ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal4n12 |
|---|---|
| Clone Library Name | barley_pub |
>MED20_YEAST (P34162) RNA polymerase II mediator complex subunit 20 (Suppressor| of RNA polymerase B 2) (Hyper-recombination suppressor protein 2) Length = 210 Score = 31.2 bits (69), Expect = 0.67 Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 10/94 (10%) Frame = +1 Query: 61 SINKASYRLDLKNIPIAASRLQHTIIQCHKHASAQQQHLVPQVDTSKTNQLLLRLP---- 228 SI+ +YR +KN+P S+L ++I H +Q L+ T +P Sbjct: 36 SIDFRTYRCSIKNLPADVSKLMYSIT---FHHHGRQTVLIKDNSAMVTTAAAADIPPALV 92 Query: 229 --GFCWGLPKT-KTVLVSKAQN---QLSMLAGDA 312 G G+P++ T+L SK N Q ++ GDA Sbjct: 93 FNGSSTGVPESIDTILSSKLSNIWMQRQLIKGDA 126
>MLL3_HUMAN (Q8NEZ4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog| (Histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3) (EC 2.1.1.43) (Homologous to ALR protein) Length = 4911 Score = 30.4 bits (67), Expect = 1.1 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = +3 Query: 162 PTTAPSSPSRHFKNKPTFIAPSWLLLGASKDQDGT 266 P T P+SPS H + P FIAP +L + + + T Sbjct: 2940 PPTLPASPSNHVSSLPPFIAPPGRVLDNAMNSNVT 2974
>IRS1_RAT (P35570) Insulin receptor substrate 1 (IRS-1) (pp185)| Length = 1235 Score = 30.0 bits (66), Expect = 1.5 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 1/63 (1%) Frame = +1 Query: 145 HKHASAQQQHLVPQVDT-SKTNQLLLRLPGFCWGLPKTKTVLVSKAQNQLSMLAGDAELL 321 H H A Q HL +VDT ++TN L R G PK T+ + Q Q + L Sbjct: 826 HPHHHALQPHLPRKVDTAAQTNSRLARPTRLSLGDPKASTLPRVREQQQQQQQQQQSSLH 885 Query: 322 EPQ 330 P+ Sbjct: 886 PPE 888
>FMT_MYCLE (Q9CCQ0) Methionyl-tRNA formyltransferase (EC 2.1.2.9)| Length = 318 Score = 30.0 bits (66), Expect = 1.5 Identities = 12/27 (44%), Positives = 14/27 (51%) Frame = -2 Query: 248 GSPQQKPGRRNKSWFVFEVSTWGTRCC 168 G P +P R N FV E+S W CC Sbjct: 59 GIPLLRPARPNSPVFVSELSEWAPECC 85
>FTSH_CYACA (O19922) Cell division protein ftsH homolog (EC 3.4.24.-)| Length = 614 Score = 30.0 bits (66), Expect = 1.5 Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 5/94 (5%) Frame = +1 Query: 46 REILSSINKASYRLDLKNIPIAASRLQHTIIQCHKHASAQQQHLVPQVDTSKTNQLLLR- 222 +EI SI+K L+ P+A SR++ +I H+ A +P D + L+ R Sbjct: 402 KEIEDSIDKII--AGLEGSPLADSRIKR-LIAYHEAGHAVAATFLPHHDPVQKVTLIPRR 458 Query: 223 -LPGFCWGLPKTKTVLVSKAQ---NQLSMLAGDA 312 G W LP LVSK+Q ++ LAG A Sbjct: 459 QAKGLTWFLPNDDQFLVSKSQILSKIIAALAGRA 492
>E13K_TOBAC (P52398) Glucan endo-1,3-beta-glucosidase, acidic isoform GL161| precursor (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase) ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase) Length = 331 Score = 30.0 bits (66), Expect = 1.5 Identities = 18/68 (26%), Positives = 33/68 (48%) Frame = +2 Query: 38 PNKEKS*VASTRPVIGWI*RTFRLRHPDYSTQLFNVTSMLQPNNST*FPKSTLQKQTNFY 217 PN++ +A++ GW+ R P + ++ + + P N+ + + LQ N Y Sbjct: 66 PNQDLEALANSSIANGWVQDNIRSHFPYVKFKYISIGNKVSPTNNDQYSEFLLQAMKNVY 125 Query: 218 CAFLASAG 241 A LA+AG Sbjct: 126 NA-LAAAG 132
>LIMK1_DROME (Q8IR79) LIM domain kinase 1 (EC 2.7.11.1) (LIMK-1) (dLIMK)| Length = 1257 Score = 29.3 bits (64), Expect = 2.5 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%) Frame = +3 Query: 153 CFSPTTA--PSSPSRHFKNKPTFIAPSWLLLGASKDQDGTCEQSSKST 290 C SPT + P SP++H + T L A+ Q +QSSK+T Sbjct: 1124 CVSPTRSSRPGSPTKHLAQRHTAATAQRLTNAAATHQQQHQQQSSKTT 1171
>IRS1_CERAE (Q28224) Insulin receptor substrate 1 (IRS-1)| Length = 1251 Score = 28.9 bits (63), Expect = 3.3 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%) Frame = +1 Query: 145 HKHASAQQQHLVPQVDT-SKTNQLLLRLPGFCWGLPKTKTVLVSKAQNQ 288 H H Q HL +VDT ++TN L R G PK T+ ++ Q Q Sbjct: 829 HPHHQVLQPHLPRKVDTAAQTNSRLARPTRLSLGDPKASTLPRAREQQQ 877
>KR105_HUMAN (P60370) Keratin-associated protein 10-5 (Keratin-associated| protein 10.5) (High sulfur keratin-associated protein 10.5) (Keratin-associated protein 18-5) (Keratin-associated protein 18.5) Length = 271 Score = 28.9 bits (63), Expect = 3.3 Identities = 16/48 (33%), Positives = 20/48 (41%) Frame = +3 Query: 138 SMSQACFSPTTAPSSPSRHFKNKPTFIAPSWLLLGASKDQDGTCEQSS 281 S + +C P SSP + P P L SKD C+QSS Sbjct: 68 SCTPSCCQPACCASSPCQQACCVPVCCKPVCCLPTCSKDSSSCCQQSS 115
>IRS1_HUMAN (P35568) Insulin receptor substrate 1 (IRS-1)| Length = 1242 Score = 28.9 bits (63), Expect = 3.3 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%) Frame = +1 Query: 145 HKHASAQQQHLVPQVDT-SKTNQLLLRLPGFCWGLPKTKTVLVSKAQNQ 288 H H Q HL +VDT ++TN L R G PK T+ ++ Q Q Sbjct: 831 HPHHQVLQPHLPRKVDTAAQTNSRLARPTRLSLGDPKASTLPRAREQQQ 879
>E13C_TOBAC (P23432) Glucan endo-1,3-beta-glucosidase precursor (EC 3.2.1.39)| ((1->3)-beta-glucan endohydrolase) ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase) Length = 351 Score = 28.1 bits (61), Expect = 5.7 Identities = 18/71 (25%), Positives = 34/71 (47%) Frame = +2 Query: 29 LPKPNKEKS*VASTRPVIGWI*RTFRLRHPDYSTQLFNVTSMLQPNNST*FPKSTLQKQT 208 L PN++ +A++ GW+ R P + ++ + + P+N+ + + L Sbjct: 87 LDVPNQDLEALANSSIANGWVQDNIRSHFPYVKFKYISIGNEVSPSNNGQYSQFLLHAME 146 Query: 209 NFYCAFLASAG 241 N Y A LA+AG Sbjct: 147 NVYNA-LAAAG 156
>YLAA_BACSU (O07625) Hypothetical protein ylaA| Length = 646 Score = 28.1 bits (61), Expect = 5.7 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 6/47 (12%) Frame = +1 Query: 94 KNIPIAASRLQHTIIQ------CHKHASAQQQHLVPQVDTSKTNQLL 216 KNI +A SRLQH I+ K + Q +V D+SKT + + Sbjct: 509 KNISMANSRLQHQILSIFDARGSEKKKKSSQGDMVMYTDSSKTYEFV 555
>E13D_TOBAC (P23433) Glucan endo-1,3-beta-glucosidase precursor (EC 3.2.1.39)| ((1->3)-beta-glucan endohydrolase) ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase) Length = 351 Score = 27.7 bits (60), Expect = 7.4 Identities = 18/71 (25%), Positives = 33/71 (46%) Frame = +2 Query: 29 LPKPNKEKS*VASTRPVIGWI*RTFRLRHPDYSTQLFNVTSMLQPNNST*FPKSTLQKQT 208 L PN++ +A++ GW+ R P + ++ + + P N+ + + L Sbjct: 87 LEVPNQDLEALANSSIANGWVQDNIRSHFPYVKFKYISIGNEVSPTNNGQYSQFLLHAMK 146 Query: 209 NFYCAFLASAG 241 N Y A LA+AG Sbjct: 147 NVYNA-LAAAG 156
>IRS1_MOUSE (P35569) Insulin receptor substrate 1 (IRS-1)| Length = 1233 Score = 27.3 bits (59), Expect = 9.7 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Frame = +1 Query: 145 HKHASAQQQHLVPQVDT-SKTNQLLLRLPGFCWGLPKTKTVLVSKAQNQ 288 H H Q HL +VDT ++TN L R G PK T+ + Q Q Sbjct: 826 HPHHHVLQPHLPRKVDTAAQTNSRLARPTRLSLGDPKASTLPRVREQQQ 874
>MUTS_BACHD (Q9KAC0) DNA mismatch repair protein mutS| Length = 865 Score = 27.3 bits (59), Expect = 9.7 Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 10/80 (12%) Frame = +1 Query: 88 DLKNIPIAASRLQHTIIQCHKHASAQQQHL----------VPQVDTSKTNQLLLRLPGFC 237 D+KN+ ++A Q T++ HK Q +P V T + LL L G Sbjct: 732 DVKNVHVSAVEEQGTVVFLHKVVDGQADRSYGIYVAELAGLPNVVTERAETLLAELEGEK 791 Query: 238 WGLPKTKTVLVSKAQNQLSM 297 + K V + QLS+ Sbjct: 792 EIVASEKEVASTNEPTQLSL 811
>ZEP1_MOUSE (Q03172) Zinc finger protein 40 (Transcription factor| alphaA-CRYBP1) (Alpha A-crystallin-binding protein I) (Alpha A-CRYBP1) Length = 2688 Score = 27.3 bits (59), Expect = 9.7 Identities = 17/58 (29%), Positives = 27/58 (46%) Frame = +1 Query: 109 AASRLQHTIIQCHKHASAQQQHLVPQVDTSKTNQLLLRLPGFCWGLPKTKTVLVSKAQ 282 + + + QC H + Q HLVP++ S+ NQ L GF L T+ +K + Sbjct: 269 STQKSEQVAAQCVSHLYSSQDHLVPKL--SQQNQQLPGHLGFTGSLTNLHTLESTKLE 324 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,369,073 Number of Sequences: 219361 Number of extensions: 916698 Number of successful extensions: 2793 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2553 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2788 length of database: 80,573,946 effective HSP length: 87 effective length of database: 61,489,539 effective search space used: 1475748936 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
