| Clone Name | rbaal5a03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_190821.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1854 Score = 274 bits (138), Expect = 3e-70 Identities = 254/292 (86%), Gaps = 3/292 (1%) Strand = Plus / Minus Query: 341 tccagagctttggtcctatcgatttcaaagtcgatgacaggaagcagactcctgatcgaa 400 |||| |||||| ||||||||||| |||||||||||||||||||||| |||||||| || Sbjct: 1808 tccatagcttttgtcctatcgatctcaaagtcgatgacaggaagcatcctcctgattgat 1749 Query: 401 agaaattctttcctgttaccactgcttggtgaatggctgttacttttgatcaacctgctt 460 || || |||||| |||| |||||||||||||| || || ||||||||| ||||||||||| Sbjct: 1748 agcaactctttcatgttgccactgcttggtgagtgactattacttttgctcaacctgctt 1689 Query: 461 tgcttcatatgtcttgcctttgtgtcaaactcttggcttttgcttataccaggaacgaat 520 ||||| ||||||| | ||| || || |||||||||||||||||||||||||| | |||| Sbjct: 1688 tgcttgctatgtctggacttagtctcgaactcttggcttttgcttataccagggatgaat 1629 Query: 521 ttcctgtacttgacatcccttagcatctcttgttcttgttgtgtcagagcaggtgatgaa 580 |||||||||||||||||||||||||| ||||| |||| ||| || ||| |||||||||| Sbjct: 1628 ttcctgtacttgacatcccttagcatatcttgatcttcttgggtaagaagaggtgatgaa 1569 Query: 581 ---ctgctggctttgtttggagacaatgtgattgaagagcccctttgtgtag 629 |||||||||||||||||||| |||||||||| | |||||||||||||| Sbjct: 1568 ttgctgctggctttgtttggagataatgtgattgtatggcccctttgtgtag 1517
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 274 bits (138), Expect = 3e-70 Identities = 254/292 (86%), Gaps = 3/292 (1%) Strand = Plus / Plus Query: 341 tccagagctttggtcctatcgatttcaaagtcgatgacaggaagcagactcctgatcgaa 400 |||| |||||| ||||||||||| |||||||||||||||||||||| |||||||| || Sbjct: 37892598 tccatagcttttgtcctatcgatctcaaagtcgatgacaggaagcatcctcctgattgat 37892657 Query: 401 agaaattctttcctgttaccactgcttggtgaatggctgttacttttgatcaacctgctt 460 || || |||||| |||| |||||||||||||| || || ||||||||| ||||||||||| Sbjct: 37892658 agcaactctttcatgttgccactgcttggtgagtgactattacttttgctcaacctgctt 37892717 Query: 461 tgcttcatatgtcttgcctttgtgtcaaactcttggcttttgcttataccaggaacgaat 520 ||||| ||||||| | ||| || || |||||||||||||||||||||||||| | |||| Sbjct: 37892718 tgcttgctatgtctggacttagtctcgaactcttggcttttgcttataccagggatgaat 37892777 Query: 521 ttcctgtacttgacatcccttagcatctcttgttcttgttgtgtcagagcaggtgatgaa 580 |||||||||||||||||||||||||| ||||| |||| ||| || ||| |||||||||| Sbjct: 37892778 ttcctgtacttgacatcccttagcatatcttgatcttcttgggtaagaagaggtgatgaa 37892837 Query: 581 ---ctgctggctttgtttggagacaatgtgattgaagagcccctttgtgtag 629 |||||||||||||||||||| |||||||||| | |||||||||||||| Sbjct: 37892838 ttgctgctggctttgtttggagataatgtgattgtatggcccctttgtgtag 37892889 Score = 77.8 bits (39), Expect = 4e-11 Identities = 54/59 (91%) Strand = Plus / Plus Query: 39 tcaaaacttgcattccttgtacaagagctcacaaacacaacaaattgctttttacaata 97 |||||||||||||| |||||||||||||| |||||||||| |||| |||||||||||| Sbjct: 37892243 tcaaaacttgcatttcttgtacaagagctaacaaacacaaagaatttctttttacaata 37892301
>dbj|AP004669.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0491F11 Length = 152274 Score = 274 bits (138), Expect = 3e-70 Identities = 254/292 (86%), Gaps = 3/292 (1%) Strand = Plus / Plus Query: 341 tccagagctttggtcctatcgatttcaaagtcgatgacaggaagcagactcctgatcgaa 400 |||| |||||| ||||||||||| |||||||||||||||||||||| |||||||| || Sbjct: 113954 tccatagcttttgtcctatcgatctcaaagtcgatgacaggaagcatcctcctgattgat 114013 Query: 401 agaaattctttcctgttaccactgcttggtgaatggctgttacttttgatcaacctgctt 460 || || |||||| |||| |||||||||||||| || || ||||||||| ||||||||||| Sbjct: 114014 agcaactctttcatgttgccactgcttggtgagtgactattacttttgctcaacctgctt 114073 Query: 461 tgcttcatatgtcttgcctttgtgtcaaactcttggcttttgcttataccaggaacgaat 520 ||||| ||||||| | ||| || || |||||||||||||||||||||||||| | |||| Sbjct: 114074 tgcttgctatgtctggacttagtctcgaactcttggcttttgcttataccagggatgaat 114133 Query: 521 ttcctgtacttgacatcccttagcatctcttgttcttgttgtgtcagagcaggtgatgaa 580 |||||||||||||||||||||||||| ||||| |||| ||| || ||| |||||||||| Sbjct: 114134 ttcctgtacttgacatcccttagcatatcttgatcttcttgggtaagaagaggtgatgaa 114193 Query: 581 ---ctgctggctttgtttggagacaatgtgattgaagagcccctttgtgtag 629 |||||||||||||||||||| |||||||||| | |||||||||||||| Sbjct: 114194 ttgctgctggctttgtttggagataatgtgattgtatggcccctttgtgtag 114245 Score = 77.8 bits (39), Expect = 4e-11 Identities = 54/59 (91%) Strand = Plus / Plus Query: 39 tcaaaacttgcattccttgtacaagagctcacaaacacaacaaattgctttttacaata 97 |||||||||||||| |||||||||||||| |||||||||| |||| |||||||||||| Sbjct: 113599 tcaaaacttgcatttcttgtacaagagctaacaaacacaaagaatttctttttacaata 113657
>dbj|AP003566.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0008G24 Length = 152736 Score = 274 bits (138), Expect = 3e-70 Identities = 254/292 (86%), Gaps = 3/292 (1%) Strand = Plus / Plus Query: 341 tccagagctttggtcctatcgatttcaaagtcgatgacaggaagcagactcctgatcgaa 400 |||| |||||| ||||||||||| |||||||||||||||||||||| |||||||| || Sbjct: 151846 tccatagcttttgtcctatcgatctcaaagtcgatgacaggaagcatcctcctgattgat 151905 Query: 401 agaaattctttcctgttaccactgcttggtgaatggctgttacttttgatcaacctgctt 460 || || |||||| |||| |||||||||||||| || || ||||||||| ||||||||||| Sbjct: 151906 agcaactctttcatgttgccactgcttggtgagtgactattacttttgctcaacctgctt 151965 Query: 461 tgcttcatatgtcttgcctttgtgtcaaactcttggcttttgcttataccaggaacgaat 520 ||||| ||||||| | ||| || || |||||||||||||||||||||||||| | |||| Sbjct: 151966 tgcttgctatgtctggacttagtctcgaactcttggcttttgcttataccagggatgaat 152025 Query: 521 ttcctgtacttgacatcccttagcatctcttgttcttgttgtgtcagagcaggtgatgaa 580 |||||||||||||||||||||||||| ||||| |||| ||| || ||| |||||||||| Sbjct: 152026 ttcctgtacttgacatcccttagcatatcttgatcttcttgggtaagaagaggtgatgaa 152085 Query: 581 ---ctgctggctttgtttggagacaatgtgattgaagagcccctttgtgtag 629 |||||||||||||||||||| |||||||||| | |||||||||||||| Sbjct: 152086 ttgctgctggctttgtttggagataatgtgattgtatggcccctttgtgtag 152137 Score = 77.8 bits (39), Expect = 4e-11 Identities = 54/59 (91%) Strand = Plus / Plus Query: 39 tcaaaacttgcattccttgtacaagagctcacaaacacaacaaattgctttttacaata 97 |||||||||||||| |||||||||||||| |||||||||| |||| |||||||||||| Sbjct: 151491 tcaaaacttgcatttcttgtacaagagctaacaaacacaaagaatttctttttacaata 151549
>gb|AY108000.1| Zea mays PCO112270 mRNA sequence Length = 823 Score = 260 bits (131), Expect = 5e-66 Identities = 259/301 (86%), Gaps = 3/301 (0%) Strand = Plus / Minus Query: 332 tcgatcatatccagagctttggtcctatcgatttcaaagtcgatgacaggaagcagactc 391 ||||||||||| || ||||| |||| ||||| ||||||||||| ||||||||||| ||| Sbjct: 423 tcgatcatatcaagggcttttatcctgtcgatctcaaagtcgatcacaggaagcagcctc 364 Query: 392 ctgatcgaaagaaattctttcctgttaccactgcttggtgaatggctgttacttttgatc 451 ||||| || || ||||||| ||| |||||||||||||||||||| ||||||||| | Sbjct: 363 ctgattgatagcgtctctttccggttgccactgcttggtgaatggctattacttttgctt 304 Query: 452 aacctgctttgcttcatatgtcttgcctttgtgtcaaactcttggcttttgcttatacca 511 |||||||||||||| |||| ||| |||| ||||||||||| |||||||||||||||||| Sbjct: 303 aacctgctttgcttattatgcctttccttagtgtcaaactcctggcttttgcttatacca 244 Query: 512 ggaacgaatttcctgtacttgacatcccttagcatctcttgttcttgttgtgtcagagca 571 || | |||||||||||||||||||||||||||||| ||||| |||| ||| |||||| | Sbjct: 243 gggatgaatttcctgtacttgacatcccttagcatatcttgatcttcttgcgtcagaaga 184 Query: 572 ggtgatgaa---ctgctggctttgtttggagacaatgtgattgaagagcccctttgtgta 628 ||||||||| |||||| |||||||||||||||||||||||| | || ||||||||| Sbjct: 183 ggtgatgaattgctgctgtttttgtttggagacaatgtgattgaggcccctctttgtgta 124 Query: 629 g 629 | Sbjct: 123 g 123 Score = 85.7 bits (43), Expect = 2e-13 Identities = 67/75 (89%) Strand = Plus / Minus Query: 38 ctcaaaacttgcattccttgtacaagagctcacaaacacaacaaattgctttttacaata 97 ||||||||||| |||||||||||| ||||| | |||||||||||| |||||||||||| Sbjct: 771 ctcaaaacttgtattccttgtacatgagctaagtaacacaacaaatccctttttacaata 712 Query: 98 aaatttccctttcct 112 ||||||| ||||||| Sbjct: 711 aaatttcactttcct 697
>gb|AC130600.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0048I21, complete sequence Length = 137650 Score = 73.8 bits (37), Expect = 6e-10 Identities = 52/57 (91%) Strand = Plus / Minus Query: 468 tatgtcttgcctttgtgtcaaactcttggcttttgcttataccaggaacgaatttcc 524 ||||||||| |||||||||||||||||| || |||||||| ||||| |||||||||| Sbjct: 108837 tatgtcttgactttgtgtcaaactcttgactcttgcttattccagggacgaatttcc 108781 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Minus Query: 341 tccagagctttggtcctatcgatttcaaagtcgatgacaggaagca 386 |||| ||||||||||||||| || | ||||||||||||||||||| Sbjct: 108970 tccaaagctttggtcctatccatctggaagtcgatgacaggaagca 108925
>ref|XM_475271.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1923 Score = 73.8 bits (37), Expect = 6e-10 Identities = 52/57 (91%) Strand = Plus / Minus Query: 468 tatgtcttgcctttgtgtcaaactcttggcttttgcttataccaggaacgaatttcc 524 ||||||||| |||||||||||||||||| || |||||||| ||||| |||||||||| Sbjct: 1753 tatgtcttgactttgtgtcaaactcttgactcttgcttattccagggacgaatttcc 1697 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Minus Query: 341 tccagagctttggtcctatcgatttcaaagtcgatgacaggaagca 386 |||| ||||||||||||||| || | ||||||||||||||||||| Sbjct: 1886 tccaaagctttggtcctatccatctggaagtcgatgacaggaagca 1841
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 73.8 bits (37), Expect = 6e-10 Identities = 52/57 (91%) Strand = Plus / Minus Query: 468 tatgtcttgcctttgtgtcaaactcttggcttttgcttataccaggaacgaatttcc 524 ||||||||| |||||||||||||||||| || |||||||| ||||| |||||||||| Sbjct: 20982059 tatgtcttgactttgtgtcaaactcttgactcttgcttattccagggacgaatttcc 20982003 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Minus Query: 341 tccagagctttggtcctatcgatttcaaagtcgatgacaggaagca 386 |||| ||||||||||||||| || | ||||||||||||||||||| Sbjct: 20982192 tccaaagctttggtcctatccatctggaagtcgatgacaggaagca 20982147
>dbj|AK121670.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033067N19, full insert sequence Length = 2746 Score = 73.8 bits (37), Expect = 6e-10 Identities = 52/57 (91%) Strand = Plus / Minus Query: 468 tatgtcttgcctttgtgtcaaactcttggcttttgcttataccaggaacgaatttcc 524 ||||||||| |||||||||||||||||| || |||||||| ||||| |||||||||| Sbjct: 2266 tatgtcttgactttgtgtcaaactcttgactcttgcttattccagggacgaatttcc 2210 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Minus Query: 341 tccagagctttggtcctatcgatttcaaagtcgatgacaggaagca 386 |||| ||||||||||||||| || | ||||||||||||||||||| Sbjct: 2399 tccaaagctttggtcctatccatctggaagtcgatgacaggaagca 2354
>dbj|AK064776.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000B01, full insert sequence Length = 2805 Score = 73.8 bits (37), Expect = 6e-10 Identities = 52/57 (91%) Strand = Plus / Minus Query: 468 tatgtcttgcctttgtgtcaaactcttggcttttgcttataccaggaacgaatttcc 524 ||||||||| |||||||||||||||||| || |||||||| ||||| |||||||||| Sbjct: 2322 tatgtcttgactttgtgtcaaactcttgactcttgcttattccagggacgaatttcc 2266 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Minus Query: 341 tccagagctttggtcctatcgatttcaaagtcgatgacaggaagca 386 |||| ||||||||||||||| || | ||||||||||||||||||| Sbjct: 2455 tccaaagctttggtcctatccatctggaagtcgatgacaggaagca 2410
>ref|NM_121085.1| Arabidopsis thaliana ATP binding / microtubule motor AT5G10470 mRNA, complete cds Length = 3822 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Minus Query: 543 gcatctcttgttcttgttgtgtcaga 568 ||||||| |||||||||||||||||| Sbjct: 1808 gcatctcctgttcttgttgtgtcaga 1783
>gb|AC134046.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0040G18, complete sequence Length = 172281 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 452 aacctgctttgcttcatatgtc 473 |||||||||||||||||||||| Sbjct: 70563 aacctgctttgcttcatatgtc 70542
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 452 aacctgctttgcttcatatgtc 473 |||||||||||||||||||||| Sbjct: 20741746 aacctgctttgcttcatatgtc 20741767
>emb|AL353995.1|ATF12B17 Arabidopsis thaliana DNA chromosome 5, BAC clone F12B17 (ESSA project) Length = 113053 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Minus Query: 543 gcatctcttgttcttgttgtgtcaga 568 ||||||| |||||||||||||||||| Sbjct: 71377 gcatctcctgttcttgttgtgtcaga 71352
>gb|AY100691.1| Arabidopsis thaliana geminivirus replication protein-interacting protein (GRIMP) mRNA, complete cds Length = 3822 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Minus Query: 543 gcatctcttgttcttgttgtgtcaga 568 ||||||| |||||||||||||||||| Sbjct: 1808 gcatctcctgttcttgttgtgtcaga 1783
>gb|AC134887.4| Oryza sativa chromosome 3 BAC OSJNBa0029P07 genomic sequence, complete sequence Length = 142047 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 452 aacctgctttgcttcatatgtc 473 |||||||||||||||||||||| Sbjct: 31856 aacctgctttgcttcatatgtc 31877
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 452 aacctgctttgcttcatatgtc 473 |||||||||||||||||||||| Sbjct: 4579979 aacctgctttgcttcatatgtc 4580000
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 452 aacctgctttgcttcatatgtc 473 |||||||||||||||||||||| Sbjct: 18328489 aacctgctttgcttcatatgtc 18328510
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 452 aacctgctttgcttcatatgtc 473 |||||||||||||||||||||| Sbjct: 13215021 aacctgctttgcttcatatgtc 13215042 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 452 aacctgctttgcttcatatgtc 473 |||||||||||||||||||||| Sbjct: 12145784 aacctgctttgcttcatatgtc 12145763 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 452 aacctgctttgcttcatatgt 472 ||||||||||||||||||||| Sbjct: 11675524 aacctgctttgcttcatatgt 11675544 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 452 aacctgctttgcttcatatgt 472 ||||||||||||||||||||| Sbjct: 11586845 aacctgctttgcttcatatgt 11586865
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 452 aacctgctttgcttcatatgtc 473 |||||||||||||||||||||| Sbjct: 20734775 aacctgctttgcttcatatgtc 20734796
>dbj|AP004784.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0012F14 Length = 168629 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 452 aacctgctttgcttcatatgtc 473 |||||||||||||||||||||| Sbjct: 132209 aacctgctttgcttcatatgtc 132230
>dbj|AP003507.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0468A12 Length = 143018 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 452 aacctgctttgcttcatatgtc 473 |||||||||||||||||||||| Sbjct: 88573 aacctgctttgcttcatatgtc 88552
>dbj|AP005502.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0473F05 Length = 140575 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 452 aacctgctttgcttcatatgtc 473 |||||||||||||||||||||| Sbjct: 14658 aacctgctttgcttcatatgtc 14679
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 452 aacctgctttgcttcatatgtc 473 |||||||||||||||||||||| Sbjct: 4601230 aacctgctttgcttcatatgtc 4601251
>emb|AJ001729.1|ATTH65 Arabidopsis thaliana mRNA for Cdc2a associating protein Length = 1182 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Minus Query: 543 gcatctcttgttcttgttgtgtcaga 568 ||||||| |||||||||||||||||| Sbjct: 392 gcatctcctgttcttgttgtgtcaga 367
>ref|NM_195789.1| Oryza sativa (japonica cultivar-group) putative transposable element (OJ1325D05.26), mRNA Length = 2109 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 452 aacctgctttgcttcatatgt 472 ||||||||||||||||||||| Sbjct: 312 aacctgctttgcttcatatgt 292
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 550 ttgttcttgttgtgtcagagc 570 ||||||||||||||||||||| Sbjct: 4476170 ttgttcttgttgtgtcagagc 4476150
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 550 ttgttcttgttgtgtcagagc 570 ||||||||||||||||||||| Sbjct: 3034316 ttgttcttgttgtgtcagagc 3034336
>gb|AC115686.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OJ1325D05, complete sequence Length = 169500 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 452 aacctgctttgcttcatatgt 472 ||||||||||||||||||||| Sbjct: 132779 aacctgctttgcttcatatgt 132759
>emb|BX640473.9| Zebrafish DNA sequence from clone CH211-201F12 in linkage group 5, complete sequence Length = 193735 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 80 aaattgctttttacaataaaa 100 ||||||||||||||||||||| Sbjct: 175104 aaattgctttttacaataaaa 175124
>gb|AC020632.16| Homo sapiens 3 BAC RP11-333H9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 162029 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 88 ttttacaataaaatttccctt 108 ||||||||||||||||||||| Sbjct: 86480 ttttacaataaaatttccctt 86460
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 452 aacctgctttgcttcatatgt 472 ||||||||||||||||||||| Sbjct: 9055945 aacctgctttgcttcatatgt 9055965
>gb|AC119147.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0027A14, from chromosome 10, complete sequence Length = 175667 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 452 aacctgctttgcttcatatgt 472 ||||||||||||||||||||| Sbjct: 144168 aacctgctttgcttcatatgt 144188
>gb|AC096555.1| Homo sapiens BAC clone RP11-78N15 from 2, complete sequence Length = 155942 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 80 aaattgctttttacaataaaatttc 104 ||||||||||||| ||||||||||| Sbjct: 139177 aaattgctttttataataaaatttc 139201
>dbj|AP004583.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0005N06 Length = 140639 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 452 aacctgctttgcttcatatgt 472 ||||||||||||||||||||| Sbjct: 24066 aacctgctttgcttcatatgt 24086
>dbj|AP005852.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0414E10 Length = 141760 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 452 aacctgctttgcttcatatgt 472 ||||||||||||||||||||| Sbjct: 64731 aacctgctttgcttcatatgt 64751
>emb|AL807388.8| Mouse DNA sequence from clone RP23-255K14 on chromosome X, complete sequence Length = 157955 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 407 tctttcctgttaccactgctt 427 ||||||||||||||||||||| Sbjct: 19383 tctttcctgttaccactgctt 19403
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 452 aacctgctttgcttcatatgt 472 ||||||||||||||||||||| Sbjct: 9061084 aacctgctttgcttcatatgt 9061104
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 atcggcatgccttcgctgcg 199 |||||||||||||||||||| Sbjct: 2105607 atcggcatgccttcgctgcg 2105626
>emb|BX294177.35| Zebrafish DNA sequence from clone CH211-281O13 in linkage group 12, complete sequence Length = 136080 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 aacaaattgctttttacaat 96 |||||||||||||||||||| Sbjct: 38378 aacaaattgctttttacaat 38359
>gb|AC105470.17| Rattus norvegicus 10 BAC CH230-192N7 (Children's Hospital Oakland Research Institute) complete sequence Length = 212491 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 tttccctttccttttcaccc 120 |||||||||||||||||||| Sbjct: 28337 tttccctttccttttcaccc 28318
>gb|AY600625.1| Hepatozoon sp. BV2 18S ribosomal RNA gene, partial sequence Length = 1774 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 80 aaattgctttttacaataaa 99 |||||||||||||||||||| Sbjct: 752 aaattgctttttacaataaa 733
>gb|AC133167.3| Mus musculus BAC clone RP24-211H4 from chromosome 18, complete sequence Length = 159356 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 405 attctttcctgttaccactg 424 |||||||||||||||||||| Sbjct: 91977 attctttcctgttaccactg 91996
>gb|AC124515.4| Mus musculus BAC clone RP23-381E19 from chromosome 13, complete sequence Length = 175354 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 aatttccctttccttttcac 118 |||||||||||||||||||| Sbjct: 134309 aatttccctttccttttcac 134290
>gb|AC098708.3| Mus musculus BAC clone RP23-1I16 from 13, complete sequence Length = 200069 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 aatttccctttccttttcac 118 |||||||||||||||||||| Sbjct: 3135 aatttccctttccttttcac 3116
>gb|U80452.2| Caenorhabditis elegans cosmid C16C8, complete sequence Length = 42300 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 80 aaattgctttttacaataaaattt 103 ||||||||||||| |||||||||| Sbjct: 24388 aaattgctttttaaaataaaattt 24411
>emb|AL606517.14| Human DNA sequence from clone RP11-182I10 on chromosome 1 Contains the 5' end of the JAK1 gene for anus kinase 1 (a protein tyrosine kinase), a NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 4 9kDa (NDUFA4) pseudogene, a SIPL protein (SIPL) pseudogene, part of a novel gene, a solute carrier family 2 (facilitated glucose transporter) member 14 (SLC2A14) pseudogene and a CpG island, complete sequence Length = 74530 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 462 gcttcatatgtcttgcctttgtgt 485 ||||||||||| |||||||||||| Sbjct: 19352 gcttcatatgttttgcctttgtgt 19329
>emb|AL359747.14| Human DNA sequence from clone RP11-107C16 on chromosome 10 Contains the 3' end of a deleted in malignant brain tumors 1 (DMBT1) pseudogene and the 3' end of the ERG-1 gene for estrogen regulated gene 1 (UO-44), complete sequence Length = 33281 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 tcaaagtacccaggacttgg 292 |||||||||||||||||||| Sbjct: 5450 tcaaagtacccaggacttgg 5431
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 atcggcatgccttcgctgcg 199 |||||||||||||||||||| Sbjct: 267194 atcggcatgccttcgctgcg 267213
>emb|BX571959.8| Zebrafish DNA sequence from clone DKEY-46I6 in linkage group 12, complete sequence Length = 116374 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 aacaaattgctttttacaat 96 |||||||||||||||||||| Sbjct: 37031 aacaaattgctttttacaat 37012
>gb|AC109465.3| Homo sapiens chromosome 5 clone RP11-298P6, complete sequence Length = 188150 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 398 gaaagaaattctttcctgtt 417 |||||||||||||||||||| Sbjct: 117448 gaaagaaattctttcctgtt 117467
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 atcggcatgccttcgctgcg 199 |||||||||||||||||||| Sbjct: 2057846 atcggcatgccttcgctgcg 2057827
>gb|AC022274.5|AC022274 Homo sapiens BAC clone RP11-697M17 from 8, complete sequence Length = 190701 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 540 ttagcatctcttgttcttgt 559 |||||||||||||||||||| Sbjct: 84960 ttagcatctcttgttcttgt 84979
>emb|BX247864.10| Zebrafish DNA sequence from clone CH211-225P16, complete sequence Length = 208758 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 ttccctttccttttcacccc 121 |||||||||||||||||||| Sbjct: 79476 ttccctttccttttcacccc 79495
>gb|AY252103.1| Hepatozoon sp. Boiga isolate 1 small subunit ribosomal RNA gene, partial sequence Length = 579 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 80 aaattgctttttacaataaa 99 |||||||||||||||||||| Sbjct: 422 aaattgctttttacaataaa 403
>gb|AF067219.1| Caenorhabditis elegans cosmid R12E2, complete sequence Length = 39439 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 80 aaattgctttttacaataaa 99 |||||||||||||||||||| Sbjct: 7468 aaattgctttttacaataaa 7487
>dbj|AB125503.1| Testudo horsfieldii DNA, CryIB SINE and its flanking sequence of TTh04 Length = 465 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 520 tttcctgtacttgacatccc 539 |||||||||||||||||||| Sbjct: 298 tttcctgtacttgacatccc 279
>emb|AL929018.14| Mouse DNA sequence from clone RP23-253K17 on chromosome 2, complete sequence Length = 189343 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 582 tgctggctttgtttggagac 601 |||||||||||||||||||| Sbjct: 66602 tgctggctttgtttggagac 66583
>emb|BX649594.7| Zebrafish DNA sequence from clone CH211-194N6 in linkage group 18, complete sequence Length = 195263 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 ttccctttccttttcacccc 121 |||||||||||||||||||| Sbjct: 10672 ttccctttccttttcacccc 10653
>emb|AL672097.5| Zebrafish DNA sequence from clone BUSM1-37O5 in linkage group 9, complete sequence Length = 100381 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 tgctttttacaataaaattt 103 |||||||||||||||||||| Sbjct: 33306 tgctttttacaataaaattt 33287
>emb|AL935307.9| Zebrafish DNA sequence from clone DKEY-63P22, complete sequence Length = 234744 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 tgctttttacaataaaattt 103 |||||||||||||||||||| Sbjct: 78954 tgctttttacaataaaattt 78973
>gb|AC149087.4| Mus musculus BAC clone RP23-240E3 from 18, complete sequence Length = 227785 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 405 attctttcctgttaccactg 424 |||||||||||||||||||| Sbjct: 189778 attctttcctgttaccactg 189797
>gb|AY068866.1| Schmidtea mediterranea clone H.17.6g(T3) unknown mRNA sequence Length = 407 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 479 tttgtgtcaaactcttggct 498 |||||||||||||||||||| Sbjct: 319 tttgtgtcaaactcttggct 338 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,185,360 Number of Sequences: 3902068 Number of extensions: 6185360 Number of successful extensions: 129560 Number of sequences better than 10.0: 63 Number of HSP's better than 10.0 without gapping: 63 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 128989 Number of HSP's gapped (non-prelim): 565 length of query: 629 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 606 effective length of database: 17,143,297,704 effective search space: 10388838408624 effective search space used: 10388838408624 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)