ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal5b20 |
|---|---|
| Clone Library Name | barley_pub |
>RL18_ARATH (P42791) 60S ribosomal protein L18| Length = 187 Score = 199 bits (506), Expect = 3e-51 Identities = 97/116 (83%), Positives = 108/116 (93%) Frame = -3 Query: 492 GKEEKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQLALRAPT 313 GKE+K IAV+VGTITDD+R+ EIPAMKVTALRFTE ARARI AGGECLTFDQLALRAP Sbjct: 73 GKEDK-IAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPL 131 Query: 312 GENTILLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFKV 145 G+NT+LLRGPKN+REAV+HFG APGVPHSH+KPYVR+KGRKFEKARG+R SRGFKV Sbjct: 132 GQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGKRKSRGFKV 187
>RL18_CICAR (O65729) 60S ribosomal protein L18 (Fragment)| Length = 183 Score = 182 bits (463), Expect = 3e-46 Identities = 91/116 (78%), Positives = 102/116 (87%) Frame = -3 Query: 492 GKEEKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQLALRAPT 313 GKE K I VVVG +TDD+R+ ++P +KVTAL+FTETARARI AGGECLTFDQLALR P Sbjct: 70 GKEGK-IGVVVGAVTDDIRVYDVPTIKVTALKFTETARARIQKAGGECLTFDQLALRLPL 128 Query: 312 GENTILLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFKV 145 + T+LLRGPKNAREAV+HFG APGVPHSHTKPYVRSKGRKFEKARGRR SRGF+V Sbjct: 129 TD-TVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFEKARGRRKSRGFRV 183
>RL18_ORENI (P69091) 60S ribosomal protein L18| Length = 187 Score = 166 bits (421), Expect = 2e-41 Identities = 80/115 (69%), Positives = 96/115 (83%) Frame = -3 Query: 492 GKEEKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQLALRAPT 313 G+E K IAVVVGT+TDD+RIQ+IP +K+ ALR T+ AR RI+ AGG+ +TFDQLAL +P Sbjct: 73 GRENK-IAVVVGTVTDDVRIQDIPKLKICALRVTDGARRRILKAGGQVMTFDQLALASPK 131 Query: 312 GENTILLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFK 148 G+ T+LL GP+ ARE RHFGKAPG PHSHTKPYVRSKGRKFE+ARGRR S G+K Sbjct: 132 GQGTVLLSGPRKAREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASCGYK 186
>RL18_OREMO (P69090) 60S ribosomal protein L18| Length = 187 Score = 166 bits (421), Expect = 2e-41 Identities = 80/115 (69%), Positives = 96/115 (83%) Frame = -3 Query: 492 GKEEKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQLALRAPT 313 G+E K IAVVVGT+TDD+RIQ+IP +K+ ALR T+ AR RI+ AGG+ +TFDQLAL +P Sbjct: 73 GRENK-IAVVVGTVTDDVRIQDIPKLKICALRVTDGARRRILKAGGQVMTFDQLALASPK 131 Query: 312 GENTILLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFK 148 G+ T+LL GP+ ARE RHFGKAPG PHSHTKPYVRSKGRKFE+ARGRR S G+K Sbjct: 132 GQGTVLLSGPRKAREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASCGYK 186
>RL18_HUMAN (Q07020) 60S ribosomal protein L18| Length = 187 Score = 166 bits (419), Expect = 4e-41 Identities = 81/115 (70%), Positives = 94/115 (81%) Frame = -3 Query: 492 GKEEKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQLALRAPT 313 G+E K AVVVGTITDD+R+QE+P +KV ALR T AR+RI+ AGG+ LTFDQLAL +P Sbjct: 73 GRENKT-AVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPK 131 Query: 312 GENTILLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFK 148 G T+LL GP+ RE RHFGKAPG PHSHTKPYVRSKGRKFE+ARGRR SRG+K Sbjct: 132 GCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASRGYK 186
>RL18_RAT (P12001) 60S ribosomal protein L18| Length = 187 Score = 164 bits (415), Expect = 1e-40 Identities = 80/115 (69%), Positives = 93/115 (80%) Frame = -3 Query: 492 GKEEKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQLALRAPT 313 G+E K AVVVGTITDD+RI E+P +KV ALR + AR+RI+ AGG+ LTFDQLAL +P Sbjct: 73 GRENKT-AVVVGTITDDVRILEVPKLKVCALRVSSRARSRILKAGGKILTFDQLALESPK 131 Query: 312 GENTILLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFK 148 G T+LL GP+ RE RHFGKAPG PHSHTKPYVRSKGRKFE+ARGRR SRG+K Sbjct: 132 GRGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASRGYK 186
>RL18_MOUSE (P35980) 60S ribosomal protein L18| Length = 187 Score = 164 bits (414), Expect = 2e-40 Identities = 79/115 (68%), Positives = 93/115 (80%) Frame = -3 Query: 492 GKEEKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQLALRAPT 313 G+E K AVVVGT+TDD+RI E+P +KV ALR + AR+RI+ AGG+ LTFDQLAL +P Sbjct: 73 GRENKT-AVVVGTVTDDVRILEVPKLKVCALRVSSRARSRILKAGGKILTFDQLALESPK 131 Query: 312 GENTILLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFK 148 G T+LL GP+ RE RHFGKAPG PHSHTKPYVRSKGRKFE+ARGRR SRG+K Sbjct: 132 GRGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASRGYK 186
>RL18_ICTPU (Q90YV0) 60S ribosomal protein L18| Length = 187 Score = 164 bits (414), Expect = 2e-40 Identities = 80/115 (69%), Positives = 93/115 (80%) Frame = -3 Query: 492 GKEEKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQLALRAPT 313 G+E K IAVVVGTITDD+RI IP +KV ALR T AR RI+ AGG+ +TFDQLA+ P Sbjct: 73 GRENK-IAVVVGTITDDVRILNIPKLKVCALRVTAGARRRILKAGGQVMTFDQLAVTTPK 131 Query: 312 GENTILLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFK 148 G+ T+LL GP+ ARE RHFGKAPG PHSHTKPY+RSKGRKFE+ARGRR SRG+K Sbjct: 132 GQGTVLLSGPRKAREVYRHFGKAPGTPHSHTKPYIRSKGRKFERARGRRASRGYK 186
>RL18B_XENLA (P02412) 60S ribosomal protein L18-B (L14B)| Length = 187 Score = 157 bits (398), Expect = 1e-38 Identities = 77/115 (66%), Positives = 92/115 (80%) Frame = -3 Query: 492 GKEEKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQLALRAPT 313 G+E K AVVVG ITDD+RI +IP +KV AL+ T R+RI+ +GG+ +TFDQLAL AP Sbjct: 73 GRENKT-AVVVGYITDDVRIHDIPKLKVCALKITSGDRSRILKSGGQIMTFDQLALAAPK 131 Query: 312 GENTILLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFK 148 G+NT+LL GP+ ARE RHFGKAPG PHS TKPYV SKGRKFE+ARGRR SRG+K Sbjct: 132 GQNTVLLSGPRKAREVYRHFGKAPGTPHSRTKPYVLSKGRKFERARGRRASRGYK 186
>RL18A_XENLA (P09897) 60S ribosomal protein L18-A (L14A)| Length = 187 Score = 154 bits (388), Expect = 2e-37 Identities = 74/114 (64%), Positives = 88/114 (77%) Frame = -3 Query: 489 KEEKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQLALRAPTG 310 + E AVVVG IT D+RI +IP + V AL+ T AR+RI+ AGG+ +TFDQLAL AP G Sbjct: 73 RRENKTAVVVGCITADVRIHDIPKLTVCALKLTSGARSRILKAGGQIMTFDQLALAAPKG 132 Query: 309 ENTILLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFK 148 +NT+LL GP+ ARE RHFGKAP PHS TKPYV SKGRKFE+ARGRR SRG+K Sbjct: 133 QNTVLLSGPRKAREVYRHFGKAPSTPHSRTKPYVLSKGRKFERARGRRASRGYK 186
>RL18B_SCHPO (Q8TFH1) 60S ribosomal protein L18-B| Length = 187 Score = 150 bits (379), Expect = 2e-36 Identities = 75/113 (66%), Positives = 87/113 (76%) Frame = -3 Query: 483 EKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQLALRAPTGEN 304 E V+VGT+TDD R+ +P + V ALRFT++ARARI+ AGGE LT DQLALRAPTG N Sbjct: 78 EGKTTVIVGTVTDDERLLTVPKLSVAALRFTKSARARILKAGGEVLTLDQLALRAPTGSN 137 Query: 303 TILLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFKV 145 T+LLRG K+AREA RHFG PH H PYVRS+GRKFE+ARGRR SR FKV Sbjct: 138 TVLLRGKKHAREAYRHFGFG---PHKHKAPYVRSEGRKFERARGRRKSRAFKV 187
>RL18A_SCHPO (Q10192) 60S ribosomal protein L18-A| Length = 187 Score = 148 bits (374), Expect = 7e-36 Identities = 73/113 (64%), Positives = 87/113 (76%) Frame = -3 Query: 483 EKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQLALRAPTGEN 304 + VVVGT+TDD R+ +P + + ALRFT++ARARI+ AGGE LT DQLALRAPTG N Sbjct: 78 QNKTTVVVGTVTDDERMLTVPKLSIAALRFTKSARARILKAGGEVLTLDQLALRAPTGSN 137 Query: 303 TILLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFKV 145 T+L+RG K+AREA RHFG PH H PYVRS+GRKFE+ARGRR SR FKV Sbjct: 138 TVLVRGKKHAREAYRHFGFG---PHKHKAPYVRSEGRKFERARGRRKSRAFKV 187
>RL18_YEAST (P07279) 60S ribosomal protein L18 (RP28)| Length = 186 Score = 143 bits (360), Expect = 3e-34 Identities = 71/108 (65%), Positives = 83/108 (76%) Frame = -3 Query: 468 VVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQLALRAPTGENTILLR 289 VVVGT+TDD RI E P V ALRFT ARA+IV AGGEC+T DQLA+RAP G+NT++LR Sbjct: 82 VVVGTVTDDARIFEFPKTTVAALRFTAGARAKIVKAGGECITLDQLAVRAPKGQNTLILR 141 Query: 288 GPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFKV 145 GP+N+REAVRHFG PH P + S GRKFE+ARGRR S+GFKV Sbjct: 142 GPRNSREAVRHFGMG---PHKGKAPRILSTGRKFERARGRRRSKGFKV 186
>RL18_TRYBB (P50885) 60S ribosomal protein L18| Length = 193 Score = 129 bits (325), Expect = 3e-30 Identities = 61/105 (58%), Positives = 86/105 (81%) Frame = -3 Query: 474 IAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQLALRAPTGENTIL 295 IAV+VG + DD+R+ IPA+++ ALRF+++AR RI AGGECLTFDQLA+ APTG+NT+L Sbjct: 86 IAVIVGDVLDDVRMTRIPALRICALRFSKSARERITGAGGECLTFDQLAMMAPTGKNTML 145 Query: 294 LRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNS 160 LRG K+ RE+V+HFG A GVP SH KP+V S+G++ +++ RR++ Sbjct: 146 LRGRKSGRESVKHFG-AAGVPGSHAKPHVSSRGKERQRSSKRRHA 189
>RL18_SALSA (P24558) 60S ribosomal protein L18| Length = 179 Score = 90.1 bits (222), Expect = 3e-18 Identities = 48/94 (51%), Positives = 62/94 (65%) Frame = -3 Query: 483 EKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQLALRAPTGEN 304 E AVVVGT+TDD+RI EIP +KV+AL+ T R RI+ + + F LAL AP + Sbjct: 75 ENRTAVVVGTVTDDVRIHEIPNLKVSALKITRRNRTRILKF-VQIMRFVGLALAAPNRQK 133 Query: 303 TILLRGPKNAREAVRHFGKAPGVPHSHTKPYVRS 202 ++LL P+NAR+ RHF AP +P HTKPYV S Sbjct: 134 SVLLSAPRNARDVSRHFANAPSIP--HTKPYVLS 165
>RL18_PIG (Q95342) 60S ribosomal protein L18 (Fragment)| Length = 103 Score = 43.1 bits (100), Expect = 4e-04 Identities = 22/32 (68%), Positives = 26/32 (81%) Frame = -3 Query: 492 GKEEKNIAVVVGTITDDMRIQEIPAMKVTALR 397 G+E K AVVVGTITDD+R QE+P +KV ALR Sbjct: 73 GREGKT-AVVVGTITDDVRFQEVPKLKVCALR 103
>RL18E_PYRKO (Q5JJF5) 50S ribosomal protein L18e| Length = 121 Score = 42.4 bits (98), Expect = 7e-04 Identities = 20/65 (30%), Positives = 39/65 (60%) Frame = -3 Query: 486 EEKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQLALRAPTGE 307 +E ++ +V G++ R++ + V A +F+E AR +I+ AGGE ++ ++L R P G Sbjct: 58 KEGDVVIVPGSVLGAGRLEH--KVVVAAWKFSEAARRKIIEAGGEAISIEELMERNPKGS 115 Query: 306 NTILL 292 I++ Sbjct: 116 GVIIM 120
>RL18E_PYRAB (Q9V197) 50S ribosomal protein L18e| Length = 120 Score = 42.0 bits (97), Expect = 9e-04 Identities = 22/65 (33%), Positives = 40/65 (61%) Frame = -3 Query: 486 EEKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQLALRAPTGE 307 ++ ++ VV G++ +I++ + V A +F+ETAR +I AGGE +T ++L R P G Sbjct: 57 KDGDMIVVPGSVLGAGKIEK--KVIVAAWKFSETARRKIEEAGGEAITIEELIKRNPKGS 114 Query: 306 NTILL 292 I++ Sbjct: 115 GVIIM 119
>RL18E_PYRHO (O59302) 50S ribosomal protein L18e| Length = 120 Score = 41.6 bits (96), Expect = 0.001 Identities = 21/65 (32%), Positives = 40/65 (61%) Frame = -3 Query: 486 EEKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQLALRAPTGE 307 ++ ++ VV G++ ++++ + V A +F+ETAR +I AGGE +T ++L R P G Sbjct: 57 KDGDMIVVPGSVLGAGKLEK--KVIVAAWKFSETARKKITEAGGEAITIEELIERNPKGS 114 Query: 306 NTILL 292 I++ Sbjct: 115 GVIIM 119
>RL18E_PYRFU (Q8U0E5) 50S ribosomal protein L18e| Length = 120 Score = 41.6 bits (96), Expect = 0.001 Identities = 18/40 (45%), Positives = 27/40 (67%) Frame = -3 Query: 411 VTALRFTETARARIVNAGGECLTFDQLALRAPTGENTILL 292 V A +F+ETAR +I+ AGGE +T ++L R PTG ++ Sbjct: 80 VAAWKFSETARRKIIEAGGEAITIEELIERNPTGSGVRIM 119
>RL18E_METKA (Q8TVB7) 50S ribosomal protein L18e| Length = 127 Score = 40.4 bits (93), Expect = 0.003 Identities = 23/59 (38%), Positives = 33/59 (55%) Frame = -3 Query: 486 EEKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQLALRAPTG 310 +E+ +V G + D I + ++V A RF+ TAR +I AGGECLT +L P G Sbjct: 64 QEEETVLVPGKVLGDGVITQ--PLRVAAWRFSRTARMKIEAAGGECLTIRELLEENPEG 120
>RL18E_METJA (P54022) 50S ribosomal protein L18e| Length = 121 Score = 38.1 bits (87), Expect = 0.013 Identities = 20/65 (30%), Positives = 36/65 (55%) Frame = -3 Query: 486 EEKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQLALRAPTGE 307 +E ++ +V G + +++ + V A F+ETA+ I AGGE +T ++L R P G Sbjct: 58 KEGDVVLVPGKVLGAGKLEH--KVVVAAFAFSETAKKLIKEAGGEAITIEELIKRNPKGS 115 Query: 306 NTILL 292 N ++ Sbjct: 116 NVKIM 120
>RL18E_METTH (O26145) 50S ribosomal protein L18e| Length = 121 Score = 37.7 bits (86), Expect = 0.017 Identities = 22/54 (40%), Positives = 31/54 (57%) Frame = -3 Query: 465 VVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQLALRAPTGEN 304 V+G+ D R+Q V AL F++TAR +I AGGECLT ++ P +N Sbjct: 69 VLGSGNLDHRVQ------VVALSFSQTARDKIERAGGECLTLGKIVEENPAIKN 116
>RL18E_METMP (Q6LXM7) 50S ribosomal protein L18e| Length = 120 Score = 35.4 bits (80), Expect = 0.084 Identities = 15/40 (37%), Positives = 23/40 (57%) Frame = -3 Query: 411 VTALRFTETARARIVNAGGECLTFDQLALRAPTGENTILL 292 V A F+ETA++ I GG+CLT ++L P G ++ Sbjct: 80 VAAFSFSETAKSAIEAVGGKCLTIEELIAENPKGSKVTIM 119
>RL18E_ARCFU (O29138) 50S ribosomal protein L18e| Length = 117 Score = 34.3 bits (77), Expect = 0.19 Identities = 16/42 (38%), Positives = 24/42 (57%) Frame = -3 Query: 417 MKVTALRFTETARARIVNAGGECLTFDQLALRAPTGENTILL 292 +KV AL F+E A ++I AGG C+ ++L P G L+ Sbjct: 75 VKVAALSFSEKAASKIREAGGVCMKIEELLKENPKGSGVRLM 116
>RL18E_METMA (Q8PW46) 50S ribosomal protein L18e| Length = 126 Score = 32.0 bits (71), Expect = 0.92 Identities = 14/41 (34%), Positives = 24/41 (58%) Frame = -3 Query: 411 VTALRFTETARARIVNAGGECLTFDQLALRAPTGENTILLR 289 V A+ F+E+A +I AGG+CL+ +++ P G + R Sbjct: 86 VAAVTFSESAVEKITEAGGKCLSVEEIMEANPKGSGIRIFR 126
>RL18E_METAC (Q8TT44) 50S ribosomal protein L18e| Length = 126 Score = 32.0 bits (71), Expect = 0.92 Identities = 13/41 (31%), Positives = 24/41 (58%) Frame = -3 Query: 411 VTALRFTETARARIVNAGGECLTFDQLALRAPTGENTILLR 289 + AL F+++A +I AGG+CL+ +++ P G + R Sbjct: 86 IAALTFSDSAFEKITEAGGKCLSLEEIMEANPKGSGIRIFR 126
>MURD_RHILO (Q98KB1) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC| 6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase) (D-glutamic acid-adding enzyme) Length = 466 Score = 31.6 bits (70), Expect = 1.2 Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 4/63 (6%) Frame = -3 Query: 387 TARARIVNAGGECLTFDQ----LALRAPTGENTILLRGPKNAREAVRHFGKAPGVPHSHT 220 TARA ++ G + L +D +A A TG T LRG A+ + F +PGVP +H Sbjct: 24 TARA-LIEGGAQVLAWDDNPDSVAKAAATGIATADLRGADWAKFSA--FVLSPGVPLTHP 80 Query: 219 KPY 211 KP+ Sbjct: 81 KPH 83
>IF2_BIFLO (Q8G3Y5) Translation initiation factor IF-2| Length = 954 Score = 31.6 bits (70), Expect = 1.2 Identities = 26/82 (31%), Positives = 35/82 (42%) Frame = +3 Query: 126 NQKGQLKP*SHGCSSYHEPSQTSYPWSAHRAWCGCAAHQEPCRSASPPHGHSWVPSTGSC 305 N KG KP P+ S P S + AA P R ASP H P+ G+ Sbjct: 54 NAKGDSKP-----VQQRRPAAPSAPASTSSSAPTPAA---PARQASPASAHQQAPTPGAP 105 Query: 306 SPQLEHGEQAGQK*GTPHQH*Q 371 +P+ + G + G TP +H Q Sbjct: 106 TPRPQGGARPGMP--TPGRHGQ 125
>HOXV_AZOVI (P40597) Hydrogenase expression/formation protein hoxV| Length = 348 Score = 30.8 bits (68), Expect = 2.1 Identities = 21/73 (28%), Positives = 36/73 (49%) Frame = +2 Query: 146 TLKPRLFLLPRAFSNFLPLERT*GLVWLCGTPGALPKCLTASRAFLGPLNRIVFSPVGAR 325 +++ L L + + +PLER L+ LC A + LTA RA P + + + A Sbjct: 95 SIRESLLRLVQVWELPVPLERLKALLALCRRAAARLQALTAFRAAPLPADAELEGTLAAL 154 Query: 326 RASWSKVRHSPPA 364 A+W+ ++ PA Sbjct: 155 AAAWADLQPPAPA 167
>HUPK_AZOVI (P31878) Hydrogenase expression/formation protein hupK| Length = 342 Score = 30.8 bits (68), Expect = 2.1 Identities = 21/73 (28%), Positives = 36/73 (49%) Frame = +2 Query: 146 TLKPRLFLLPRAFSNFLPLERT*GLVWLCGTPGALPKCLTASRAFLGPLNRIVFSPVGAR 325 +++ L L + + +PLER L+ LC A + LTA RA P + + + A Sbjct: 89 SIRESLLRLVQVWELPVPLERLKALLALCRRAAARLQALTAFRAAPLPADAELEGTLAAL 148 Query: 326 RASWSKVRHSPPA 364 A+W+ ++ PA Sbjct: 149 AAAWADLQPPAPA 161
>NPDC1_MOUSE (Q64322) Neural proliferation differentiation and control protein 1| precursor (NPDC-1 protein) Length = 332 Score = 30.0 bits (66), Expect = 3.5 Identities = 24/86 (27%), Positives = 32/86 (37%) Frame = +2 Query: 215 GLVWLCGTPGALPKCLTASRAFLGPLNRIVFSPVGARRASWSKVRHSPPALTILALAVSV 394 GL GT +P +SRA GP+ P G RH +L LA + Sbjct: 149 GLPSTHGTSSPIPHTSLSSRASSGPVQMSPLEPQG---------RHGNGLTLVLILAFCL 199 Query: 395 NLRAVTFIAGISWIRMSSVIVPTTTA 472 A +A + W R+ I T A Sbjct: 200 ASSAALAVAALCWCRLQREIRLTQKA 225
>RL18E_PYRAE (Q8ZYQ2) 50S ribosomal protein L18e| Length = 122 Score = 30.0 bits (66), Expect = 3.5 Identities = 16/59 (27%), Positives = 32/59 (54%) Frame = -3 Query: 486 EEKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQLALRAPTG 310 +E ++ VV G + ++ + + V A++ + A +++ AGGE LT +L + P G Sbjct: 59 KEGDVVVVPGKLLAGGQLNK--KIIVAAVKISPKAARKVIEAGGEVLTIPELVRKYPRG 115
>PHYK2_SOYBN (Q2N2K2) Probable phytol kinase 2, chloroplast precursor (EC| 2.7.-.-) Length = 292 Score = 29.6 bits (65), Expect = 4.6 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = +3 Query: 204 SAHRAWCGCAAHQEPCRSASPPHGHSWVPSTGS 302 +A AW G A+ S SPPH + PS GS Sbjct: 2 AAAAAWTGAASPNSLLLSRSPPHAAALAPSPGS 34
>PACC_GIBFU (Q8J1U9) pH-response transcription factor pacC/RIM101| Length = 618 Score = 29.6 bits (65), Expect = 4.6 Identities = 16/37 (43%), Positives = 18/37 (48%) Frame = +3 Query: 225 GCAAHQEPCRSASPPHGHSWVPSTGSCSPQLEHGEQA 335 G A P S S GHS PS+ + SPQ HG A Sbjct: 416 GTPAVTPPSSSMSYTSGHSPSPSSSAMSPQSRHGSTA 452
>TIM50_YARLI (Q6CDV7) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 466 Score = 29.6 bits (65), Expect = 4.6 Identities = 13/25 (52%), Positives = 14/25 (56%) Frame = -3 Query: 288 GPKNAREAVRHFGKAPGVPHSHTKP 214 GPKN EAV G P VP T+P Sbjct: 440 GPKNLSEAVSSIGSLPPVPQQPTEP 464
>PHYK_MAIZE (Q2N2K4) Probable phytol kinase, chloroplast precursor (EC 2.7.-.-)| Length = 303 Score = 29.6 bits (65), Expect = 4.6 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = +3 Query: 204 SAHRAWCGCAAHQEPCRSASPPHGHSWVPSTGS 302 +A AW G A+ S SPPH + PS GS Sbjct: 2 AAAAAWTGAASPNSLLLSRSPPHAAALAPSPGS 34
>GYRB_MYXXA (O33367) DNA gyrase subunit B (EC 5.99.1.3)| Length = 815 Score = 29.6 bits (65), Expect = 4.6 Identities = 21/70 (30%), Positives = 26/70 (37%), Gaps = 3/70 (4%) Frame = +3 Query: 141 LKP*SHGCSSYHEPSQTSY---PWSAHRAWCGCAAHQEPCRSASPPHGHSWVPSTGSCSP 311 + P S C + TS+ P + R+WC EPC ST SC Sbjct: 644 MTPSSAACRTCWAACATSWCRTPSTTPRSWCSTPTRMEPCGRRCSTTPSCRRRSTWSCRL 703 Query: 312 QLEHGEQAGQ 341 EH AGQ Sbjct: 704 CAEHLRGAGQ 713
>PACC_GIBMO (Q873X0) pH-response transcription factor pacC/RIM101| Length = 613 Score = 29.6 bits (65), Expect = 4.6 Identities = 16/37 (43%), Positives = 18/37 (48%) Frame = +3 Query: 225 GCAAHQEPCRSASPPHGHSWVPSTGSCSPQLEHGEQA 335 G A P S S GHS PS+ + SPQ HG A Sbjct: 411 GTPAVTPPSSSMSYTSGHSPSPSSSAMSPQSRHGSTA 447
>NRX3A_RAT (Q07310) Neurexin-3-alpha precursor (Neurexin III-alpha)| Length = 1578 Score = 29.3 bits (64), Expect = 6.0 Identities = 16/47 (34%), Positives = 28/47 (59%) Frame = +1 Query: 319 STESKLVKSEALPTSIDNPCPRCLCEPQSGNLHCWDLLDPHVICDCA 459 ++E +L+ S+++ + PC CE +G + C+ LLD H CDC+ Sbjct: 183 NSEPRLLGSQSVQLEAEGPCGERPCE--NGGI-CF-LLDGHPTCDCS 225
>PACC_CEPAC (Q96X49) pH-response transcription factor pacC/RIM101| Length = 621 Score = 29.3 bits (64), Expect = 6.0 Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 2/62 (3%) Frame = +3 Query: 159 GCSSYHEPSQTSYPWSAHRAWC--GCAAHQEPCRSASPPHGHSWVPSTGSCSPQLEHGEQ 332 G YH+P + S A G A P + S GHS PS + SPQ H Sbjct: 380 GPDGYHQPVSAATMASPLTAMSSTGTPAVTPPSSAVSYTSGHSPSPSAPAMSPQSRHSST 439 Query: 333 AG 338 +G Sbjct: 440 SG 441
>NU214_DROME (Q9W1X4) Nuclear pore complex protein Nup214 (Nucleoporin Nup214)| (214 kDa nucleoporin) (DNup214) Length = 1711 Score = 29.3 bits (64), Expect = 6.0 Identities = 24/87 (27%), Positives = 37/87 (42%) Frame = +2 Query: 233 GTPGALPKCLTASRAFLGPLNRIVFSPVGARRASWSKVRHSPPALTILALAVSVNLRAVT 412 GT A+PK +S A +P G A+ +K +S P T+ + ++ + Sbjct: 1108 GTAAAVPKSEPSSTATTSVATSASTAPFGIFSAALAKPSNSEPITTVTSNTTTITSKPTN 1167 Query: 413 FIAGISWIRMSSVIVPTTTAMFFSSFP 493 IA S S V TT A+ S+ P Sbjct: 1168 VIASSSVTDAPS--VTTTNAVTSSTDP 1192
>POLR_OYMV (P20127) RNA replicase polyprotein (EC 2.7.7.48)| Length = 1776 Score = 28.9 bits (63), Expect = 7.8 Identities = 12/29 (41%), Positives = 14/29 (48%) Frame = -2 Query: 442 HADPRDPSNEGYRSEVHRDSEGKDCQCWW 356 H+ SN SE R S+ DC CWW Sbjct: 1000 HSSHPSSSNSRLESETTRLSKYIDCYCWW 1028 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,583,581 Number of Sequences: 219361 Number of extensions: 1563056 Number of successful extensions: 5009 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 4766 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5001 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3465624120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
