ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal5b13 |
|---|---|
| Clone Library Name | barley_pub |
>SUS1_HORVU (P31922) Sucrose synthase 1 (EC 2.4.1.13) (Sucrose-UDP| glucosyltransferase 1) Length = 807 Score = 50.8 bits (120), Expect = 8e-07 Identities = 25/25 (100%), Positives = 25/25 (100%) Frame = -1 Query: 353 LEMFYALKYRSLAAAVPLAVDGESS 279 LEMFYALKYRSLAAAVPLAVDGESS Sbjct: 781 LEMFYALKYRSLAAAVPLAVDGESS 805
>SUS1_ORYSA (P30298) Sucrose synthase 1 (EC 2.4.1.13) (Sucrose-UDP| glucosyltransferase 1) Length = 808 Score = 47.8 bits (112), Expect = 7e-06 Identities = 22/25 (88%), Positives = 25/25 (100%) Frame = -1 Query: 353 LEMFYALKYRSLAAAVPLAVDGESS 279 +EMFYALKYRSLA+AVPLAVDGES+ Sbjct: 782 IEMFYALKYRSLASAVPLAVDGEST 806
>SUS2_TULGE (Q41607) Sucrose synthase 2 (EC 2.4.1.13) (Sucrose-UDP| glucosyltransferase 2) Length = 820 Score = 44.3 bits (103), Expect = 7e-05 Identities = 20/25 (80%), Positives = 24/25 (96%) Frame = -1 Query: 353 LEMFYALKYRSLAAAVPLAVDGESS 279 LEMFYALKYR+LA +VPLAVDGE++ Sbjct: 786 LEMFYALKYRNLAKSVPLAVDGEAA 810
>SUS2_HORVU (P31923) Sucrose synthase 2 (EC 2.4.1.13) (Sucrose-UDP| glucosyltransferase 2) Length = 816 Score = 42.0 bits (97), Expect = 4e-04 Identities = 19/25 (76%), Positives = 22/25 (88%) Frame = -1 Query: 353 LEMFYALKYRSLAAAVPLAVDGESS 279 LEM YALKYR +AA VPLAV+GE+S Sbjct: 790 LEMLYALKYRKMAATVPLAVEGETS 814
>SUS2_ORYSA (P31924) Sucrose synthase 2 (EC 2.4.1.13) (Sucrose-UDP| glucosyltransferase 2) Length = 816 Score = 40.4 bits (93), Expect = 0.001 Identities = 18/25 (72%), Positives = 22/25 (88%) Frame = -1 Query: 353 LEMFYALKYRSLAAAVPLAVDGESS 279 LEM YALKYR++A+ VPLAV+GE S Sbjct: 790 LEMLYALKYRTMASTVPLAVEGEPS 814
>SUS2_MAIZE (P49036) Sucrose synthase 2 (EC 2.4.1.13) (Sucrose-UDP| glucosyltransferase 2) Length = 816 Score = 40.4 bits (93), Expect = 0.001 Identities = 18/25 (72%), Positives = 22/25 (88%) Frame = -1 Query: 353 LEMFYALKYRSLAAAVPLAVDGESS 279 LEM YALKYR++A+ VPLAV+GE S Sbjct: 790 LEMLYALKYRTMASTVPLAVEGEPS 814
>SUS3_ORYSA (Q43009) Sucrose synthase 3 (EC 2.4.1.13) (Sucrose-UDP| glucosyltransferase 3) Length = 816 Score = 40.0 bits (92), Expect = 0.001 Identities = 17/25 (68%), Positives = 21/25 (84%) Frame = -1 Query: 353 LEMFYALKYRSLAAAVPLAVDGESS 279 LEM YALKYR +A VPLA++GE+S Sbjct: 790 LEMLYALKYRKMATTVPLAIEGEAS 814
>SUS1_TULGE (Q41608) Sucrose synthase 1 (EC 2.4.1.13) (Sucrose-UDP| glucosyltransferase 1) Length = 805 Score = 38.9 bits (89), Expect = 0.003 Identities = 17/21 (80%), Positives = 20/21 (95%) Frame = -1 Query: 353 LEMFYALKYRSLAAAVPLAVD 291 LEMFYALKYR+LA +VPLA+D Sbjct: 784 LEMFYALKYRNLAKSVPLAID 804
>SUSY_PHAAU (Q01390) Sucrose synthase (EC 2.4.1.13) (Sucrose-UDP| glucosyltransferase) Length = 805 Score = 37.4 bits (85), Expect = 0.009 Identities = 17/21 (80%), Positives = 19/21 (90%) Frame = -1 Query: 353 LEMFYALKYRSLAAAVPLAVD 291 LEMFYALKYR LA +VPLAV+ Sbjct: 785 LEMFYALKYRKLAESVPLAVE 805
>SUSY_MEDSA (O65026) Sucrose synthase (EC 2.4.1.13) (Sucrose-UDP| glucosyltransferase) Length = 805 Score = 37.4 bits (85), Expect = 0.009 Identities = 17/21 (80%), Positives = 19/21 (90%) Frame = -1 Query: 353 LEMFYALKYRSLAAAVPLAVD 291 LEMFYALKYR LA +VPLAV+ Sbjct: 785 LEMFYALKYRKLAESVPLAVE 805
>SUSY_VICFA (P31926) Sucrose synthase (EC 2.4.1.13) (Sucrose-UDP| glucosyltransferase) Length = 806 Score = 37.4 bits (85), Expect = 0.009 Identities = 17/21 (80%), Positives = 19/21 (90%) Frame = -1 Query: 353 LEMFYALKYRSLAAAVPLAVD 291 LEMFYALKYR LA +VPLAV+ Sbjct: 785 LEMFYALKYRKLAESVPLAVE 805
>SUSY_ALNGL (P49034) Sucrose synthase (EC 2.4.1.13) (Sucrose-UDP| glucosyltransferase) Length = 803 Score = 36.6 bits (83), Expect = 0.016 Identities = 16/21 (76%), Positives = 19/21 (90%) Frame = -1 Query: 353 LEMFYALKYRSLAAAVPLAVD 291 +EMFYALKYR LA +VPLAV+ Sbjct: 783 IEMFYALKYRKLAESVPLAVE 803
>SUS1_DAUCA (P49035) Sucrose synthase isoform I (EC 2.4.1.13) (Sucrose-UDP| glucosyltransferase 1) (Susy*Dc1) Length = 808 Score = 36.6 bits (83), Expect = 0.016 Identities = 17/21 (80%), Positives = 18/21 (85%) Frame = -1 Query: 353 LEMFYALKYRSLAAAVPLAVD 291 LEMFYALKYR LA +VPLA D Sbjct: 787 LEMFYALKYRKLAESVPLAKD 807
>SUS1_MAIZE (P04712) Sucrose synthase 1 (EC 2.4.1.13) (Sucrose-UDP| glucosyltransferase 1) (Shrunken-1) Length = 802 Score = 36.6 bits (83), Expect = 0.016 Identities = 16/21 (76%), Positives = 19/21 (90%) Frame = -1 Query: 353 LEMFYALKYRSLAAAVPLAVD 291 +EMFYALKYRSLA+ VPL+ D Sbjct: 782 IEMFYALKYRSLASQVPLSFD 802
>SUSY_LYCES (P49037) Sucrose synthase (EC 2.4.1.13) (Sucrose-UDP| glucosyltransferase) Length = 805 Score = 36.2 bits (82), Expect = 0.020 Identities = 16/21 (76%), Positives = 18/21 (85%) Frame = -1 Query: 353 LEMFYALKYRSLAAAVPLAVD 291 LEMFYALKYR +A AVPLA + Sbjct: 785 LEMFYALKYRKMAEAVPLAAE 805
>SUS1_SOLTU (P10691) Sucrose synthase (EC 2.4.1.13) (Sucrose-UDP| glucosyltransferase) (SS16) Length = 805 Score = 36.2 bits (82), Expect = 0.020 Identities = 16/21 (76%), Positives = 18/21 (85%) Frame = -1 Query: 353 LEMFYALKYRSLAAAVPLAVD 291 LEMFYALKYR +A AVPLA + Sbjct: 785 LEMFYALKYRKMAEAVPLAAE 805
>SUSY_SOYBN (P13708) Sucrose synthase (EC 2.4.1.13) (Sucrose-UDP| glucosyltransferase) (Nodulin-100) Length = 805 Score = 35.8 bits (81), Expect = 0.027 Identities = 16/21 (76%), Positives = 18/21 (85%) Frame = -1 Query: 353 LEMFYALKYRSLAAAVPLAVD 291 LEMFYALKYR LA +VPLA + Sbjct: 785 LEMFYALKYRKLAESVPLAAE 805
>SUS2_DAUCA (O49845) Sucrose synthase isoform II (EC 2.4.1.13) (Sucrose-UDP| glucosyltransferase 2) (Susy*Dc2) Length = 801 Score = 35.8 bits (81), Expect = 0.027 Identities = 17/21 (80%), Positives = 19/21 (90%) Frame = -1 Query: 353 LEMFYALKYRSLAAAVPLAVD 291 LEMF ALKYR+LA +VPLAVD Sbjct: 781 LEMFCALKYRNLAESVPLAVD 801
>SUSY_BETVU (Q42652) Sucrose synthase (EC 2.4.1.13) (Sucrose-UDP| glucosyltransferase) (Fragment) Length = 766 Score = 35.8 bits (81), Expect = 0.027 Identities = 17/25 (68%), Positives = 19/25 (76%) Frame = -1 Query: 353 LEMFYALKYRSLAAAVPLAVDGESS 279 LEMFY LK+R LA +VPLA D E S Sbjct: 731 LEMFYILKFRDLANSVPLATDEEPS 755
>SUS2_SOLTU (P49039) Sucrose synthase (EC 2.4.1.13) (Sucrose-UDP| glucosyltransferase) (SS65) Length = 805 Score = 35.0 bits (79), Expect = 0.045 Identities = 16/21 (76%), Positives = 18/21 (85%) Frame = -1 Query: 353 LEMFYALKYRSLAAAVPLAVD 291 LEMFYALK+R LA VPLAV+ Sbjct: 785 LEMFYALKFRKLAQLVPLAVE 805
>SUS2_ARATH (Q00917) Sucrose synthase (EC 2.4.1.13) (Sucrose-UDP| glucosyltransferase) Length = 805 Score = 33.9 bits (76), Expect = 0.10 Identities = 14/21 (66%), Positives = 18/21 (85%) Frame = -1 Query: 353 LEMFYALKYRSLAAAVPLAVD 291 LEMFY+LK+R LA ++PLA D Sbjct: 783 LEMFYSLKFRDLANSIPLATD 803
>SUS1_ARATH (P49040) Sucrose synthase (EC 2.4.1.13) (Sucrose-UDP| glucosyltransferase) Length = 806 Score = 31.2 bits (69), Expect = 0.66 Identities = 17/21 (80%), Positives = 17/21 (80%) Frame = -1 Query: 353 LEMFYALKYRSLAAAVPLAVD 291 LEMFYALKYR L AVPLA D Sbjct: 787 LEMFYALKYRPL--AVPLAQD 805
>SUS2_PEA (O24301) Sucrose synthase 2 (EC 2.4.1.13) (Sucrose-UDP| glucosyltransferase 2) Length = 809 Score = 30.4 bits (67), Expect = 1.1 Identities = 13/19 (68%), Positives = 16/19 (84%) Frame = -1 Query: 353 LEMFYALKYRSLAAAVPLA 297 LEMFY LK+R LA +VP+A Sbjct: 789 LEMFYILKFRDLANSVPIA 807
>COBQ_VIBF1 (Q5E0T7) Cobyric acid synthase| Length = 495 Score = 29.3 bits (64), Expect = 2.5 Identities = 18/63 (28%), Positives = 29/63 (46%) Frame = +1 Query: 25 RQRNIALNSLMKDEHHGQAFIRGGWHEPASSTAQDLTNVPRHXXAHPTTDRPNENYGRQI 204 + +N+ALNS + ++ GG A + D V H +P +PN + G Q+ Sbjct: 40 KPQNMALNSAVTED--------GGEIGRAQALQADAARVKPHVHMNPILLKPNTDIGAQV 91 Query: 205 IAQ 213 I Q Sbjct: 92 IVQ 94
>GSPJ_VIBCH (P45776) General secretion pathway protein J precursor (Cholera| toxin secretion protein epsJ) Length = 221 Score = 29.3 bits (64), Expect = 2.5 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = +1 Query: 49 SLMKDEHHGQAFIRGGWHEP 108 SL+ + HG F+R GWH P Sbjct: 95 SLLDSDQHGLLFVRLGWHNP 114
>TOP1_AERPE (Q9YB01) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| (Omega-protein) (Relaxing enzyme) (Untwisting enzyme) (Swivelase) Length = 673 Score = 28.9 bits (63), Expect = 3.3 Identities = 14/43 (32%), Positives = 22/43 (51%) Frame = +2 Query: 74 GRRLFEAAGMNQQAALPKTXRMCRDXXXHTPRQTDQMKTTVDK 202 GRR+ +AG Q L + R R+ H P+ + +K T +K Sbjct: 183 GRRVILSAGRVQSPTLVEAYRRWREINLHVPKASVAVKITAEK 225
>CAD_DROME (P09085) Homeotic protein caudal| Length = 427 Score = 28.5 bits (62), Expect = 4.3 Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%) Frame = +1 Query: 67 HHGQAFIRGGWHEPASSTAQD-LTNVP 144 H A G WH PASSTA + + NVP Sbjct: 73 HSAAAASAGEWHSPASSTADNFVQNVP 99
>FCR1_CANAL (O93870) Fluconazole resistance protein 1| Length = 517 Score = 28.5 bits (62), Expect = 4.3 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 7/72 (9%) Frame = +1 Query: 22 DRQRNIALNSLMKDEHHGQAFIRGGWHEPASSTAQDLTNVP-------RHXXAHPTTDRP 180 D RN+ +S + EH G+AFI P +S Q T+ P + P++D Sbjct: 175 DPNRNLKSSSRLFAEHKGEAFI----GSPVTSPQQMPTSNPFRRTSMFKEELESPSSDHY 230 Query: 181 NENYGRQIIAQP 216 NE+ Q + +P Sbjct: 231 NESIFSQSVDEP 242
>SDS3_MOUSE (Q8BR65) Sin3 histone deacetylase corepressor complex component| SDS3 (Suppressor of defective silencing 3 protein homolog) Length = 328 Score = 28.1 bits (61), Expect = 5.6 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%) Frame = +3 Query: 168 DRQTK*KLR*TNHSAADTSPSRSMNAPSSCP----ESALVAAALAVDRQWNCSSQATVLE 335 D +T KL+ A+ +SP P+ P E+ + L D++W SQA LE Sbjct: 219 DLRTLNKLKSPKRPASPSSPEHLPATPAESPAQRFEARIEDGKLYYDKRWYHKSQAIYLE 278 Query: 336 SVEH 347 S ++ Sbjct: 279 SKDN 282
>SDS3_HUMAN (Q9H7L9) Sin3 histone deacetylase corepressor complex component| SDS3 (Suppressor of defective silencing 3 protein homolog) Length = 328 Score = 28.1 bits (61), Expect = 5.6 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%) Frame = +3 Query: 168 DRQTK*KLR*TNHSAADTSPSRSMNAPSSCP----ESALVAAALAVDRQWNCSSQATVLE 335 D +T KL+ A+ +SP P+ P E+ + L D++W SQA LE Sbjct: 219 DLRTLNKLKSPKRPASPSSPEHLPATPAESPAQRFEARIEDGKLYYDKRWYHKSQAIYLE 278 Query: 336 SVEH 347 S ++ Sbjct: 279 SKDN 282
>HSCC_ECOLI (P77319) Chaperone protein hscC (Hsc62)| Length = 556 Score = 28.1 bits (61), Expect = 5.6 Identities = 17/68 (25%), Positives = 31/68 (45%) Frame = -3 Query: 207 YDLSTVVFIWSVCRGVCXXMSRHIRXVLGSAACWFMPAASNKRLPVVFIFHQRVQCNVSL 28 YD ST+V + + + C S I V+ + C + R V IF ++ N ++ Sbjct: 328 YDPSTIVALGAAIQAACRLRSEDIEEVILTDICPYSLGVEVNRQGVSGIFSPIIERNTTV 387 Query: 27 SVSSLYSH 4 VS + ++ Sbjct: 388 PVSRVETY 395
>HXA3_HUMAN (O43365) Homeobox protein Hox-A3 (Hox-1E)| Length = 443 Score = 28.1 bits (61), Expect = 5.6 Identities = 19/60 (31%), Positives = 25/60 (41%) Frame = +1 Query: 91 GGWHEPASSTAQDLTNVPRHXXAHPTTDRPNENYGRQIIAQPTLHPPAR*MRPLHAPNPR 270 G +H PA S P HP +E R + A P+ PP+ PLH P P+ Sbjct: 43 GEYHRPACSLQS-----PSSAGGHPKAHELSEACLRTLSAPPS-QPPSLGEPPLHPPPPQ 96
>ZDH19_MOUSE (Q810M5) Probable palmitoyltransferase ZDHHC19 (EC 2.3.1.-) (Zinc| finger DHHC domain-containing protein 19) (DHHC-19) Length = 347 Score = 27.7 bits (60), Expect = 7.3 Identities = 8/19 (42%), Positives = 13/19 (68%) Frame = -1 Query: 98 QPPRINACPWCSSFIREFN 42 +PPR CPWC+ + +F+ Sbjct: 121 RPPRTYHCPWCNICVEDFD 139
>ZDH19_HUMAN (Q8WVZ1) Probable palmitoyltransferase ZDHHC19 (EC 2.3.1.-) (Zinc| finger DHHC domain-containing protein 19) (DHHC-19) Length = 282 Score = 27.7 bits (60), Expect = 7.3 Identities = 8/19 (42%), Positives = 13/19 (68%) Frame = -1 Query: 98 QPPRINACPWCSSFIREFN 42 +PPR CPWC+ + +F+ Sbjct: 121 RPPRTYHCPWCNICVEDFD 139
>ZIPA_ECOLI (P77173) Cell division protein zipA| Length = 328 Score = 27.3 bits (59), Expect = 9.5 Identities = 20/70 (28%), Positives = 26/70 (37%), Gaps = 1/70 (1%) Frame = +1 Query: 61 DEHHGQAFIRGGWHEPASSTAQDLTNVPRHXXAHPTTDRPNEN-YGRQIIAQPTLHPPAR 237 DE G+ + H PA N H A P+ + Y QP PP Sbjct: 60 DEGVGEVRVHRVNHAPA--------NAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEA 111 Query: 238 *MRPLHAPNP 267 + P HAP+P Sbjct: 112 QVPPQHAPHP 121
>GRIP2_HUMAN (Q9C0E4) Glutamate receptor-interacting protein 2 (GRIP2 protein)| Length = 1043 Score = 27.3 bits (59), Expect = 9.5 Identities = 15/51 (29%), Positives = 21/51 (41%) Frame = +3 Query: 117 HCPRPXECAETXXXTPHDRQTK*KLR*TNHSAADTSPSRSMNAPSSCPESA 269 H PRP C TP + L T S+ + + S N PS+ P + Sbjct: 363 HSPRPGHCRMPTWATPAGQDQSRSLSSTPFSSPTLNHAFSCNNPSTLPRGS 413 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,265,138 Number of Sequences: 219361 Number of extensions: 790611 Number of successful extensions: 2033 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 1833 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2008 length of database: 80,573,946 effective HSP length: 93 effective length of database: 60,173,373 effective search space used: 1444160952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
