ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal5c03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_479079.1| Oryza sativa (japonica cultivar-group), mRNA 64 7e-07
2dbj|AK101099.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 7e-07
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 54 7e-04
4dbj|AP005809.4| Oryza sativa (japonica cultivar-group) genomic D... 54 7e-04
5dbj|AP005175.4| Oryza sativa (japonica cultivar-group) genomic D... 54 7e-04
6gb|AC083817.19|AC083817 Mus musculus 1 BAC RP23-470G12 (Roswell ... 44 0.66
7gb|AC087040.6|AC087040 Mus musculus 1 BAC RP23-269M3 (RPCI Mouse... 44 0.66
8gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 2.6
9gb|AC135563.5| Oryza sativa chromosome 3 BAC OSJNBb0015I02 genom... 42 2.6
10gb|AC123796.2| Mus musculus BAC clone RP24-320P9 from chromosome... 42 2.6
11gb|AC116731.9| Mus musculus chromosome 8, clone RP23-346D17, com... 42 2.6
12emb|BX908733.14| Zebrafish DNA sequence from clone CH211-190N7 i... 42 2.6
13gb|AC129416.1| Homo sapiens 12 BAC RP11-464G3 (Roswell Park Canc... 42 2.6
14gb|AC091005.9| Homo sapiens chromosome 15, clone RP11-1008C21, c... 42 2.6
15dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.6
16gb|AC148599.2| Xenopus tropicalis clone CH216-2G20, complete seq... 42 2.6
17emb|BX649373.4| Zebrafish DNA sequence from clone CH211-270E10 i... 42 2.6
18gb|AC007447.6|AC007447 Homo sapiens, clone hRPK.76_A_1, complete... 42 2.6
19emb|AL732530.6| Mouse DNA sequence from clone RP23-102I12 on chr... 42 2.6 
>ref|XM_479079.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2300

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                               
Query: 290 tgctctccaagcattcaagtccaagaatgattgcaggtgatctccagtcaga 341
           |||||||||||||||||||||| ||||||||||  |||| ||||||| ||||
Sbjct: 510 tgctctccaagcattcaagtcccagaatgattgatggtgctctccagccaga 459
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>dbj|AK101099.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033025A03, full
           insert sequence
          Length = 2306

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                               
Query: 290 tgctctccaagcattcaagtccaagaatgattgcaggtgatctccagtcaga 341
           |||||||||||||||||||||| ||||||||||  |||| ||||||| ||||
Sbjct: 516 tgctctccaagcattcaagtcccagaatgattgatggtgctctccagccaga 465
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                               
Query: 387      ctgtgattcttcaccatggcatgttccatcatcctgatagaaggcca 433
                ||||||||||||||||| || || |||||||| |||| |||||||||
Sbjct: 24667622 ctgtgattcttcaccatagcttgatccatcattctgacagaaggcca 24667576



 Score = 44.1 bits (22), Expect = 0.66
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 290      tgctctccaagcattcaagtcc 311
                ||||||||||||||||||||||
Sbjct: 24667888 tgctctccaagcattcaagtcc 24667867
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>dbj|AP005809.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBb0039M16
          Length = 133229

 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                             
Query: 387    ctgtgattcttcaccatggcatgttccatcatcctgatagaaggcca 433
              ||||||||||||||||| || || |||||||| |||| |||||||||
Sbjct: 123689 ctgtgattcttcaccatagcttgatccatcattctgacagaaggcca 123643



 Score = 44.1 bits (22), Expect = 0.66
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 290    tgctctccaagcattcaagtcc 311
              ||||||||||||||||||||||
Sbjct: 123955 tgctctccaagcattcaagtcc 123934
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>dbj|AP005175.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBb0040H10
          Length = 132919

 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                            
Query: 387   ctgtgattcttcaccatggcatgttccatcatcctgatagaaggcca 433
             ||||||||||||||||| || || |||||||| |||| |||||||||
Sbjct: 23559 ctgtgattcttcaccatagcttgatccatcattctgacagaaggcca 23513



 Score = 44.1 bits (22), Expect = 0.66
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 290   tgctctccaagcattcaagtcc 311
             ||||||||||||||||||||||
Sbjct: 23825 tgctctccaagcattcaagtcc 23804
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>gb|AC083817.19|AC083817 Mus musculus 1 BAC RP23-470G12 (Roswell Park Cancer Institute Mouse
             BAC) complete sequence
          Length = 204950

 Score = 44.1 bits (22), Expect = 0.66
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 655   ctgaaatctcaacaaattagtataag 680
             |||||| |||||||||||||||||||
Sbjct: 65813 ctgaaaactcaacaaattagtataag 65788
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>gb|AC087040.6|AC087040 Mus musculus 1 BAC RP23-269M3 (RPCI Mouse BAC) complete sequence
          Length = 142488

 Score = 44.1 bits (22), Expect = 0.66
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 655   ctgaaatctcaacaaattagtataag 680
             |||||| |||||||||||||||||||
Sbjct: 19890 ctgaaaactcaacaaattagtataag 19915
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 644      attatgaaatcctgaaatctc 664
                |||||||||||||||||||||
Sbjct: 33331334 attatgaaatcctgaaatctc 33331354
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>gb|AC135563.5| Oryza sativa chromosome 3 BAC OSJNBb0015I02 genomic sequence, complete
             sequence
          Length = 122815

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 644   attatgaaatcctgaaatctc 664
             |||||||||||||||||||||
Sbjct: 87850 attatgaaatcctgaaatctc 87870
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>gb|AC123796.2| Mus musculus BAC clone RP24-320P9 from chromosome 8, complete sequence
          Length = 156593

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 465   aaatcaaagacagcttagtagataa 489
             |||||||||||||||||| ||||||
Sbjct: 57747 aaatcaaagacagcttagaagataa 57723
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>gb|AC116731.9| Mus musculus chromosome 8, clone RP23-346D17, complete sequence
          Length = 230139

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 465    aaatcaaagacagcttagtagataa 489
              |||||||||||||||||| ||||||
Sbjct: 164385 aaatcaaagacagcttagaagataa 164361
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>emb|BX908733.14| Zebrafish DNA sequence from clone CH211-190N7 in linkage group 22,
             complete sequence
          Length = 153031

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 532   acccattacttataaggaaataaac 556
             |||||||||||| ||||||||||||
Sbjct: 88095 acccattacttaaaaggaaataaac 88071
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>gb|AC129416.1| Homo sapiens 12 BAC RP11-464G3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 139995

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 382   agagactgtgattcttcacca 402
             |||||||||||||||||||||
Sbjct: 24720 agagactgtgattcttcacca 24700
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>gb|AC091005.9| Homo sapiens chromosome 15, clone RP11-1008C21, complete sequence
          Length = 168502

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 713    ttcgtttctatggtcaaacctgagt 737
              |||||||||| ||||||||||||||
Sbjct: 103620 ttcgtttctacggtcaaacctgagt 103596
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 644      attatgaaatcctgaaatctc 664
                |||||||||||||||||||||
Sbjct: 33421844 attatgaaatcctgaaatctc 33421864
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>gb|AC148599.2| Xenopus tropicalis clone CH216-2G20, complete sequence
          Length = 206059

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 279    gtggcatggtgtgctctccaa 299
              |||||||||||||||||||||
Sbjct: 177795 gtggcatggtgtgctctccaa 177775
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>emb|BX649373.4| Zebrafish DNA sequence from clone CH211-270E10 in linkage group 22,
             complete sequence
          Length = 49940

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 532   acccattacttataaggaaataaac 556
             |||||||||||| ||||||||||||
Sbjct: 11582 acccattacttaaaaggaaataaac 11558
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>gb|AC007447.6|AC007447 Homo sapiens, clone hRPK.76_A_1, complete sequence
          Length = 155210

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 382   agagactgtgattcttcacca 402
             |||||||||||||||||||||
Sbjct: 84328 agagactgtgattcttcacca 84308
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>emb|AL732530.6| Mouse DNA sequence from clone RP23-102I12 on chromosome 4, complete
              sequence
          Length = 211998

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 658    aaatctcaacaaattagtataagca 682
              |||||||||||||||| ||||||||
Sbjct: 159258 aaatctcaacaaattaatataagca 159234


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,331,545
Number of Sequences: 3902068
Number of extensions: 6331545
Number of successful extensions: 108390
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 108240
Number of HSP's gapped (non-prelim): 150
length of query: 754
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 731
effective length of database: 17,143,297,704
effective search space: 12531750621624
effective search space used: 12531750621624
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
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