>CESA3_ARATH (Q941L0) Cellulose synthase A catalytic subunit 3 [UDP-forming] (EC|
            2.4.1.12) (AtCesA-3) (Constitutive expression of VSP1
            protein 1) (Isoxaben resistant protein 1) (Ath-B)
          Length = 1065

 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 40/128 (31%), Positives = 64/128 (50%)
 Frame = -1

Query: 550  ILKTLGLSETVFEVTRKESSTSDGGAGTDEADPGLFTFDSAPVFIPVTALSVLNIVALAV 371
            ILK L   +T F VT K +S  DG    D A+  L+ F    + IP T L ++N+V +  
Sbjct: 928  ILKVLAGIDTNFTVTSK-ASDEDG----DFAE--LYLFKWTTLLIPPTTLLIVNLVGVVA 980

Query: 370  GAWRAVIGTAAVVHGGPGIGEFVCCGWMVLCFWPFVRGLVSRGKHGIPWSVKVKAGLIVA 191
            G   A+   +     GP  G+     W+++  +PF++GL+ R ++  P  V V + L+ +
Sbjct: 981  GVSYAI--NSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGR-QNRTPTIVVVWSVLLAS 1037

Query: 190  AFVHLCTR 167
             F  L  R
Sbjct: 1038 IFSLLWVR 1045

>CESAA_ARATH (Q9SKJ5) Probable cellulose synthase A catalytic subunit 10|
            [UDP-forming] (EC 2.4.1.12) (AtCesA-10) (AtCesA-13)
          Length = 1065

 Score = 45.8 bits (107), Expect = 8e-05
 Identities = 38/128 (29%), Positives = 64/128 (50%)
 Frame = -1

Query: 550  ILKTLGLSETVFEVTRKESSTSDGGAGTDEADPGLFTFDSAPVFIPVTALSVLNIVALAV 371
            +LK     +T F VT K +S  DG    D A+  L+ F    + IP T + ++N+V +  
Sbjct: 930  LLKVFAGIDTNFTVTSK-ASDEDG----DFAE--LYVFKWTSLLIPPTTILLVNLVGIVA 982

Query: 370  GAWRAVIGTAAVVHGGPGIGEFVCCGWMVLCFWPFVRGLVSRGKHGIPWSVKVKAGLIVA 191
            G   A+   +     GP +G+ +   W+V   +PF++GL+ R ++  P  V V + L+ +
Sbjct: 983  GVSYAI--NSGYQSWGPLMGKLLFAFWVVAHLYPFLKGLLGR-QNRTPTIVIVWSALLAS 1039

Query: 190  AFVHLCTR 167
             F  L  R
Sbjct: 1040 IFSLLWVR 1047

>CESA4_ARATH (Q84JA6) Cellulose synthase A catalytic subunit 4 [UDP-forming] (EC|
            2.4.1.12) (AtCesA-4) (Irregular xylem protein 5) (AtIRX5)
          Length = 1049

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
 Frame = -1

Query: 535  GLSETVFEVTRKESSTSDGGAGTDEADP--GLFTFDSAPVFIPVTALSVLNIVALAVGAW 362
            GL + +F V    + TS G +  DEAD    L+ F    + IP T L +LN+V +  G  
Sbjct: 910  GLLKVLFGVDTNFTVTSKGAS--DEADEFGDLYLFKWTTLLIPPTTLIILNMVGVVAGVS 967

Query: 361  RAVIGTAAVVHGGPGIGEFVCCGWMVLCFWPFVRGLVSR 245
             A+         GP  G+     W+++  +PF++GL+ R
Sbjct: 968  DAI--NNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGR 1004

>CESA7_ARATH (Q9SWW6) Cellulose synthase A catalytic subunit 7 [UDP-forming] (EC|
            2.4.1.12) (AtCesA-7) (Irregular xylem protein 3) (AtIRX3)
          Length = 1026

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 35/128 (27%), Positives = 59/128 (46%)
 Frame = -1

Query: 550  ILKTLGLSETVFEVTRKESSTSDGGAGTDEADPGLFTFDSAPVFIPVTALSVLNIVALAV 371
            +LK L   +T F VT K +   D G         L+ F    + IP T + ++NIV +  
Sbjct: 890  LLKILAGIDTNFTVTSKATDDDDFGE--------LYAFKWTTLLIPPTTVLIINIVGVVA 941

Query: 370  GAWRAVIGTAAVVHGGPGIGEFVCCGWMVLCFWPFVRGLVSRGKHGIPWSVKVKAGLIVA 191
            G   A+         GP  G+     W+++  +PF++GL+ R ++  P  V + + L+ +
Sbjct: 942  GISDAI--NNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGR-QNRTPTIVVIWSVLLAS 998

Query: 190  AFVHLCTR 167
             F  L  R
Sbjct: 999  IFSLLWVR 1006

>CESA5_ARATH (Q8L778) Cellulose synthase A catalytic subunit 5 [UDP-forming] (EC|
            2.4.1.12) (AtCesA-5)
          Length = 1069

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 30/102 (29%), Positives = 47/102 (46%)
 Frame = -1

Query: 550  ILKTLGLSETVFEVTRKESSTSDGGAGTDEADPGLFTFDSAPVFIPVTALSVLNIVALAV 371
            +LK L   ET F VT K        A  D     L+ F    + IP T L ++N++ + V
Sbjct: 933  LLKVLAGVETNFTVTSK--------AADDGEFSELYIFKWTSLLIPPTTLLIINVIGVIV 984

Query: 370  GAWRAVIGTAAVVHGGPGIGEFVCCGWMVLCFWPFVRGLVSR 245
            G   A+  +      GP  G      W++L  +PF++GL+ +
Sbjct: 985  GISDAI--SNGYDSWGPLFGRLFFAFWVILHLYPFLKGLLGK 1024

>CESA1_ARATH (O48946) Cellulose synthase A catalytic subunit 1 [UDP-forming] (EC|
            2.4.1.12) (AtCesA-1) (Radially swollen protein 1)
            (AtRSW1)
          Length = 1081

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 37/128 (28%), Positives = 63/128 (49%)
 Frame = -1

Query: 550  ILKTLGLSETVFEVTRKESSTSDGGAGTDEADPGLFTFDSAPVFIPVTALSVLNIVALAV 371
            +LK L   +T F VT K  +T + G   D A+  L+ F    + IP T + ++N++ +  
Sbjct: 943  LLKVLAGIDTNFTVTSK--ATDEDG---DFAE--LYIFKWTALLIPPTTVLLVNLIGIVA 995

Query: 370  GAWRAVIGTAAVVHGGPGIGEFVCCGWMVLCFWPFVRGLVSRGKHGIPWSVKVKAGLIVA 191
            G   AV   +     GP  G+     W++   +PF++GL+ R ++  P  V V + L+ +
Sbjct: 996  GVSYAV--NSGYQSWGPLFGKLFFALWVIAHLYPFLKGLLGR-QNRTPTIVIVWSVLLAS 1052

Query: 190  AFVHLCTR 167
             F  L  R
Sbjct: 1053 IFSLLWVR 1060

>CESA2_ARATH (O48947) Cellulose synthase A catalytic subunit 2 [UDP-forming] (EC|
            2.4.1.12) (AtCesA-2) (Ath-A)
          Length = 1084

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 29/102 (28%), Positives = 47/102 (46%)
 Frame = -1

Query: 550  ILKTLGLSETVFEVTRKESSTSDGGAGTDEADPGLFTFDSAPVFIPVTALSVLNIVALAV 371
            +LK L    T F VT K        A  D A   L+ F    + IP T L ++NI+ + V
Sbjct: 947  LLKVLAGVNTNFTVTSK--------AADDGAFSELYIFKWTTLLIPPTTLLIINIIGVIV 998

Query: 370  GAWRAVIGTAAVVHGGPGIGEFVCCGWMVLCFWPFVRGLVSR 245
            G   A+  +      GP  G      W+++  +PF++G++ +
Sbjct: 999  GVSDAI--SNGYDSWGPLFGRLFFALWVIVHLYPFLKGMLGK 1038

>CESA9_ARATH (Q9SJ22) Probable cellulose synthase A catalytic subunit 9|
            [UDP-forming] (EC 2.4.1.12) (AtCesA-9)
          Length = 1088

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 35/128 (27%), Positives = 56/128 (43%)
 Frame = -1

Query: 550  ILKTLGLSETVFEVTRKESSTSDGGAGTDEADPGLFTFDSAPVFIPVTALSVLNIVALAV 371
            +LK L    T F VT K        A  D     L+ F    + IP T L ++NIV + V
Sbjct: 951  LLKVLAGVSTNFTVTSK--------AADDGEFSELYIFKWTSLLIPPTTLLIINIVGVIV 1002

Query: 370  GAWRAVIGTAAVVHGGPGIGEFVCCGWMVLCFWPFVRGLVSRGKHGIPWSVKVKAGLIVA 191
            G   A+         GP  G      W+++  +PF++GL+ + +  +P  + V + L+ +
Sbjct: 1003 GVSDAI--NNGYDSWGPLFGRLFFALWVIVHLYPFLKGLLGK-QDRVPTIILVWSILLAS 1059

Query: 190  AFVHLCTR 167
                L  R
Sbjct: 1060 ILTLLWVR 1067

>CESA6_ARATH (Q94JQ6) Cellulose synthase A catalytic subunit 6 [UDP-forming] (EC|
            2.4.1.12) (AtCesA-6) (Isoxaben resistant protein 2)
            (Protein PROCUSTE1) (Protein Quill) (AraxCelA)
          Length = 1084

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 28/102 (27%), Positives = 49/102 (48%)
 Frame = -1

Query: 550  ILKTLGLSETVFEVTRKESSTSDGGAGTDEADPGLFTFDSAPVFIPVTALSVLNIVALAV 371
            +LK L   +T F VT K    +D G  +D     L+ F    + IP   L ++N++ + V
Sbjct: 948  LLKVLAGVDTNFTVTSK---AADDGEFSD-----LYLFKWTSLLIPPMTLLIINVIGVIV 999

Query: 370  GAWRAVIGTAAVVHGGPGIGEFVCCGWMVLCFWPFVRGLVSR 245
            G   A+  +      GP  G      W+++  +PF++GL+ +
Sbjct: 1000 GVSDAI--SNGYDSWGPLFGRLFFALWVIIHLYPFLKGLLGK 1039

>CESA8_ARATH (Q8LPK5) Cellulose synthase A catalytic subunit 8 [UDP-forming] (EC|
            2.4.1.12) (AtCesA-8) (Irregular xylem protein 1) (AtIRX1)
          Length = 985

 Score = 38.5 bits (88), Expect = 0.013
 Identities = 28/101 (27%), Positives = 46/101 (45%)
 Frame = -1

Query: 547  LKTLGLSETVFEVTRKESSTSDGGAGTDEADPGLFTFDSAPVFIPVTALSVLNIVALAVG 368
            LK L   +T F VT K +   + G         L+      + IP T+L ++N+V +  G
Sbjct: 848  LKMLAGLDTNFTVTSKTADDLEFGE--------LYIVKWTTLLIPPTSLLIINLVGVVAG 899

Query: 367  AWRAVIGTAAVVHGGPGIGEFVCCGWMVLCFWPFVRGLVSR 245
               A+         GP  G+     W++L  +PF++GL+ R
Sbjct: 900  FSDAL--NKGYEAWGPLFGKVFFAFWVILHLYPFLKGLMGR 938

>TRMB_BIFLO (Q8G3T4) tRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.33)|
           (tRNA(m7G46)-methyltransferase)
          Length = 286

 Score = 34.3 bits (77), Expect = 0.25
 Identities = 16/35 (45%), Positives = 23/35 (65%)
 Frame = -3

Query: 176 LHKELTGRAGHRNIGSVILVLPLEHVTKTQAGIKA 72
           +H+ + G  G +N+GSV + LPLEHV K  A + A
Sbjct: 209 VHEVMDGLDGWKNLGSVTVSLPLEHVGKGNADMAA 243

>UL03_HHV11 (P10187) Protein UL3|
          Length = 235

 Score = 33.9 bits (76), Expect = 0.33
 Identities = 22/65 (33%), Positives = 30/65 (46%)
 Frame = +2

Query: 182 HERSHNQTSLHLDAPRDSMLSPADKPSHERPEAQHHPATAHELSDARATMNDRRSPDDGA 361
           HE   +  +   D+ R + ++  D+P H  PE +   ATA   S  RA        DDG 
Sbjct: 39  HESGISPDTTPADSIRGAAVASPDQPLHGGPERE---ATAPSFSPTRA--------DDGP 87

Query: 362 PCPDG 376
           PC DG
Sbjct: 88  PCTDG 92

>DAF2_MOUSE (Q61476) Complement decay-accelerating factor transmembrane isoform|
           precursor (DAF-TM) (CD55 antigen)
          Length = 407

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 230 DSMLSPADKPSHERPEAQHHPATAHELSDARATMNDRRSPDDG 358
           +S+ +P D+P+ ++P     PAT HE      T  D+   + G
Sbjct: 319 ESVPNPGDQPTPQKPSTVKVPATQHEPDTTTRTSTDKGESNSG 361

>CBRB_DICD3 (Q47085) Achromobactin transport system permease protein cbrB|
          Length = 340

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -1

Query: 460 ADPGLFTFDSAPVFIPVTALSVLNIVALAVGAWRAVIGTA 341
           A PGLF  ++  +F  +  +S+   VA++V  W A  G A
Sbjct: 96  ASPGLFGINAGAMFFLIVCVSLFPKVAMSVWLWSAFAGAA 135

>JHD3D_MOUSE (Q3U2K5) JmjC domain-containing histone demethylation protein 3D|
           (EC 1.14.11.-) (Jumonji domain-containing protein 2D)
          Length = 510

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -3

Query: 218 QGEGWFDCGCVRAPLHKELTGRAGHRNIGSVILVLPLEHVTKTQAGIKACY*RK 57
           + +G    G  +    KE   R  + NI ++++  PL+ V   QAG+   Y +K
Sbjct: 36  ESQGAHRAGLAKVIPPKEWRARQSYDNISNILIATPLQQVVSGQAGVFTQYHKK 89

>VSX1_BOVIN (Q9GMA3) Visual system homeobox 1 (Transcription factor VSX1)|
           (Retinal inner nuclear layer homeobox protein)
           (Homeodomain protein RINX)
          Length = 365

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
 Frame = +2

Query: 152 PGRLVPCAEVHERSHNQTSLHLDAP----RDSMLSPADKPSHERPEAQHHPATAHELSDA 319
           PGR  P A   +RS + ++   D+P     D   SPA  PS  +        TAH+L + 
Sbjct: 122 PGRPPPSAARQKRSESVSTSDEDSPSEDRSDRKASPA--PSKRKKRRHRTVFTAHQLEEL 179

Query: 320 RATMNDRRSPD 352
               ++   PD
Sbjct: 180 EKAFSEAHYPD 190

>SERI1_BOMMO (P07856) Sericin 1 precursor (Silk gum protein)|
          Length = 1186

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
 Frame = -2

Query: 315 SESSCAVAGWCCASGRS*EGLSA---GESMESRGASXXXXXXXXXRSCTSAQGTNRPGWP 145
           ++SS   AG   + G S  G S+   G S+ S G+S            +++ G++  G+ 
Sbjct: 601 TDSSSKSAGSRTSGGSSTYGYSSSHRGGSVSSTGSSSNTDSSTKNAGSSTSGGSSTYGYS 660

Query: 144 SKYWKRNFSSTIGTCNEDSS 85
           S +   + SST  + N DSS
Sbjct: 661 SSHRGGSVSSTGSSSNTDSS 680

>GNAS_HOMAM (O16118) Guanine nucleotide-binding protein G(s), alpha subunit|
           (Adenylate cyclase-stimulating G alpha protein)
          Length = 379

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = -1

Query: 541 TLGLSETVFEVTRKESSTSDGGAGTDEADPGLFTFDSAPVFIPVTALSVLNIV 383
           TLG+ ET F+V +      D G   DE    +  F+     I VTA S  N+V
Sbjct: 189 TLGIFETRFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMV 241

>PKD1_HUMAN (P98161) Polycystin-1 precursor (Autosomal dominant polycystic|
           kidney disease protein 1)
          Length = 4303

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 24/71 (33%), Positives = 28/71 (39%)
 Frame = -1

Query: 511 VTRKESSTSDGGAGTDEADPGLFTFDSAPVFIPVTALSVLNIVALAVGAWRAVIGTAAVV 332
           VT       DG A  D A P        P    VTA+       LA+GA  A++GT   V
Sbjct: 300 VTATRWDFGDGSAEVDAAGPAASHRYVLPGRYHVTAV-------LALGAGSALLGTDVQV 352

Query: 331 HGGPGIGEFVC 299
              P   E VC
Sbjct: 353 EAAPAALELVC 363

>CT151_HUMAN (Q8NC74) Protein C20orf151|
          Length = 664

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 21/54 (38%), Positives = 23/54 (42%), Gaps = 8/54 (14%)
 Frame = +2

Query: 206 SLHLDAPRDSMLSPADKPSHER--------PEAQHHPATAHELSDARATMNDRR 343
           SLHL +P  S L+PA  PS  R         EA   P     L  A A M D R
Sbjct: 297 SLHLQSPHSSPLAPAAAPSDPRLQDLKAREAEAWEEPTELLGLPSALAGMQDLR 350

>ATG9_MAGGR (Q51WZ9) Autophagy-related protein 9|
          Length = 917

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +2

Query: 221 APRDSMLSPADK-PSHERPEAQHHPATAHELSDARATMNDRRSPDD 355
           AP+  +LSP+   PSH RP A   P+T    +   AT + +R  +D
Sbjct: 115 APQHLLLSPSRAGPSHPRPTAVPGPSTRQNQAQWEATRHQQRLHND 160

>IF2_NEIG1 (Q5F797) Translation initiation factor IF-2|
          Length = 943

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 18/67 (26%), Positives = 29/67 (43%)
 Frame = +2

Query: 227 RDSMLSPADKPSHERPEAQHHPATAHELSDARATMNDRRSPDDGAPCPDGEGHNVQH*ER 406
           R     PA+KP    P  ++ P     ++ A+A   DRR+ DD     + +G   +    
Sbjct: 268 RQRPAKPAEKPQAAAPAVENKP-----VNPAKAKKEDRRNRDDEGQGRNAKGKGAKGGRD 322

Query: 407 RHRDENG 427
           R+   NG
Sbjct: 323 RNNARNG 329

>IF2_NEIMB (Q9JYD2) Translation initiation factor IF-2|
          Length = 962

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +2

Query: 227 RDSMLSPADKPSHERPEAQHHPATAHELSDARATMNDRRSPDDGAPCPDGEGHNVQ 394
           R     PA+KP    P  ++ P     ++ A+A   DRR+ DD     +G+G N +
Sbjct: 287 RQRPAKPAEKPQAAAPAVENKP-----VNPAKAKKEDRRNRDD-----EGQGRNAK 332


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,766,425
Number of Sequences: 219361
Number of extensions: 1555044
Number of successful extensions: 4785
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 4633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4774
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4643056080
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)