
             ||||| |||| ||||||| | ||||||| |||||||||||||||||||||| | ||||||
Sbjct: 42599 tcaggtagcgttttgccttcaaggaaatactggacaagcacaagcgctcgctgtggctgg 42658

                                                                         
Query: 368   tagctggggacctcatggcctgctcctctaacagttaccaagctgaggtcgcccttgtac 427
             ||||||||||| ||||||||||||||||| || ||||| | ||||||||  |||||||||
Sbjct: 42659 tagctggggacttcatggcctgctcctctcacggttacaaggctgaggttccccttgtac 42718

                                       
Query: 428   tgcacaatgtatccacccacctctcc 453
             ||||||||||||||||| || |||||
Sbjct: 42719 tgcacaatgtatccaccaacgtctcc 42744



 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 87/101 (86%)
 Strand = Plus / Plus

                                                                         
Query: 468   tgctgaaccatggcctccattttgccgccacagggagctggagctggttgacagagagtc 527
             |||| |||||||| |||||||| || || || || || | ||||||||||||||||  ||
Sbjct: 42987 tgctaaaccatggtctccatttagcagcaactggaaggttgagctggttgacagagtatc 43046

                                                      
Query: 528   tactggaagtgacgggcactctcccatcagtgtctccactg 568
             | ||||||||||| || ||||||||||||||||||||||||
Sbjct: 43047 tgctggaagtgacaggtactctcccatcagtgtctccactg 43087
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>gb|AY108013.1| Zea mays PCO089815 mRNA sequence
          Length = 453

 Score =  153 bits (77), Expect = 8e-34
 Identities = 134/153 (87%)
 Strand = Plus / Minus

                                                                       
Query: 418 gcccttgtactgcacaatgtatccacccacctctccggcacccttggtgctgctgaacca 477
           ||||||||||||||| | ||| || |||||||||||||| ||||  ||||||||||||||
Sbjct: 183 gcccttgtactgcacgacgtagccgcccacctctccggcgccctgagtgctgctgaacca 124

                                                                       
Query: 478 tggcctccattttgccgccacagggagctggagctggttgacagagagtctactggaagt 537
           || |||||||||||| || || ||||||||||||||||| || |||   || ||||||||
Sbjct: 123 tgccctccattttgcggcaactgggagctggagctggttcacggagtacctgctggaagt 64

                                            
Query: 538 gacgggcactctcccatcagtgtctccactgta 570
           ||| |||||||||||||| ||||||||||||||
Sbjct: 63  gaccggcactctcccatcggtgtctccactgta 31



 Score =  101 bits (51), Expect = 2e-18
 Identities = 99/115 (86%)
 Strand = Plus / Minus

                                                                       
Query: 301 tttgcagtcagggagcgctttgcctgcgaggaaattctggacaagcacaagcgctcgccg 360
           ||||||| |||| |||| ||||||||| ||||||  |||||||||||| |||||||||| 
Sbjct: 312 tttgcagccaggaagcgttttgcctgcaaggaaaccctggacaagcacgagcgctcgcct 253

                                                                  
Query: 361 cggctggtagctggggacctcatggcctgctcctctaacagttaccaagctgagg 415
            |||||||||||||| ||||| ||||| |||||||| || || |||| |||||||
Sbjct: 252 tggctggtagctgggcacctcgtggccggctcctctgacggtgaccaggctgagg 198
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>gb|AY106653.1| Zea mays PCO089814 mRNA sequence
          Length = 618

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 61/71 (85%)
 Strand = Plus / Minus

                                                                       
Query: 500 gggagctggagctggttgacagagagtctactggaagtgacgggcactctcccatcagtg 559
           ||||||||||||||||| || |||   || ||||||||||| |||||| ||||||| |||
Sbjct: 547 gggagctggagctggttcacggagtacctgctggaagtgaccggcactntcccatcggtg 488

                      
Query: 560 tctccactgta 570
           |||||| ||||
Sbjct: 487 tctccantgta 477
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>gb|AC115809.8| Mus musculus chromosome 8, clone RP23-416L3, complete sequence
          Length = 193884

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 254    cttttagtgtaaaaccttctttt 276
              |||||||||||||||||||||||
Sbjct: 102292 cttttagtgtaaaaccttctttt 102270
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>gb|AF091216.1|AF091216 Mus musculus Wrn protein (Wrn) gene, complete cds
          Length = 97348

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 254  cttttagtgtaaaaccttctttt 276
            |||||||||||||||||||||||
Sbjct: 3759 cttttagtgtaaaaccttctttt 3737
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>emb|CR701755.2|CNS0G4FB Tetraodon nigroviridis full-length cDNA
          Length = 1449

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 375 ggacctcatggcctgctcctct 396
           ||||||||||||||||||||||
Sbjct: 116 ggacctcatggcctgctcctct 95
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>gb|AC146525.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0060D22 map near S6115, complete sequence
          Length = 139929

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 198   cttgtttcttgtactgaatca 218
             |||||||||||||||||||||
Sbjct: 27390 cttgtttcttgtactgaatca 27410
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>emb|CR695172.2|CNS0FZCG Tetraodon nigroviridis full-length cDNA
          Length = 1475

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 375 ggacctcatggcctgctcctc 395
           |||||||||||||||||||||
Sbjct: 94  ggacctcatggcctgctcctc 74
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>emb|CR684465.2|CNS0FR31 Tetraodon nigroviridis full-length cDNA
          Length = 1458

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 375 ggacctcatggcctgctcctc 395
           |||||||||||||||||||||
Sbjct: 95  ggacctcatggcctgctcctc 75
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>emb|CR682040.2|CNS0FP7O Tetraodon nigroviridis full-length cDNA
          Length = 1431

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 375 ggacctcatggcctgctcctc 395
           |||||||||||||||||||||
Sbjct: 93  ggacctcatggcctgctcctc 73
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>emb|CR683612.2|CNS0FQFC Tetraodon nigroviridis full-length cDNA
          Length = 1503

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 375 ggacctcatggcctgctcctc 395
           |||||||||||||||||||||
Sbjct: 125 ggacctcatggcctgctcctc 105
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>emb|CR682280.2|CNS0FPEC Tetraodon nigroviridis full-length cDNA
          Length = 1428

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 375 ggacctcatggcctgctcctc 395
           |||||||||||||||||||||
Sbjct: 94  ggacctcatggcctgctcctc 74
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>emb|AL158827.27| Human DNA sequence from clone RP11-330M2 on chromosome 9 Contains a
             pseudogene similar to part of a zinc finger protein, two
             novel pseudogenes, a novel gene similar to DKFZP434I1117,
             a novel pseudogene (FLJ23476), two novel gene, a novel
             gene similar to MGC12954 and four CpG islands, complete
             sequence
          Length = 186108

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 257   ttagtgtaaaaccttcttttc 277
             |||||||||||||||||||||
Sbjct: 20854 ttagtgtaaaaccttcttttc 20834
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>emb|AL512496.1|SPAC589 S.pombe chromosome I cosmid c589
          Length = 18342

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 261  tgtaaaaccttcttttctttt 281
            |||||||||||||||||||||
Sbjct: 3586 tgtaaaaccttcttttctttt 3606
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>ref|NM_001019474.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPAC589.02c),
            partial mRNA
          Length = 3672

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 261  tgtaaaaccttcttttctttt 281
            |||||||||||||||||||||
Sbjct: 1053 tgtaaaaccttcttttctttt 1033
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 198      cttgtttcttgtactgaatca 218
                |||||||||||||||||||||
Sbjct: 12348107 cttgtttcttgtactgaatca 12348087
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>gb|AC021200.7| Homo sapiens BAC clone RP11-62B4 from 4, complete sequence
          Length = 154690

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 263   taaaaccttcttttcttttgctaat 287
             |||||| ||||||||||||||||||
Sbjct: 31833 taaaactttcttttcttttgctaat 31857
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>gb|AC104770.10| Homo sapiens chromosome 17, clone RP11-960B9, complete sequence
          Length = 188574

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 433   aatgtatccacccacctctcc 453
             |||||||||||||||||||||
Sbjct: 42738 aatgtatccacccacctctcc 42718
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 198      cttgtttcttgtactgaatca 218
                |||||||||||||||||||||
Sbjct: 12427414 cttgtttcttgtactgaatca 12427394
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>gb|AC079843.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBa0013J21, complete sequence
          Length = 155290

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 188   cttgattttgcttgtttctt 207
             ||||||||||||||||||||
Sbjct: 69068 cttgattttgcttgtttctt 69049
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>gb|AY490796.1| Helianthus annuus clone Ha-NTIR11-3prime CC-NBS-LRR-like protein
           mRNA, partial cds
          Length = 2791

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 110 atgaaagcatttgctgacctgcag 133
           ||||| ||||||||||||||||||
Sbjct: 862 atgaaggcatttgctgacctgcag 885
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>ref|XM_421074.1| PREDICTED: Gallus gallus similar to Liprin-alpha 1 (Protein
           tyrosine phosphatase receptor type f
           polypeptide-interacting protein alpha 1)
           (PTPRF-interacting protein alpha 1) (LAR-interacting
           protein 1) (LIP.1) (LOC423147), mRNA
          Length = 4160

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 470 ctgaaccatggcctccattt 489
           ||||||||||||||||||||
Sbjct: 564 ctgaaccatggcctccattt 545
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>gb|AY567487.2| Human Coronavirus NL63, complete genome
          Length = 27553

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 181   aactttacttgattttgcttgttt 204
             |||||| |||||||||||||||||
Sbjct: 20476 aacttttcttgattttgcttgttt 20499
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>gb|AC146867.3| Xenopus tropicalis clone CH216-119B15, complete sequence
          Length = 157383

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 108   atatgaaagcatttgctgacctgcagttacat 139
             ||||||||||||||||||| || || ||||||
Sbjct: 83643 atatgaaagcatttgctgagctacaattacat 83674
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>gb|AY490793.1| Helianthus annuus clone Ha-NTIR11g CC-NBS-LRR gene, complete cds
          Length = 7362

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 110  atgaaagcatttgctgacctgcag 133
            ||||| ||||||||||||||||||
Sbjct: 3844 atgaaggcatttgctgacctgcag 3867
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>gb|AC123547.15| Medicago truncatula clone mth2-26n6, complete sequence
          Length = 111995

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 262   gtaaaaccttcttttctttt 281
             ||||||||||||||||||||
Sbjct: 74096 gtaaaaccttcttttctttt 74115
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>emb|AL500527.19| Human DNA sequence from clone RP11-302K17 on chromosome 10 Contains the
              gene for  Hermansky-Pudlak syndrome-6 protein (HPS6), two
              pseudogenes for  transcription elongation factor B (SIII),
              polypeptide 1, the LDB1 gene for LIM domain binding 1, a
              novel gene (KIAA0595), the NOLC1 gene for nucleolar and
              coiled-body phosphoprotein 1 and five CpG islands, complete
              sequence
          Length = 158434

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 44     tgcaacatgccattttggca 63
              ||||||||||||||||||||
Sbjct: 109835 tgcaacatgccattttggca 109854
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>emb|AL162720.8| Human DNA sequence from clone RP1-132N8 on chromosome 6 Contains a
             pseudogene of the likely ortholog of mouse suppressors of
             cytokine signalling 5 (SOCS5, CIS6, CISH6, KIAA0761),
             complete sequence
          Length = 57355

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 190   tgattttgcttgtttcttgt 209
             ||||||||||||||||||||
Sbjct: 28712 tgattttgcttgtttcttgt 28731
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>emb|AL035251.11|HS705O1 Human DNA sequence from clone RP4-705O1 on chromosome 20q11.2 Contains
             a novel gene, complete sequence
          Length = 161888

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 178   tctaactttacttgattttgcttg 201
             ||||||||||||||||| ||||||
Sbjct: 23159 tctaactttacttgattctgcttg 23182
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>gb|CP000087.1| Rickettsia bellii RML369-C, complete genome
          Length = 1522076

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 185    ttacttgattttgcttgttt 204
              ||||||||||||||||||||
Sbjct: 487174 ttacttgattttgcttgttt 487155
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>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
               Pseudo10p0.0-10p4.4, complete sequence
          Length = 2331000

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 188     cttgattttgcttgtttctt 207
               ||||||||||||||||||||
Sbjct: 2090928 cttgattttgcttgtttctt 2090909
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>emb|BX682549.8| Zebrafish DNA sequence from clone CH211-193L17 in linkage group 20,
            complete sequence
          Length = 151560

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 210  actgaatcaaatgatacaacctgt 233
            |||||| |||||||||||||||||
Sbjct: 7377 actgaaccaaatgatacaacctgt 7400
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 188     cttgattttgcttgtttctt 207
               ||||||||||||||||||||
Sbjct: 2090928 cttgattttgcttgtttctt 2090909
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>gb|AY697420.1| Human coronavirus NL63 strain Amsterdam 1 spike protein (S) mRNA,
           partial cds
          Length = 287

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 181 aactttacttgattttgcttgttt 204
           |||||| |||||||||||||||||
Sbjct: 73  aacttttcttgattttgcttgttt 96
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>emb|BX933745.1| Gallus gallus finished cDNA, clone ChEST1005k12
          Length = 1126

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 470 ctgaaccatggcctccattt 489
           ||||||||||||||||||||
Sbjct: 563 ctgaaccatggcctccattt 544
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>gb|AY902242.1| Human coronavirus NL63 isolate SWE 10614/2004 spike protein gene,
           partial cds
          Length = 586

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 181 aactttacttgattttgcttgttt 204
           |||||| |||||||||||||||||
Sbjct: 43  aacttttcttgattttgcttgttt 66
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>gb|AC117516.5| Homo sapiens 3 BAC RP11-845C18 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 172997

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 266   aaccttcttttcttttgcta 285
             ||||||||||||||||||||
Sbjct: 54614 aaccttcttttcttttgcta 54633
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>gb|AC073409.8| Homo sapiens BAC clone RP11-17O9 from 2, complete sequence
          Length = 180903

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 55     attttggcatagatgttcat 74
              ||||||||||||||||||||
Sbjct: 100998 attttggcatagatgttcat 100979
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>emb|AL672110.10| Mouse DNA sequence from clone RP23-338D24 on chromosome X, complete
             sequence
          Length = 167407

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 54    cattttggcatagatgttca 73
             ||||||||||||||||||||
Sbjct: 13712 cattttggcatagatgttca 13693
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>emb|BX530723.8| Zebrafish DNA sequence from clone DKEYP-119B4 in linkage group 20,
             complete sequence
          Length = 119735

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 210   actgaatcaaatgatacaacctgt 233
             |||||| |||||||||||||||||
Sbjct: 93249 actgaaccaaatgatacaacctgt 93272
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>gb|AY758301.1| Human coronavirus NL63 strain BE03-64880 spike protein gene,
           partial cds
          Length = 614

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 181 aactttacttgattttgcttgttt 204
           |||||| |||||||||||||||||
Sbjct: 40  aacttttcttgattttgcttgttt 63
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>gb|AY758298.1| Human coronavirus NL63 strain BE03-21596 spike protein gene,
           partial cds
          Length = 614

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 181 aactttacttgattttgcttgttt 204
           |||||| |||||||||||||||||
Sbjct: 40  aacttttcttgattttgcttgttt 63
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>gb|AY758297.1| Human coronavirus NL63 strain BE03-1153 spike protein gene, partial
           cds
          Length = 614

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 181 aactttacttgattttgcttgttt 204
           |||||| |||||||||||||||||
Sbjct: 40  aacttttcttgattttgcttgttt 63
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 188     cttgattttgcttgtttctt 207
               ||||||||||||||||||||
Sbjct: 2090879 cttgattttgcttgtttctt 2090860
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>emb|AL671215.4| Mouse DNA sequence from clone RP23-277C18 on chromosome X, complete
              sequence
          Length = 182633

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 307    gtcagggagcgctttgcctg 326
              ||||||||||||||||||||
Sbjct: 175316 gtcagggagcgctttgcctg 175335
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>emb|AL672023.7| Mouse DNA sequence from clone RP23-339O19 on chromosome X, complete
             sequence
          Length = 160615

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 263   taaaaccttcttttcttttgctaa 286
             ||||| ||||||||||||||||||
Sbjct: 74487 taaaaacttcttttcttttgctaa 74510


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,234,540
Number of Sequences: 3902068
Number of extensions: 6234540
Number of successful extensions: 148961
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 148535
Number of HSP's gapped (non-prelim): 426
length of query: 573
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 550
effective length of database: 17,143,297,704
effective search space: 9428813737200
effective search space used: 9428813737200
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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