ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal4n22 |
|---|---|
| Clone Library Name | barley_pub |
>RFIP3_HUMAN (O75154) Rab11 family-interacting protein 3 (Rab11-FIP3) (EF| hands-containing Rab-interacting protein) (Eferin) Length = 756 Score = 37.0 bits (84), Expect = 0.048 Identities = 38/106 (35%), Positives = 40/106 (37%), Gaps = 10/106 (9%) Frame = -1 Query: 618 SPPGSSWPGKQRSTGWTRGPGTTASC---CSLEAWPSPGAKTP-STGLGTP*KKEGRNRD 451 SPPGS PG G GPG L G P S GL P G D Sbjct: 8 SPPGSEPPGPDPEPGGPDGPGAAQLAPGPAELRLGAPVGGPDPQSPGLDEP--APGAAAD 65 Query: 450 GGAAERL-----LAGGPREAGAVPSHARSHLRGLLRG-EARRPGLR 331 GGA L GGPR+ G RS RG L +A PG R Sbjct: 66 GGARWSAGPAPGLEGGPRDPGPSAPPPRSGPRGQLASPDAPGPGPR 111
>RGS12_HUMAN (O14924) Regulator of G-protein signaling 12 (RGS12)| Length = 1447 Score = 32.7 bits (73), Expect = 0.90 Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 4/112 (3%) Frame = -1 Query: 618 SPPGSSW-PGKQRSTGWTRGPGTTASCCSLEAWPSPGAKTPSTGLGTP*KKEGRNRDGGA 442 S PG W P ++ S + PG+ +S PG K+PS TP ++G A Sbjct: 1255 SQPGEQWEPVQESSDSPSTSPGSASSPPGPPGTTPPGQKSPSGPFCTPQSPVSLAQEGTA 1314 Query: 441 AERLLAGGPREAGAVPSHARSHLRGLL---RGEARRPGLRVVDAGEPPAQVP 295 EAG + + H+ L G+ P ++ P +VP Sbjct: 1315 QIWKRQSQEVEAGGIQTVEDEHVAELTLMGEGDISSPNSTLLPPPSTPQEVP 1366
>Y1561_METJA (Q58956) Hypothetical protein MJ1561| Length = 553 Score = 32.3 bits (72), Expect = 1.2 Identities = 13/53 (24%), Positives = 31/53 (58%) Frame = -2 Query: 419 VQGKLELSHLTPGVTYEVFFEVKLDDPAYGWSTPVNLRLKFPDGTIQQQKENL 261 ++GK +SHL PG + V+F++ +D+ A +++++ + + + KE + Sbjct: 76 IKGKATISHLNPGESDTVYFKLHVDENAPSRDYEIDVKVSYDEINKEDGKETI 128
>SPIC_HUMAN (Q8N5J4) Transcription factor Spi-C| Length = 248 Score = 31.6 bits (70), Expect = 2.0 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Frame = -2 Query: 347 DDPAYGWSTPVNLRLKFP-DGTIQQQKENLQEKPRGKWLQVKVGEVKPHKGQNGEVEISM 171 ++P Y W T +N F +G I Q +N+ E Q+ + KG G ++ + Sbjct: 60 EEPVYNWRTVINSAADFYFEGNIHQSLQNITEN------QLVQPTLLQQKGGKGRKKLRL 113 Query: 170 FEY 162 FEY Sbjct: 114 FEY 116
>SPEG_HUMAN (Q15772) Striated muscle preferentially expressed protein kinase| (EC 2.7.11.1) (Aortic preferentially expressed protein 1) (APEG-1) Length = 3223 Score = 31.6 bits (70), Expect = 2.0 Identities = 32/115 (27%), Positives = 40/115 (34%), Gaps = 8/115 (6%) Frame = -1 Query: 615 PPGSSWPGKQRSTGWTRGPGTTASCCSLEAWPSPGAKTPSTGLGTP*KKEGRNRDGGAAE 436 PP + P + R A W +PG + G P E +NR G AE Sbjct: 613 PPAADPPEARTKAPPGRKREPPAQAVRFLPWATPGLE----GAAVPQTLE-KNRAGPEAE 667 Query: 435 RLLAGGPREAGAVPSHARSHLRGLLRGEARRPGL--------RVVDAGEPPAQVP 295 + L GP E G R R +G RP V AGE P + P Sbjct: 668 KRLRRGPEEDGPWGPWDRRGARSQGKGRRARPTSPELESSDDSYVSAGEEPLEAP 722
>HME2_CHICK (Q05917) Homeobox protein engrailed-2 (Gg-En-2)| Length = 288 Score = 31.6 bits (70), Expect = 2.0 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 4/68 (5%) Frame = -1 Query: 594 GKQRSTGWTRG----PGTTASCCSLEAWPSPGAKTPSTGLGTP*KKEGRNRDGGAAERLL 427 G+++ G T G PG + A P+PGA P G G GR +GG A L Sbjct: 62 GRRKEAGGTAGEPRRPGAESRRSPAAAAPAPGAPVPGGGGGGGGGSPGRG-EGGPAALAL 120 Query: 426 AGGPREAG 403 G ++ G Sbjct: 121 HGAAKKGG 128
>Y1506_METJA (Q58901) Hypothetical protein MJ1506| Length = 437 Score = 31.2 bits (69), Expect = 2.6 Identities = 13/51 (25%), Positives = 30/51 (58%) Frame = -2 Query: 419 VQGKLELSHLTPGVTYEVFFEVKLDDPAYGWSTPVNLRLKFPDGTIQQQKE 267 ++GK +SHL PG + V+F++ +D+ A +++++ + + + KE Sbjct: 117 IKGKATISHLNPGESDTVYFKLHVDENAPSRDYRIDVKVSYDEVDKEDGKE 167
>FOXD2_HUMAN (O60548) Forkhead box protein D2 (Forkhead-related protein FKHL17)| (Forkhead-related transcription factor 9) (FREAC-9) Length = 497 Score = 30.8 bits (68), Expect = 3.4 Identities = 23/70 (32%), Positives = 28/70 (40%) Frame = -1 Query: 519 SPGAKTPSTGLGTP*KKEGRNRDGGAAERLLAGGPREAGAVPSHARSHLRGLLRGEARRP 340 SP A + GL T ++G D G GG AG PS + H+ G G A P Sbjct: 374 SPPAAGTAAGLPTALLRQGLKTDAGGGA---GGGGAGAGQRPSFSIDHIMGHGGGGAAPP 430 Query: 339 GLRVVDAGEP 310 G G P Sbjct: 431 GAGEGSPGPP 440
>CEZ2_MOUSE (Q8R554) Zinc finger A20 domain-containing protein ? (EC 3.-.-.-)| (Zinc finger protein Cezanne 2) (OTU domain-containing protein 7) Length = 926 Score = 30.8 bits (68), Expect = 3.4 Identities = 34/123 (27%), Positives = 47/123 (38%), Gaps = 11/123 (8%) Frame = -1 Query: 621 RSPPGSSWPGKQRSTGWTRGPGTTASCCSLEAWPSPG------AKTPSTGLGTP*KKEGR 460 R P PG +R++ T L+ PSPG A + G +P Sbjct: 697 RRPEAEGAPGPERASPGPTAAQPTQLVLKLKERPSPGTGASARAARAAGGAASP------ 750 Query: 459 NRDGGAAERLL--AGGPREAGAVPSHARS---HLRGLLRGEARRPGLRVVDAGEPPAQVP 295 GG A R GGP + P+ AR H++ R EA P V A P A P Sbjct: 751 -GPGGGARRAAPGTGGPTPGRSPPAPARQSVIHVQAAARDEACAP---TVGALRPCATYP 806 Query: 294 RRH 286 +++ Sbjct: 807 QQN 809
>ZNT1_MOUSE (Q60738) Zinc transporter 1 (ZnT-1) (Solute carrier family 30| member 1) Length = 503 Score = 30.8 bits (68), Expect = 3.4 Identities = 15/41 (36%), Positives = 21/41 (51%) Frame = -1 Query: 405 GAVPSHARSHLRGLLRGEARRPGLRVVDAGEPPAQVPRRHD 283 GA H+ H G L AR+ G V+AG PP + P + + Sbjct: 143 GAGHGHSHGHGHGHLAKGARKAGRAGVEAGAPPGRAPDQEE 183
>5E5_RAT (Q63003) 5E5 antigen| Length = 825 Score = 30.8 bits (68), Expect = 3.4 Identities = 38/123 (30%), Positives = 43/123 (34%), Gaps = 7/123 (5%) Frame = -1 Query: 627 KIRSPPGSSWPGKQRSTGWTRGPGTTASCCSLEAWPSPGAKTPSTGLGTP*KKEGRNRDG 448 ++ SP W G + GW GP E PSPG + P K+ GR Sbjct: 401 RVESP--REWGGTESPRGWEAGP--------REWGPSPGGRGDGP-RRRPRKRRGRKGRM 449 Query: 447 G------AAERLLAGGP-REAGAVPSHARSHLRGLLRGEARRPGLRVVDAGEPPAQVPRR 289 G A GGP EAGA S G RG AR P Q RR Sbjct: 450 GRQLETTATSASATGGPAEEAGA--SAPEGQAGGGPRGRAR----------GPRQQARRR 497 Query: 288 HDP 280 H P Sbjct: 498 HGP 500
>AF17_HUMAN (P55198) Protein AF-17| Length = 1093 Score = 30.4 bits (67), Expect = 4.5 Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 9/86 (10%) Frame = -1 Query: 597 PGKQRS---TGWTRGPGTTASCCSLEAWPSPGAKTPSTGL------GTP*KKEGRNRDGG 445 PG +S TG GT +L A P P +TP TGL + + G R G Sbjct: 424 PGDYKSPHVTGSGASAGTHKRMPALSATPVPADETPETGLKEKKHKASKRSRHGPGRPKG 483 Query: 444 AAERLLAGGPREAGAVPSHARSHLRG 367 + + GGP A PS + L G Sbjct: 484 SRNKEGTGGP----AAPSLPSAQLAG 505
>IP3KC_RAT (Q80ZG2) Inositol-trisphosphate 3-kinase C (EC 2.7.1.127) (Inositol| 1,4,5-trisphosphate 3-kinase C) (IP3K-C) Length = 678 Score = 30.4 bits (67), Expect = 4.5 Identities = 14/27 (51%), Positives = 18/27 (66%) Frame = -1 Query: 411 EAGAVPSHARSHLRGLLRGEARRPGLR 331 EAGA+P+ AR L L G R+PGL+ Sbjct: 14 EAGALPAEARMGLEALRGGRRRQPGLQ 40
>IP3KC_MOUSE (Q7TS72) Inositol-trisphosphate 3-kinase C (EC 2.7.1.127) (Inositol| 1,4,5-trisphosphate 3-kinase C) (IP3K-C) Length = 678 Score = 30.4 bits (67), Expect = 4.5 Identities = 14/27 (51%), Positives = 18/27 (66%) Frame = -1 Query: 411 EAGAVPSHARSHLRGLLRGEARRPGLR 331 EAGA+P+ AR L L G R+PGL+ Sbjct: 14 EAGALPAEARMGLEALRGGRRRQPGLQ 40
>CO9A3_CHICK (P32017) Collagen alpha-3(IX) chain precursor| Length = 675 Score = 30.4 bits (67), Expect = 4.5 Identities = 33/114 (28%), Positives = 45/114 (39%), Gaps = 7/114 (6%) Frame = -1 Query: 624 IRSPPGSSWPGKQRSTGWTRGPGTTASCCSLEAWPSPGAKTPSTGLGTP*KK--EGRNRD 451 +R P G+ G PG T S A PG + P+ LG P + G D Sbjct: 540 LRKPLSPGMTGRPGPAGPPGPPGATGSVGHPGARGPPGYRGPTGELGDPGPRGDTGEKGD 599 Query: 450 GGAAERLLAG-----GPREAGAVPSHARSHLRGLLRGEARRPGLRVVDAGEPPA 304 G A + + G GP+ VP +++ G +GE PG D G P A Sbjct: 600 KGPAGQGIDGPDGDQGPQGLPGVPGISKNGRDG-AQGEPGLPG----DPGTPGA 648
>RIMM_MYCTU (P66653) Probable 16S rRNA-processing protein rimM| Length = 176 Score = 30.4 bits (67), Expect = 4.5 Identities = 18/42 (42%), Positives = 24/42 (57%) Frame = -2 Query: 419 VQGKLELSHLTPGVTYEVFFEVKLDDPAYGWSTPVNLRLKFP 294 V G++ SH GVT EV E++ DDPA ++ LR K P Sbjct: 4 VVGRVVKSH---GVTGEVVVEIRTDDPADRFAPGTRLRAKGP 42
>RIMM_MYCBO (P66654) Probable 16S rRNA-processing protein rimM| Length = 176 Score = 30.4 bits (67), Expect = 4.5 Identities = 18/42 (42%), Positives = 24/42 (57%) Frame = -2 Query: 419 VQGKLELSHLTPGVTYEVFFEVKLDDPAYGWSTPVNLRLKFP 294 V G++ SH GVT EV E++ DDPA ++ LR K P Sbjct: 4 VVGRVVKSH---GVTGEVVVEIRTDDPADRFAPGTRLRAKGP 42
>GATA6_RAT (P46153) Transcription factor GATA-6 (GATA-binding factor 6)| (DNA-binding protein GATA-GT2) Length = 441 Score = 30.4 bits (67), Expect = 4.5 Identities = 30/104 (28%), Positives = 35/104 (33%), Gaps = 6/104 (5%) Frame = -1 Query: 609 GSSWPGKQRSTGWTRGPGTTASCCSLE-AWPSPGAKTPSTGLGTP*KKEGRNRDGGAAER 433 GS PG G GP A WP A +P G GG A Sbjct: 49 GSMLPGLPYLQGAGSGPSNHAGGAGAHPGWPQASADSPPYG-------------GGGAAG 95 Query: 432 LLAGGPREAGAVPSHARSHL-----RGLLRGEARRPGLRVVDAG 316 A GP AG+ +HA + + G AR PG V G Sbjct: 96 GGAAGPGGAGSATAHASARFPYSPSPPMANGAARDPGGYVAAGG 139
>ACSA_NITEU (Q82SI5) Acetyl-coenzyme A synthetase (EC 6.2.1.1) (Acetate--CoA| ligase) (Acyl-activating enzyme) Length = 655 Score = 30.4 bits (67), Expect = 4.5 Identities = 13/38 (34%), Positives = 19/38 (50%) Frame = -3 Query: 571 DERTRHNCFMLFPRGLAITWSEDPKYWTWHPLKEGRPE 458 D T H+ + G ITW + +W WH L G+P+ Sbjct: 215 DTATVHSVIVFRHTGTGITWQPERDHW-WHDLIAGQPD 251
>CO5A1_RAT (Q9JI03) Collagen alpha-1(V) chain precursor| Length = 1840 Score = 30.0 bits (66), Expect = 5.8 Identities = 28/95 (29%), Positives = 38/95 (40%), Gaps = 2/95 (2%) Frame = -1 Query: 615 PPGSSWPGKQRSTGWTRGPGTTASCCSLEAWPSPGAKTPSTGLGTP*KKEGRNRDGGAAE 436 PPG++ P Q RGP + P P P T L P + G D G+ Sbjct: 484 PPGTTGPTGQMGDPGERGPPGRPGLPGADGLPGP----PGTMLMLP-FRFGGGGDAGSKG 538 Query: 435 RLLAGGPREAGAVPSHARSHLRGLL--RGEARRPG 337 +++ +A A+ AR LRG G RPG Sbjct: 539 PMVSAQESQAQAILQQARLALRGPAGPMGLTGRPG 573
>CO5A1_MOUSE (O88207) Collagen alpha-1(V) chain precursor| Length = 1838 Score = 30.0 bits (66), Expect = 5.8 Identities = 28/95 (29%), Positives = 38/95 (40%), Gaps = 2/95 (2%) Frame = -1 Query: 615 PPGSSWPGKQRSTGWTRGPGTTASCCSLEAWPSPGAKTPSTGLGTP*KKEGRNRDGGAAE 436 PPG++ P Q RGP + P P P T L P + G D G+ Sbjct: 482 PPGTTGPTGQMGDPGERGPPGRPGLPGADGLPGP----PGTMLMLP-FRFGGGGDAGSKG 536 Query: 435 RLLAGGPREAGAVPSHARSHLRGLL--RGEARRPG 337 +++ +A A+ AR LRG G RPG Sbjct: 537 PMVSAQESQAQAILQQARLALRGPAGPMGLTGRPG 571
>LON_BRECH (P36772) ATP-dependent protease La (EC 3.4.21.53)| Length = 779 Score = 29.6 bits (65), Expect = 7.6 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 12/75 (16%) Frame = -2 Query: 359 EVKLDDP------AYGWSTPVNLRLKFPDGTIQQQKENLQEKPRGKWLQ------VKVGE 216 EV +++P + G V LK P+GTI+ E LQ ++LQ V + Sbjct: 56 EVHIEEPDAEQIYSIGTVARVKQMLKLPNGTIRVLVEGLQRAKIEEYLQKEDYFVVSITY 115 Query: 215 VKPHKGQNGEVEISM 171 +K K + EVE M Sbjct: 116 LKEEKAEENEVEALM 130
>NUMBL_MOUSE (O08919) Numb-like protein| Length = 604 Score = 29.6 bits (65), Expect = 7.6 Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 2/74 (2%) Frame = -1 Query: 495 TGLGTP*KKEG--RNRDGGAAERLLAGGPREAGAVPSHARSHLRGLLRGEARRPGLRVVD 322 +G G P ++E + + AA +A GP + G V + G +GEA P V Sbjct: 228 SGGGRPAEREAGDKKKAEAAAAPAVAPGPAQPGHVSPTPATTSPGE-KGEAGTP----VA 282 Query: 321 AGEPPAQVPRRHDP 280 AG A +PRRH P Sbjct: 283 AGTTAAAIPRRHAP 296
>CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long-chain collagen)| (LC collagen) Length = 2944 Score = 29.6 bits (65), Expect = 7.6 Identities = 34/109 (31%), Positives = 38/109 (34%), Gaps = 5/109 (4%) Frame = -1 Query: 621 RSPPGSSWPGKQRSTG--WTRGP-GTTASCCSLEAWPSPGAKTPSTGLGTP*KKEGRNRD 451 R PPG PG G RGP G T PG K G P R RD Sbjct: 1574 RGPPGLVLPGDPGPKGDPGDRGPIGLTGRAGPPGDSGPPGEKGDPGRPGPPGPVGPRGRD 1633 Query: 450 GGAAERLLAGGPREAGAVPSHARSHLRGL--LRGEARRPGLRVVDAGEP 310 G E+ G P + G LRG +RG G D G+P Sbjct: 1634 GEVGEKGDEGPPGDPGLPGKAGERGLRGAPGVRGPVGEKG----DQGDP 1678
>CF010_HUMAN (Q5SRN2) Protein C6orf10| Length = 563 Score = 29.6 bits (65), Expect = 7.6 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 5/68 (7%) Frame = -2 Query: 371 EVFFEVKLDDPAYGWSTPVNLRLKF-----PDGTIQQQKENLQEKPRGKWLQVKVGEVKP 207 ++ EVK+D A G +LK P G Q K+++ + PRG+ QVK E Sbjct: 287 KIGMEVKVDSDA-GIPKRQETQLKISEMSIPQGQGAQIKKSVSDVPRGQESQVKKSESGV 345 Query: 206 HKGQNGEV 183 KGQ +V Sbjct: 346 PKGQEAQV 353
>NUMBL_HUMAN (Q9Y6R0) Numb-like protein (Numb-R)| Length = 609 Score = 29.6 bits (65), Expect = 7.6 Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 2/74 (2%) Frame = -1 Query: 495 TGLGTP*KKEG--RNRDGGAAERLLAGGPREAGAVPSHARSHLRGLLRGEARRPGLRVVD 322 +G G P ++E + + AA +A GP + G V + G +GEA P V Sbjct: 228 SGGGRPAEREAPDKKKAEAAAAPTVAPGPAQPGHVSPTPATTSPGE-KGEAGTP----VA 282 Query: 321 AGEPPAQVPRRHDP 280 AG A +PRRH P Sbjct: 283 AGTTAAAIPRRHAP 296
>EDEM1_HUMAN (Q92611) ER degradation-enhancing alpha-mannosidase-like 1| Length = 657 Score = 29.3 bits (64), Expect = 10.0 Identities = 31/104 (29%), Positives = 42/104 (40%), Gaps = 13/104 (12%) Frame = -1 Query: 627 KIRSPPGSSWP--------GKQRSTGWTRGPGTTASCCSLEA--WPSPGAKTPSTG---L 487 ++RSP G + P G W + PGT A+ +A P PG P+ L Sbjct: 45 RLRSPDGPASPTSGPVGRPGGVSGPSWLQPPGTGAAQSPRKAPRRPGPGMCGPANWGYVL 104 Query: 486 GTP*KKEGRNRDGGAAERLLAGGPREAGAVPSHARSHLRGLLRG 355 G GR R E+ R +GA P R+ +R L RG Sbjct: 105 G------GRGRGPDEYEK------RYSGAFPPQLRAQMRDLARG 136
>ADH4_MOUSE (Q9QYY9) Alcohol dehydrogenase 4 (EC 1.1.1.1) (Alcohol| dehydrogenase class II) (Alcohol dehydrogenase II) (ADH2) Length = 376 Score = 29.3 bits (64), Expect = 10.0 Identities = 13/24 (54%), Positives = 17/24 (70%) Frame = -3 Query: 94 FGFGCVLLPAIIGCCLSTALRSVS 23 FG GCV L AIIGC ++ A R ++ Sbjct: 202 FGLGCVGLSAIIGCKIAGASRIIA 225
>CO6A2_HUMAN (P12110) Collagen alpha-2(VI) chain precursor| Length = 1019 Score = 29.3 bits (64), Expect = 10.0 Identities = 30/108 (27%), Positives = 40/108 (37%), Gaps = 6/108 (5%) Frame = -1 Query: 621 RSPPGSSWPGKQRSTGWTRGPGTTASCCSLEAWPS----PGAKTPSTGLGTP*KKEGRNR 454 + PGS P ++ GP A + PG + P LG P K+ R Sbjct: 432 KGSPGSDGPKGEKGDPGPEGPRGLAGEVGNKGAKGDRGLPGPRGPQGALGEPGKQGSRGD 491 Query: 453 DGGAAERLLAG--GPREAGAVPSHARSHLRGLLRGEARRPGLRVVDAG 316 G A R +G GP+ P + RG GE PG R + G Sbjct: 492 PGDAGPRGDSGQPGPKGDPGRPGFSYPGPRG-APGEKGEPGPRGPEGG 538 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 87,458,460 Number of Sequences: 219361 Number of extensions: 1957871 Number of successful extensions: 6730 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 6194 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6718 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5767334219 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
