>SCC12_ARATH (Q9FQ20) Sister chromatid cohesion 1 protein 2 (SCC1 homolog 2)|
           (AtRAD21-1)
          Length = 810

 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 20/44 (45%), Positives = 34/44 (77%)
 Frame = -2

Query: 484 LVHGKTRKEASRMFFETLVLSTKDYIQVEQVNPFDLINVKPVSK 353
           L  G+T+KE++R+F+ETLVL TK Y++V+Q +P+  + +  VS+
Sbjct: 762 LCRGRTQKESARLFYETLVLKTKGYVEVKQNHPYSDVFLMRVSR 805

>SCC13_ARATH (Q9FQ19) Sister chromatid cohesion 1 protein 3 (SCC1 homolog 3)|
           (AtRAD21-2)
          Length = 693

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 20/40 (50%), Positives = 29/40 (72%)
 Frame = -2

Query: 484 LVHGKTRKEASRMFFETLVLSTKDYIQVEQVNPFDLINVK 365
           ++ GKTRK A+RMFFETLVL ++  I ++Q  P+  I +K
Sbjct: 643 ILAGKTRKLAARMFFETLVLKSRGLIDMQQDRPYGDIALK 682

>REC8L_MOUSE (Q8C5S7) Meiotic recombination protein REC8-like 1 (Cohesin Rec8p)|
          Length = 591

 Score = 33.9 bits (76), Expect = 0.24
 Identities = 17/38 (44%), Positives = 25/38 (65%)
 Frame = -2

Query: 466 RKEASRMFFETLVLSTKDYIQVEQVNPFDLINVKPVSK 353
           RK ASR+F+  LVLST+  + VEQ  P+  + ++P  K
Sbjct: 552 RKLASRVFYLLLVLSTQKILLVEQQKPYGPLLIRPGPK 589

>RAD21_SCHPO (P30776) Cohesin subunit rad21 (Double-strand-break repair protein|
           rad21) (SCC1 homolog)
          Length = 628

 Score = 33.5 bits (75), Expect = 0.31
 Identities = 15/27 (55%), Positives = 21/27 (77%)
 Frame = -2

Query: 475 GKTRKEASRMFFETLVLSTKDYIQVEQ 395
           G  R+EA ++FF+ LVL+TKD I V+Q
Sbjct: 581 GCNREEAVQLFFDVLVLATKDVISVKQ 607

>REC8L_HUMAN (O95072) Meiotic recombination protein REC8-like 1 (Cohesin Rec8p)|
          Length = 547

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = -2

Query: 466 RKEASRMFFETLVLSTKDYIQVEQVNPFDLINVKP 362
           R+ A+R+F+  LVLS +  + V+Q  P+  + ++P
Sbjct: 508 RRMAARVFYLLLVLSAQQILHVKQEKPYGRLLIQP 542

>SUCC_CHLCV (Q822A1) Succinyl-CoA synthetase beta chain (EC 6.2.1.5) (SCS-beta)|
          Length = 388

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = -1

Query: 485 ASAWEDSERSFKDVLRDLGVVDEGLHSGGAGE 390
           AS+ E+ +++ K++  D GVV   +H+GG G+
Sbjct: 25  ASSVEEGQQALKELAIDAGVVKVQVHAGGRGK 56

>SCC1_YEAST (Q12158) Sister chromatid cohesion protein 1|
          Length = 566

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -2

Query: 469 TRKEASRMFFETLVLSTKDYIQVEQVNPFDLINV 368
           T++EASR FF+ L L+T+  I + Q   F  I +
Sbjct: 520 TKREASRGFFDILSLATEGCIGLSQTEAFGNIKI 553

>RPOB_GEOSL (Q748Y6) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1370

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -2

Query: 406 QVEQVNPFDLINVKPVSKLLKTDF 335
           +VE + P DLIN KPVS ++K  F
Sbjct: 491 EVENLMPHDLINSKPVSAVVKEFF 514

>SYE_CORGL (Q8NQX9) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA|
           ligase) (GluRS)
          Length = 493

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
 Frame = -1

Query: 479 AWEDSERSFK---DVLRDLGVV-DEGLHSGGAGEPLRFNKRE 366
           A  DSE S+    D LR LG+  DEG+  GG  EP R ++R+
Sbjct: 47  AARDSEESYSAIIDSLRWLGMDWDEGVEKGGPHEPYRQSQRK 88

>AROA2_BURPS (P39915) 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19)|
           (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP
           synthase) (EPSPS)
          Length = 463

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -1

Query: 470 DSERSFKDVLRDLGVVDEGLHSG 402
           D  R+  + LRDLGVV EG H G
Sbjct: 52  DDARAMLNALRDLGVVIEGPHQG 74


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,359,995
Number of Sequences: 219361
Number of extensions: 1185294
Number of successful extensions: 3321
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3321
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3362826254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)