>IF2_BIFLO (Q8G3Y5) Translation initiation factor IF-2|
          Length = 954

 Score = 33.5 bits (75), Expect = 0.60
 Identities = 23/58 (39%), Positives = 27/58 (46%)
 Frame = +2

Query: 347 PGHIRPCHPHPHPDSQPLH*GPASGKQARTEQHQGPGKRRLRRGRSLQWGTGYPCHGE 520
           PG I    P PHP ++P       G+  R  Q QG G R  R GR  Q G G P  G+
Sbjct: 205 PGDI----PRPHPMARPTADNGRGGRPGRPGQGQGQG-RGFRGGRPGQGGQGGPRPGQ 257

>RERE_HUMAN (Q9P2R6) Arginine-glutamic acid dipeptide repeats protein|
           (Atrophin-1-like protein) (Atrophin-1-related protein)
          Length = 1566

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 23/58 (39%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
 Frame = +2

Query: 332 HQQHKPGHIRPCHPHPHPDSQPLH*G---PASGKQARTEQH-QG-PGKRRLRRGRSLQ 490
           H Q  P    P HP PHP  QPL      P++   A+   H QG PG   L+ G  LQ
Sbjct: 807 HPQRPPSPHPPPHPSPHPPLQPLTGSAGQPSAPSHAQPPLHGQGPPGPHSLQAGPLLQ 864

>SOX1_MOUSE (P53783) SOX-1 protein|
          Length = 391

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +2

Query: 329 RHQQHKPGHIRPCHPHPHP-DSQPLH 403
           RH    P H  P HPH HP + QP+H
Sbjct: 222 RHPHAHPAHPHPHHPHAHPHNPQPMH 247

>BTBDC_HUMAN (Q8IY92) BTB/POZ domain-containing protein 12|
          Length = 1151

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
 Frame = +2

Query: 344 KPGHIRPCHPHP--HPDSQPLH*GPASGKQA----RTEQHQGPG 457
           + GH  P  PHP  HP S PL   P SG +A    R  +H  PG
Sbjct: 654 RQGHRSPSRPHPGGHPHSSPLAPHPISGDRAHFSRRFLKHSPPG 697

>NO75_MEDSA (P11728) Early nodulin 75 (N-75) (NGM-75) (Fragment)|
          Length = 97

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = +2

Query: 317 PLCHRHQQHKPGHIRPCHPHPHPDSQPLH*GPASGK---QARTEQHQGPGKR 463
           PL H   +++P H +P H HP P+ QP +  P   K   +   +++Q P ++
Sbjct: 13  PLEHPPPEYQPPHEKPPHVHPPPEYQPPYQKPPHEKSPYEPPPQEYQPPHEK 64



 Score = 30.0 bits (66), Expect = 6.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 338 QHKPGHIRPCHPHPHPDSQPLH*GP 412
           +++P H +P H HP P+ QP H  P
Sbjct: 73  EYQPPHEKPPHEHPPPEYQPPHEKP 97

>PHLA1_MOUSE (Q62392) Pleckstrin homology-like domain family A member 1 (T-cell|
           death-associated gene 51 protein) (Proline- and
           glutamine-rich protein) (PQR protein)
          Length = 261

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 20/56 (35%), Positives = 21/56 (37%)
 Frame = +2

Query: 317 PLCHRHQQHKPGHIRPCHPHPHPDSQPLH*GPASGKQARTEQHQGPGKRRLRRGRS 484
           P  H HQ   P      HPHPHP   P    P   + A    H  P   RL R  S
Sbjct: 212 PYSHPHQHPHP------HPHPHPHPHP---HPYQLQHAHQPLHSQPQGHRLLRSTS 258

>SLOU_DROME (P22807) Homeobox protein slou (S59/2) (Protein slouch) (Homeobox|
           protein NK-1)
          Length = 659

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 326 HRHQQHKPGHIRPCHPHPHPDSQP 397
           H+H  H   H  P HPHPHP   P
Sbjct: 210 HQHPAHPHSHQHP-HPHPHPHPHP 232



 Score = 29.6 bits (65), Expect = 8.7
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +2

Query: 326 HRHQQHKPGHIRPCHPHPHPDSQP 397
           H+H QH        HPHPHP   P
Sbjct: 207 HQHHQHPAHPHSHQHPHPHPHPHP 230

>BTBD2_HUMAN (Q9BX70) BTB/POZ domain-containing protein 2|
          Length = 525

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 20/60 (33%), Positives = 27/60 (45%)
 Frame = +2

Query: 347 PGHIRPCHPHPHPDSQPLH*GPASGKQARTEQHQGPGKRRLRRGRSLQWGTGYPCHGERY 526
           PG   P  P P  D+Q      A+G + R E+  GPG   L+R  +  W    P   ER+
Sbjct: 55  PGPTPPAPPGPGTDAQ------AAGAE-RAEEAAGPGAAALQREAAYNWQASKPTVQERF 107

>SEPP1_BOVIN (P49907) Selenoprotein P-like protein precursor|
          Length = 402

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 19/51 (37%), Positives = 20/51 (39%)
 Frame = +2

Query: 293 FLAGN*LTPLCHRHQQHKPGHIRPCHPHPHPDSQPLH*GPASGKQARTEQH 445
           FLA    T    +   H   H  P HPHPHP   P H  P  G Q     H
Sbjct: 190 FLATKEKTAEASQRHHHPHPHSHP-HPHPHPHPHP-HPHPHHGHQLHENAH 238

>ODD_DROME (P23803) Protein odd-skipped|
          Length = 392

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = +2

Query: 326 HRHQQHKPGHIRPCHPHPHP 385
           H H  H  GH  P HPHPHP
Sbjct: 150 HPHHHHHHGH--PHHPHPHP 167

>CYAA_NEUCR (Q01631) Adenylate cyclase (EC 4.6.1.1) (ATP pyrophosphate-lyase)|
           (Adenylyl cyclase)
          Length = 2300

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 10/77 (12%)
 Frame = +2

Query: 392 QPLH*GPAS-GKQARTEQHQGPGKRRLRRGRSLQWGTGYPCHGERYWC---------DGG 541
           QP H GP S GK+ R+  +  PG  R  R R+    T +  H   +           D  
Sbjct: 350 QPSHSGPMSTGKEHRSHSYSLPGSGRSHRDRNYSNATDH--HPSTFGSVSTVGGRDRDAS 407

Query: 542 PP*SLPRAALQKPELTP 592
           P  S PR  +  PE+ P
Sbjct: 408 PVPSRPRTPVPAPEVVP 424

>SOX1_HUMAN (O00570) SOX-1 protein|
          Length = 387

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = +2

Query: 332 HQQHKPGHIRPCHPHPHP-DSQPLH 403
           H    P H  P HPH HP + QP+H
Sbjct: 223 HPHRTPAHPHPHHPHAHPHNPQPMH 247

>BARH1_DROAN (P22544) Homeobox protein B-H1 (Homeobox BarH1 protein)|
          Length = 606

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 14/27 (51%), Positives = 14/27 (51%)
 Frame = +2

Query: 317 PLCHRHQQHKPGHIRPCHPHPHPDSQP 397
           PL H H Q  P      HPHPHP S P
Sbjct: 164 PLHHLHPQSHP------HPHPHPHSHP 184

>SYI_SYNEL (Q8DGI7) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 953

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 20/61 (32%), Positives = 28/61 (45%)
 Frame = +2

Query: 335 QQHKPGHIRPCHPHPHPDSQPLH*GPASGKQARTEQHQGPGKRRLRRGRSLQWGTGYPCH 514
           QQ  PG +   H  P   +  LH G A  K  +   +    K +L RGR + +  G+ CH
Sbjct: 46  QQTNPGEVFILHDGPPYANGALHIGHALNKILKDIIN----KYQLLRGRKVHYRPGWDCH 101

Query: 515 G 517
           G
Sbjct: 102 G 102

>PO3F3_HUMAN (P20264) POU domain, class 3, transcription factor 3|
           (Brain-specific homeobox/POU domain protein 1) (Brain-1)
           (Brn-1 protein)
          Length = 500

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 14/36 (38%), Positives = 14/36 (38%)
 Frame = +2

Query: 314 TPLCHRHQQHKPGHIRPCHPHPHPDSQPLH*GPASG 421
           TP    H  H   H  P  PHPH    P H G   G
Sbjct: 264 TPELAEHHHHHHHHAHPHPPHPHHAQGPPHHGGGGG 299

>NO75_PEA (P16329) Early nodulin 75 protein (N-75) (NGM-75) (Fragment)|
          Length = 112

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 338 QHKPGHIRPCHPHPHPDSQPLH*GPASGK 424
           +++P H +P H HP P+ QP H  P   K
Sbjct: 14  EYQPPHEKPPHEHPPPEYQPPHEKPPHEK 42

>RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats protein|
           (Atrophin-2)
          Length = 1558

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 8/68 (11%)
 Frame = +2

Query: 311 LTPLCHRHQQHKPGHIRPCHPHPHPDSQPLH*GPASGKQARTEQH-------QG-PGKRR 466
           + P  H H Q  P    P  P PHP  QP+    A   Q+  + H       QG PG   
Sbjct: 792 VAPAAHTHIQQAPTLHPPRLPSPHPPLQPM---TAPPSQSSAQPHPQPSLHGQGPPGPHS 848

Query: 467 LRRGRSLQ 490
           L+ G  LQ
Sbjct: 849 LQTGPLLQ 856

>ACH3_DROME (P04755) Acetylcholine receptor protein, beta-like subunit 1|
           precursor
          Length = 521

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
 Frame = +2

Query: 329 RHQQHKPGHIRPCHPHP---HPDSQPLH*GPASGKQARTE 439
           R     PG   P HPHP    P   P H     GKQ++ E
Sbjct: 360 RWMMEMPGMSMPAHPHPSYGSPAELPKHISAIGGKQSKME 399

>FOXGA_HUMAN (P55316) Forkhead box protein G1A (Forkhead-related protein FKHL2)|
           (Transcription factor BF-2) (Brain factor 2) (BF2)
           (HFK2)
          Length = 469

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 15/46 (32%), Positives = 18/46 (39%)
 Frame = +2

Query: 317 PLCHRHQQHKPGHIRPCHPHPHPDSQPLH*GPASGKQARTEQHQGP 454
           P  H H  H   H  P  P P P  Q     P   + AR  + +GP
Sbjct: 45  PQHHHHHHHHHHHPPPPAPQPPPPPQQQQPPPPPRRGARRRRRRGP 90


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,635,668
Number of Sequences: 219361
Number of extensions: 1953797
Number of successful extensions: 5331
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 4880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5245
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6541540170
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)