ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbaal5b17 |
|---|---|
| Clone Library Name | barley_pub |
>CPN_DROME (Q02910) Calphotin| Length = 864 Score = 35.8 bits (81), Expect = 0.12 Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 1/65 (1%) Frame = -3 Query: 515 SPFQRHWVPPQPPGVAMPEAAAA-IRQPRSLPRQEPQPAADSADAPRLADSAMNEQMDGV 339 SP +PP VA PE A A I P +P EP A + P A + E +D V Sbjct: 569 SPIPETSLPPPNEAVASPEVAVAPITAPEPIPEPEPSLATPTEPIPVEAPVVIQEAVDAV 628 Query: 338 SSAVT 324 VT Sbjct: 629 EVPVT 633
>MLL3_MOUSE (Q8BRH4) Myeloid/lymphoid or mixed-lineage leukemia protein 3| homolog (Histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3) (EC 2.1.1.43) Length = 4903 Score = 33.9 bits (76), Expect = 0.45 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Frame = -3 Query: 491 PPQPPGVAMPEAAAAIRQPRSLPRQE-PQPAADSADAPRLADSAMNEQMDGVSSAVTSD 318 PP+ PG P AAA ++PR PR++ P + PR + E D + T++ Sbjct: 18 PPEEPGAPAPSPAAADKRPRGRPRKDGASPFQRARKKPRSRGKSTVEDEDSMDGLETTE 76
>MLL3_HUMAN (Q8NEZ4) Myeloid/lymphoid or mixed-lineage leukemia protein 3| homolog (Histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3) (EC 2.1.1.43) (Homologous to ALR protein) Length = 4911 Score = 33.5 bits (75), Expect = 0.59 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%) Frame = -3 Query: 491 PPQPPGVAMPEAAAAIRQPRSLPRQE-PQPAADSADAPRLADSAMNEQMDGVSSAVTSD 318 PP+ PG P AAA ++PR PR++ P + PR E D + T++ Sbjct: 18 PPEEPGAPAPSPAAADKRPRGRPRKDGASPFQRARKKPRSRGKTAVEDEDSMDGLETTE 76
>ACH1_MANSE (P91766) Acetylcholine receptor protein, alpha-like subunit| precursor (MARA1) Length = 516 Score = 33.1 bits (74), Expect = 0.77 Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 4/84 (4%) Frame = +2 Query: 224 LVKIRRLQALLHSHRWPHQPWYPWQRCY*ATRHW*QRMIHRPSAHSWQSLPVXXXXXXXX 403 L+ + ++ ++ W Q WY ++ + + M+H PS H W+ V Sbjct: 61 LIDVNLKNQIMTTNLWVEQSWYDYKLSWEPREYGGVEMLHVPSDHIWRPDIVLYNNADGN 120 Query: 404 XXXXXXXXGTL----AAEWQPPPL 463 TL EW+PP + Sbjct: 121 FEVTLATKATLNYTGRVEWRPPAI 144
>HCN4_MOUSE (O70507) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 4 (Brain cyclic nucleotide gated channel 3) (BCNG-3) Length = 1186 Score = 32.7 bits (73), Expect = 1.0 Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 3/55 (5%) Frame = -3 Query: 482 PPGVAM-PEAAAAIRQPRSLP--RQEPQPAADSADAPRLADSAMNEQMDGVSSAV 327 PPG+A PE A QP + P +Q PQPA+ S + P AD+A+ +++G ++A+ Sbjct: 146 PPGLATEPERPATAAQPAASPPPQQPPQPASASCEQPS-ADTAI--KVEGGAAAI 197
>WASF3_HUMAN (Q9UPY6) Wiskott-Aldrich syndrome protein family member 3| (WASP-family protein member 3) (WAVE-3 protein) (Verprolin homology domain-containing protein 3) Length = 502 Score = 32.0 bits (71), Expect = 1.7 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = -3 Query: 491 PPQPPGVAMPEAAAAIRQPRSLPRQEPQPAADSA 390 PP PP +P A A P +P Q P PA+ S+ Sbjct: 344 PPPPPPPVIPSAQTAFVSPLQMPMQPPFPASASS 377
>HCN4_RAT (Q9JKA7) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 4 Length = 1198 Score = 32.0 bits (71), Expect = 1.7 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 3/53 (5%) Frame = -3 Query: 482 PPGVAM-PEAAAAIRQPRSLP--RQEPQPAADSADAPRLADSAMNEQMDGVSS 333 PPG+A PE A QP + P +Q PQPA+ S + P AD+A+ + +S Sbjct: 146 PPGLATEPERPGAAAQPAASPPPQQPPQPASASCEQPS-ADTAIKVEGGAAAS 197
>ZIM10_HUMAN (Q9ULJ6) Retinoic acid-induced protein 17 (PIAS-like protein Zimp10)| Length = 1067 Score = 32.0 bits (71), Expect = 1.7 Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 3/40 (7%) Frame = -3 Query: 491 PPQ---PPGVAMPEAAAAIRQPRSLPRQEPQPAADSADAP 381 PPQ PP MP AA+ +P S P QE P A S+D P Sbjct: 918 PPQLSHPPD--MPNNMAALEKPLSHPMQETMPHAGSSDQP 955
>ZIM10_MOUSE (Q6P1E1) Retinoic acid-induced protein 17 (PIAS-like protein Zimp10)| Length = 1072 Score = 32.0 bits (71), Expect = 1.7 Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 3/40 (7%) Frame = -3 Query: 491 PPQ---PPGVAMPEAAAAIRQPRSLPRQEPQPAADSADAP 381 PPQ PP MP AA+ +P S P QE P A S+D P Sbjct: 925 PPQLSHPPD--MPNNMAALEKPLSHPMQETMPHAGSSDQP 962
>SCEL_MOUSE (Q9EQG3) Sciellin| Length = 652 Score = 31.6 bits (70), Expect = 2.2 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%) Frame = -3 Query: 506 QRHWVPPQPPGV-AMPEAAAAIRQPRSLPRQEPQPAADSA 390 ++ W PP PPG A P AA+ R P P P+P + A Sbjct: 135 RQSWFPPPPPGHNASPSTAASRRDPALHPPLPPKPCSPIA 174
>SF3A1_ARATH (Q8RXF1) Probable splicing factor 3 subunit 1| Length = 785 Score = 31.2 bits (69), Expect = 2.9 Identities = 19/67 (28%), Positives = 28/67 (41%) Frame = -3 Query: 515 SPFQRHWVPPQPPGVAMPEAAAAIRQPRSLPRQEPQPAADSADAPRLADSAMNEQMDGVS 336 S F H P+P G +P +A + QP +P P P + A P + Q S Sbjct: 629 SQFAHHMQIPRPYGQ-LPPSAMGMMQPPPMPGMAPPPPPEEAPPPLPEEPEAKRQKFDES 687 Query: 335 SAVTSDE 315 + V D+ Sbjct: 688 ALVPEDQ 694
>VP61_NPVAC (Q03209) 61 kDa protein| Length = 543 Score = 31.2 bits (69), Expect = 2.9 Identities = 20/55 (36%), Positives = 25/55 (45%) Frame = -3 Query: 515 SPFQRHWVPPQPPGVAMPEAAAAIRQPRSLPRQEPQPAADSADAPRLADSAMNEQ 351 SP PP PP +M E A P EPQPAA D +L ++ NE+ Sbjct: 189 SPVPNIPAPPPPPPPSMSELPPAPPMPT-----EPQPAAPLDDRQQLLEAIRNEK 238
>ITA2_BOVIN (P53710) Integrin alpha-2 precursor (Platelet membrane glycoprotein| Ia) (GPIa) (Collagen receptor) (VLA-2 alpha chain) (CD49b antigen) (Fragment) Length = 1170 Score = 31.2 bits (69), Expect = 2.9 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = +3 Query: 372 CQSRSVG*VCCWLWLLSWKGPWLPNGSRRLWHG 470 C++ S + CWL L KG + N S R+W+G Sbjct: 1039 CRTASCSNIMCWLRDLQVKGEYFLNVSTRIWNG 1071
>SYN2_HUMAN (Q92777) Synapsin-2 (Synapsin II)| Length = 582 Score = 31.2 bits (69), Expect = 2.9 Identities = 18/55 (32%), Positives = 24/55 (43%) Frame = -3 Query: 491 PPQPPGVAMPEAAAAIRQPRSLPRQEPQPAADSADAPRLADSAMNEQMDGVSSAV 327 PP PPG A+AA P ++P PA+ A P S + +S AV Sbjct: 36 PPPPPGPGAASASAAPPTASPGPERKPPPASAPAPQPAPTPSVGSSFFSSLSQAV 90
>PHLA1_HUMAN (Q8WV24) Pleckstrin homology-like domain family A member 1 (T-cell| death-associated gene 51 protein) (Apoptosis-associated nuclear protein) (Proline- and histidine-rich protein) (Proline- and glutamine-rich protein) (PQ-rich protein) Length = 259 Score = 30.8 bits (68), Expect = 3.8 Identities = 16/53 (30%), Positives = 24/53 (45%) Frame = -3 Query: 506 QRHWVPPQPPGVAMPEAAAAIRQPRSLPRQEPQPAADSADAPRLADSAMNEQM 348 Q+H V QPP P+ QP+ P+ +PQP S P+ +Q+ Sbjct: 157 QQHLVQQQPPSQPQPQPQL---QPQPQPQPQPQPQPQSQPQPQPQPKPQPQQL 206
>WASF3_MOUSE (Q8VHI6) Wiskott-Aldrich syndrome protein family member 3| (WASP-family protein member 3) (WAVE-3 protein) Length = 501 Score = 30.8 bits (68), Expect = 3.8 Identities = 14/37 (37%), Positives = 18/37 (48%) Frame = -3 Query: 491 PPQPPGVAMPEAAAAIRQPRSLPRQEPQPAADSADAP 381 PP PP +P A A P +P Q P PA+ + P Sbjct: 344 PPPPPPPMIPSAQTAFVSPLQMPTQPPFPASAVSTYP 380
>CCD96_MOUSE (Q9CR92) Coiled-coil domain-containing protein 96| Length = 584 Score = 30.8 bits (68), Expect = 3.8 Identities = 17/52 (32%), Positives = 25/52 (48%) Frame = -3 Query: 500 HWVPPQPPGVAMPEAAAAIRQPRSLPRQEPQPAADSADAPRLADSAMNEQMD 345 H P+ PG A A R+P SLP+ +P+ +S + P D +E D Sbjct: 79 HVEVPESPGAAETAGEAVSREPESLPQTQPKTKPESKE-PEDKDEDEDEDED 129
>Y066_NPVOP (Q83949) Hypothetical 98.6 kDa protein (ORF71)| Length = 875 Score = 30.4 bits (67), Expect = 5.0 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%) Frame = -3 Query: 512 PFQRHWV--PPQPPGVAMPEAAAAIRQPRSLPRQEPQPAADSADAPR 378 P+ ++W PPQPP + + P+ P+Q+PQP P+ Sbjct: 94 PYGQYWPQQPPQPPPDQPQQPQPPQQPPQQPPQQQPQPPQPPQQPPQ 140
>PATL5_ARATH (Q9M0R2) Patellin-5| Length = 668 Score = 30.4 bits (67), Expect = 5.0 Identities = 15/51 (29%), Positives = 26/51 (50%) Frame = -3 Query: 497 WVPPQPPGVAMPEAAAAIRQPRSLPRQEPQPAADSADAPRLADSAMNEQMD 345 W P+ P A+ EAAA++ +P+ P + P S +A ++ E M+ Sbjct: 221 WTEPELPDEAVLEAAASVPEPKQ-PEPQTPPPPPSTTTSTVASRSLAEMMN 270
>ZN219_HUMAN (Q9P2Y4) Zinc finger protein 219| Length = 722 Score = 30.4 bits (67), Expect = 5.0 Identities = 16/46 (34%), Positives = 23/46 (50%) Frame = -3 Query: 491 PPQPPGVAMPEAAAAIRQPRSLPRQEPQPAADSADAPRLADSAMNE 354 PPQP P+ +PRS+P+ EP+P + P A +A E Sbjct: 227 PPQPQPQPPPQP-----EPRSVPQPEPEPEPEREATPTPAPAAPEE 267
>EP400_HUMAN (Q96L91) E1A-binding protein p400 (EC 3.6.1.-) (p400 kDa| SWI2/SNF2-related protein) (Domino homolog) (hDomino) (CAG repeat protein 32) (Trinucleotide repeat-containing gene 12 protein) Length = 3160 Score = 30.4 bits (67), Expect = 5.0 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 4/47 (8%) Frame = -3 Query: 506 QRHWVPPQPPGV----AMPEAAAAIRQPRSLPRQEPQPAADSADAPR 378 Q+ +PPQPP A P+ AA ++ S P Q+ P + APR Sbjct: 2824 QKLQMPPQPPPPQAQSAPPQPAAQVQVQTSQPPQQQSPQLTTVTAPR 2870
>MYST3_RAT (Q5TKR9) Histone acetyltransferase MYST3 (EC 2.3.1.48) (EC 2.3.1.-)| (MYST protein 3) (MOZ, YBF2/SAS3, SAS2 and TIP60 protein 3) (Monocytic leukemia zinc finger protein) (Monocytic leukemia zinc finger homolog) Length = 1998 Score = 30.0 bits (66), Expect = 6.5 Identities = 16/52 (30%), Positives = 22/52 (42%) Frame = -3 Query: 512 PFQRHWVPPQPPGVAMPEAAAAIRQPRSLPRQEPQPAADSADAPRLADSAMN 357 P Q+ PQ P +QP P+Q+PQP P L+ +MN Sbjct: 1651 PPQQPQPQPQQQAAPQPPPPQPQQQPPPPPQQQPQPPPPPQQQPPLSQCSMN 1702
>ITA2_HUMAN (P17301) Integrin alpha-2 precursor (Platelet membrane glycoprotein| Ia) (GPIa) (Collagen receptor) (VLA-2 alpha chain) (CD49b antigen) Length = 1181 Score = 30.0 bits (66), Expect = 6.5 Identities = 12/33 (36%), Positives = 19/33 (57%) Frame = +3 Query: 372 CQSRSVG*VCCWLWLLSWKGPWLPNGSRRLWHG 470 C++ S V CWL + KG + N + R+W+G Sbjct: 1050 CRTASCSNVTCWLKDVHMKGEYFVNVTTRIWNG 1082
>PDC6I_XENLA (Q9W6C5) Programmed cell death 6-interacting protein (Signal| transduction protein Xp95) Length = 867 Score = 29.6 bits (65), Expect = 8.5 Identities = 14/37 (37%), Positives = 17/37 (45%) Frame = -3 Query: 491 PPQPPGVAMPEAAAAIRQPRSLPRQEPQPAADSADAP 381 PP+PP AMP A+ P AADS+ P Sbjct: 758 PPRPPPPAMPSASPVPASAAQASNPAPTAAADSSQPP 794
>NOLC1_RAT (P41777) Nucleolar phosphoprotein p130 (Nucleolar 130 kDa protein)| (140 kDa nucleolar phosphoprotein) (Nopp140) (Nucleolar and coiled-body phosphoprotein 1) Length = 704 Score = 29.6 bits (65), Expect = 8.5 Identities = 16/54 (29%), Positives = 27/54 (50%) Frame = -3 Query: 482 PPGVAMPEAAAAIRQPRSLPRQEPQPAADSADAPRLADSAMNEQMDGVSSAVTS 321 PP V++ + + + P+ Q QPA SAD+ +DS+ E+ + V S Sbjct: 304 PPSVSLSKKSVGAQSPKKAAAQT-QPADSSADSSEESDSSSEEEKKTPAKTVVS 356
>HCN4_HUMAN (Q9Y3Q4) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 4 Length = 1203 Score = 29.6 bits (65), Expect = 8.5 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 4/38 (10%) Frame = -3 Query: 482 PPGVAM-PEAAAAIRQPRSLP---RQEPQPAADSADAP 381 PPG+A PE A QP + P +Q PQPA+ S + P Sbjct: 145 PPGLAAEPERPGASAQPAASPPPPQQPPQPASASCEQP 182 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 91,186,238 Number of Sequences: 219361 Number of extensions: 1869434 Number of successful extensions: 6747 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 6016 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6695 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6427774254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
