ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal4m04 |
|---|---|
| Clone Library Name | barley_pub |
>PSBR_HORVU (Q40070) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 138 Score = 162 bits (409), Expect = 4e-40 Identities = 78/85 (91%), Positives = 78/85 (91%) Frame = -1 Query: 428 SLVIXXXXXXXVQTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIY 249 SLVI VQTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIY Sbjct: 34 SLVIVAKKAKKVQTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIY 93 Query: 248 TPEEWSPSGDVYVGGKTGLFLWAVT 174 TPEEWSPSGDVYVGGKTGLFLWAVT Sbjct: 94 TPEEWSPSGDVYVGGKTGLFLWAVT 118
>PSBR_SOLTU (P06183) Photosystem II 10 kDa polypeptide, chloroplast precursor| (Light-inducible tissue-specific ST-LS1 protein) Length = 138 Score = 119 bits (298), Expect = 3e-27 Identities = 53/73 (72%), Positives = 61/73 (83%) Frame = -1 Query: 392 QTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVY 213 +T +PYG G +A ++GVDASGR KGKGVYQ+ DKYGANVDGYSPIY +EWSPSGDVY Sbjct: 46 KTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVY 105 Query: 212 VGGKTGLFLWAVT 174 VGG TGL +WAVT Sbjct: 106 VGGTTGLAIWAVT 118
>PSBR_LYCES (Q40163) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 138 Score = 119 bits (298), Expect = 3e-27 Identities = 53/73 (72%), Positives = 61/73 (83%) Frame = -1 Query: 392 QTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVY 213 +T +PYG G +A ++GVDASGR KGKGVYQ+ DKYGANVDGYSPIY +EWSPSGDVY Sbjct: 46 KTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVY 105 Query: 212 VGGKTGLFLWAVT 174 VGG TGL +WAVT Sbjct: 106 VGGTTGLAIWAVT 118
>PSBR_TOBAC (Q40519) Photosystem II 10 kDa polypeptide, chloroplast precursor| (PII10) Length = 136 Score = 118 bits (295), Expect = 7e-27 Identities = 52/73 (71%), Positives = 61/73 (83%) Frame = -1 Query: 392 QTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVY 213 +T +PYG G ++ ++GVDASGR KGKGVYQF DKYGANVDGYSPIY ++WSPSGDVY Sbjct: 44 KTDKPYGINGSMSLRDGVDASGRKQKGKGVYQFVDKYGANVDGYSPIYNTDDWSPSGDVY 103 Query: 212 VGGKTGLFLWAVT 174 VGG TGL +WAVT Sbjct: 104 VGGTTGLAIWAVT 116
>PSBR_SPIOL (P10690) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 140 Score = 114 bits (286), Expect = 8e-26 Identities = 51/86 (59%), Positives = 62/86 (72%) Frame = -1 Query: 431 ASLVIXXXXXXXVQTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPI 252 AS + ++ +P G GGG+ ++GVD+SGR GKGVYQF DKYGANVDGYSPI Sbjct: 35 ASFTVRASGVKKIKVDKPLGIGGGMKLRDGVDSSGRKPTGKGVYQFVDKYGANVDGYSPI 94 Query: 251 YTPEEWSPSGDVYVGGKTGLFLWAVT 174 Y EEW+P+GDVY GG TGL +WAVT Sbjct: 95 YNEEEWAPTGDVYAGGTTGLLIWAVT 120
>PSBR_BRACM (P49108) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 141 Score = 107 bits (267), Expect = 1e-23 Identities = 48/73 (65%), Positives = 57/73 (78%) Frame = -1 Query: 392 QTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVY 213 +T +P+G G + ++GVDASGR KG GVY+F DKYGANVDGYSPIY +EWS SGDVY Sbjct: 49 KTDKPFGVNGSMDLRDGVDASGRKGKGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVY 108 Query: 212 VGGKTGLFLWAVT 174 GG TGL +WAVT Sbjct: 109 KGGVTGLAIWAVT 121
>PSBR_ARATH (P27202) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 140 Score = 105 bits (261), Expect = 6e-23 Identities = 47/73 (64%), Positives = 56/73 (76%) Frame = -1 Query: 392 QTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVY 213 +T +P+G G + ++GVDASGR KG GVY++ DKYGANVDGYSPIY EWS SGDVY Sbjct: 48 KTDKPFGINGSMDLRDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVY 107 Query: 212 VGGKTGLFLWAVT 174 GG TGL +WAVT Sbjct: 108 KGGVTGLAIWAVT 120
>AFSK_STRCO (P54741) Serine/threonine protein kinase afsK (EC 2.7.11.1)| Length = 799 Score = 32.0 bits (71), Expect = 0.65 Identities = 31/103 (30%), Positives = 40/103 (38%), Gaps = 9/103 (8%) Frame = +1 Query: 148 APPSRIPA---RVTAQRNSPVFPPT*TSPLGD-----HSSGVYIGLYPSTFAPYLSANW* 303 APP+ +PA V A PV P P+G + P A L+A+W Sbjct: 341 APPAHVPAVPAPVGAPDGGPVRLPGAAVPIGPGPRVADMRAAAVAAPPPESA--LAASWS 398 Query: 304 TPFPLATLPDASTPSLNATPPPG-P*GWAVWTFFAFLATMTND 429 P P D + P+ PP P GW W F M+ND Sbjct: 399 RPRPGVNGADPAVPAPAPAPPEASPAGWRPWRF-----RMSND 436
>IF2_CORGL (Q8NP40) Translation initiation factor IF-2| Length = 1004 Score = 30.4 bits (67), Expect = 1.9 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = -1 Query: 365 GGVAFKEGVDASGRVAKGKGVYQFADKYGAN 273 GGV +G A+ R+A+G + FADK GA+ Sbjct: 400 GGVRLPDGKGATIRLARGASLADFADKIGAD 430
>RPB1_CRIGR (P11414) DNA-directed RNA polymerase II largest subunit (EC| 2.7.7.6) (RPB1) (Fragment) Length = 467 Score = 29.6 bits (65), Expect = 3.2 Identities = 14/40 (35%), Positives = 22/40 (55%) Frame = -1 Query: 344 GVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPS 225 G+ A+GR G F+ ++ G+SP Y+P WSP+ Sbjct: 27 GLGAAGRSGMTPGAAGFSPSAASDASGFSPGYSP-AWSPT 65
>CELR1_MOUSE (O35161) Cadherin EGF LAG seven-pass G-type receptor 1 precursor| Length = 3034 Score = 29.6 bits (65), Expect = 3.2 Identities = 16/51 (31%), Positives = 22/51 (43%) Frame = -3 Query: 423 GHSGQEGEEGPDCPTLRAWWWSGVQGRRRCVWKGSQGEGCLPVCRQVWSKC 271 GH GQ E D P + WW + V G C + +G P C + +C Sbjct: 1954 GHYGQYCENKVDLPCPKGWWGNPVCGPCHC----AVSQGFDPDCNKTNGQC 2000
>ALB2_PEA (P08688) Albumin-2 (PA2)| Length = 231 Score = 29.6 bits (65), Expect = 3.2 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = -1 Query: 362 GVAFKEGVDASGRVAKGKGVYQFADKYGANVD 267 G F+ G+DA+ R +GK VY F A +D Sbjct: 114 GTVFENGIDAAYRSTRGKEVYLFKGDQYARID 145
>NTHL1_HUMAN (P78549) Endonuclease III-like protein 1 (EC 4.2.99.18)| Length = 312 Score = 29.6 bits (65), Expect = 3.2 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%) Frame = -3 Query: 345 RRRCVWKGS---QGEGCLPVCRQVWSKC*WVQPYIHTRRVVSKWRRLCWRKDGAVS-LGS 178 R R ++GS +GEG P+ VW W Q ++ R + +K KD V LG+ Sbjct: 63 RLRVAYEGSDSEKGEGAEPLKVPVWEPQDWQQQLVNIRAMRNK-------KDAPVDHLGT 115 Query: 177 DSCWNSA 157 + C++S+ Sbjct: 116 EHCYDSS 122
>METX_RALSO (Q8Y3F3) Homoserine O-acetyltransferase (EC 2.3.1.31) (Homoserine| O-trans-acetylase) (Homoserine transacetylase) (HTA) Length = 403 Score = 29.6 bits (65), Expect = 3.2 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Frame = -1 Query: 392 QTAQPYGPGGGVAFKEG-VDASGRVAKGKGVYQFADKYGANVDG 264 QT QPYG V E V+A RVA G+ QFA G ++ G Sbjct: 138 QTGQPYGARFPVVTVEDWVNAQARVADRFGIRQFAAVMGGSLGG 181
>TF7L1_MOUSE (Q9Z1J1) Transcription factor 7-like 1 (HMG box transcription| factor 3) (TCF-3) (mTCF-3) Length = 584 Score = 29.3 bits (64), Expect = 4.2 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 4/64 (6%) Frame = +1 Query: 193 SPVFPPT*TSPLGDHSSGVYIGLYPSTFAPYL----SANW*TPFPLATLPDASTPSLNAT 360 SP PPT SP D +G+ +PS +PY A P PL L + + Sbjct: 200 SPASPPTHLSPEIDPKTGIPRPPHPSELSPYYPLSPGAVGQIPHPLGWLVPQQGQPMYSL 259 Query: 361 PPPG 372 PP G Sbjct: 260 PPGG 263
>BARH1_DROAN (P22544) Homeobox protein B-H1 (Homeobox BarH1 protein)| Length = 606 Score = 29.3 bits (64), Expect = 4.2 Identities = 25/77 (32%), Positives = 31/77 (40%), Gaps = 3/77 (3%) Frame = +1 Query: 151 PPSRIPARVTAQRNSPV---FPPT*TSPLGDHSSGVYIGLYPSTFAPYLSANW*TPFPLA 321 PP A T SP+ P SP G G+ P + SA+ P PLA Sbjct: 519 PPPSSAAAATGGSPSPIGGLIKPLAGSPTG--------GMPPHHPSRPDSASPPLPLPLA 570 Query: 322 TLPDASTPSLNATPPPG 372 P +P+LN PPG Sbjct: 571 RPPSTPSPTLNPGSPPG 587
>ARI5B_HUMAN (Q14865) AT-rich interactive domain-containing protein 5B (ARID| domain-containing protein 5B) (Mrf1-like) (Modulator recognition factor 2) (MRF-2) Length = 1188 Score = 29.3 bits (64), Expect = 4.2 Identities = 17/56 (30%), Positives = 26/56 (46%) Frame = +2 Query: 56 SALLYTSFGA*LGLLHIGFRKPRR*YCRQEEHRPAEFQQESLPRETAPSFLQHKRR 223 S++L F LG + + R P+ YCR P + ES+ E AP+ R+ Sbjct: 199 SSILTDQFALALGGIAVVSRNPQILYCRDTFDHPTLIENESICDEFAPNLKGRPRK 254
>GP112_HUMAN (Q8IZF6) Probable G-protein coupled receptor 112| Length = 2799 Score = 29.3 bits (64), Expect = 4.2 Identities = 15/44 (34%), Positives = 23/44 (52%) Frame = +1 Query: 163 IPARVTAQRNSPVFPPT*TSPLGDHSSGVYIGLYPSTFAPYLSA 294 +P + A +P T SPL S+G + +TF+P+LSA Sbjct: 1595 VPTTIMAGIVTPFVGTTAFSPLSSKSTGAISSIPKTTFSPFLSA 1638
>GFI1_DROME (Q9N658) Zinc finger protein sens (Protein senseless)| Length = 541 Score = 28.9 bits (63), Expect = 5.5 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = +2 Query: 131 YCRQEEHRPAEFQQESLPRETAPSFLQHKRRHLETT 238 Y R + +P + QQ+ L + P QH+++H ++T Sbjct: 351 YMRNQHQQPQQQQQQQLHHQQQPQQHQHQQQHPDST 386
>BCHZ_RHOGE (Q9JPB9) Chlorophyllide reductase subunit Z (EC 1.18.-.-) (Chlorin| reductase subunit Z) Length = 487 Score = 28.9 bits (63), Expect = 5.5 Identities = 15/33 (45%), Positives = 17/33 (51%) Frame = +3 Query: 276 CSILVGKLVNTLPLGYPSRRIDAFLERHSTTRP 374 C+ L L N LPLG RIDA R +RP Sbjct: 396 CNALFDALFNILPLGTELDRIDATPSRRGDSRP 428
>ARI5B_MOUSE (Q8BM75) AT-rich interactive domain-containing protein 5B (ARID| domain-containing protein 5B) (MRF1-like) (Modulator recognition factor protein 2) (MRF-2) (Developmentally and sexually retarded with transient immune abnormalities protein) Length = 1188 Score = 28.9 bits (63), Expect = 5.5 Identities = 17/56 (30%), Positives = 26/56 (46%) Frame = +2 Query: 56 SALLYTSFGA*LGLLHIGFRKPRR*YCRQEEHRPAEFQQESLPRETAPSFLQHKRR 223 S++L F LG + + R P+ YCR P + ES+ E AP+ R+ Sbjct: 199 SSILTDQFALALGGIAVVSRNPQILYCRDTFDHPTLIENESVCDEFAPNLKGRPRK 254
>MURI_RHILO (Q98NP9) Glutamate racemase (EC 5.1.1.3)| Length = 262 Score = 28.5 bits (62), Expect = 7.2 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Frame = +2 Query: 170 QESLPRETAPSFLQHKRRHLETTLLVCI*GCTH-QHLLHTCRQTGKHPSPWL 322 +E++ E AP F++H+ + +L CTH L++ R+T P W+ Sbjct: 163 EEAVRAEIAPCFMEHEGLRTDIVVL----ACTHYPFLVNRMRKTAPWPVDWI 210
>RTCA_AERPE (Q9YES0) Probable RNA 3'-terminal phosphate cyclase (EC 6.5.1.4)| (RNA-3'-phosphate cyclase) (RNA cyclase) Length = 353 Score = 28.5 bits (62), Expect = 7.2 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = -1 Query: 266 GYSPIYTPEEWSPSGDVYVGGKTGLFLWAV 177 G PI E + P D ++G TG+ +WAV Sbjct: 216 GVDPIVEIEAYKPHRDPHLGPGTGVLVWAV 245
>ZN440_HUMAN (Q8IYI8) Zinc finger protein 440| Length = 595 Score = 28.5 bits (62), Expect = 7.2 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 15/80 (18%) Frame = +2 Query: 152 RPAEFQQESLPRETAPSFLQHKRRHLETTLLVC--------------I*GCTHQHL-LHT 286 +P E+Q+ + S+ +H+R H+ C I TH L+ Sbjct: 254 KPYEYQECGKAFHSPRSYRRHERIHMGEKAYQCKECGKAFTCPRYVRIHERTHSRKNLYE 313 Query: 287 CRQTGKHPSPWLPFQTHRRL 346 C+Q GK S FQTH RL Sbjct: 314 CKQCGKALSSLTSFQTHVRL 333
>TF7L1_HUMAN (Q9HCS4) Transcription factor 7-like 1 (HMG box transcription| factor 3) (TCF-3) Length = 588 Score = 28.1 bits (61), Expect = 9.4 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 4/64 (6%) Frame = +1 Query: 193 SPVFPPT*TSPLGDHSSGVYIGLYPSTFAPYL----SANW*TPFPLATLPDASTPSLNAT 360 SP PPT SP D +G+ +PS +PY A P PL L + + Sbjct: 203 SPGSPPTHLSPEIDPKTGIPRPPHPSELSPYYPLSPGAVGQIPHPLGWLVPQQGQPMYSL 262 Query: 361 PPPG 372 PP G Sbjct: 263 PPGG 266
>IF2_COREF (Q8FPA7) Translation initiation factor IF-2| Length = 964 Score = 28.1 bits (61), Expect = 9.4 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = -1 Query: 365 GGVAFKEGVDASGRVAKGKGVYQFADKYGAN 273 GGV +G + R+A+G + FADK GA+ Sbjct: 360 GGVRLPDGRGQTLRLARGASLSDFADKIGAD 390
>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)| Length = 5179 Score = 28.1 bits (61), Expect = 9.4 Identities = 23/79 (29%), Positives = 30/79 (37%) Frame = +1 Query: 139 TRRAPPSRIPARVTAQRNSPVFPPT*TSPLGDHSSGVYIGLYPSTFAPYLSANW*TPFPL 318 T PP+ P+ T SP T T P S I PS ++ T P Sbjct: 1648 TTTPPPTTTPSPPTTTTPSPPITTTTTPPPTTTPSSP-ITTTPSPPTTTMTTPSPTTTPS 1706 Query: 319 ATLPDASTPSLNATPPPGP 375 + + +TPS TP P P Sbjct: 1707 SPITTTTTPSSTTTPSPPP 1725
>IF2_STRAW (Q82K53) Translation initiation factor IF-2| Length = 1046 Score = 28.1 bits (61), Expect = 9.4 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = -1 Query: 365 GGVAFKEGVDASGRVAKGKGVYQFADKYGAN 273 GGV G S R+++G + FA+K GAN Sbjct: 440 GGVMLPRGNGQSVRLSRGASLTDFAEKIGAN 470 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,004,544 Number of Sequences: 219361 Number of extensions: 1583409 Number of successful extensions: 5582 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 5069 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5559 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2453576370 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
