ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal5a01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CYF_CHAGL (Q8M9X2) Apocytochrome f precursor 28 4.5
2CXB5_HUMAN (O95377) Gap junction beta-5 protein (Connexin-31.1) ... 28 7.7
3BRO1_CANAL (Q5AJC1) Vacuolar protein-sorting protein BRO1 (BRO d... 28 7.7

>CYF_CHAGL (Q8M9X2) Apocytochrome f precursor|
          Length = 318

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 99  IPIFSTFNLSILSHSYIYTNIIRTNIKRPKGA 4
           IPIF+TFNL   S  Y +    + N + P+ A
Sbjct: 18  IPIFTTFNLLFTSDCYAFPIYAQQNYENPREA 49



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>CXB5_HUMAN (O95377) Gap junction beta-5 protein (Connexin-31.1) (Cx31.1)|
          Length = 273

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = -2

Query: 248 GRNMFXHGKSQGSIVFLSM*YPCSLXFKXXVFS*IQQVFHSMY 120
           GR     GK +G + +    Y CSL FK  V      VFHS Y
Sbjct: 114 GRLYLNPGKKRGGLWWT---YVCSLVFKASVDIAFLYVFHSFY 153



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>BRO1_CANAL (Q5AJC1) Vacuolar protein-sorting protein BRO1 (BRO|
           domain-containing protein 1)
          Length = 945

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -2

Query: 128 SMYFEILKFEYQYFLPLIYQFSAIHI 51
           S +  I+ F+Y+Y+  L Y F+ +H+
Sbjct: 284 SSWISIIYFKYEYYKSLAYYFNGLHL 309


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,401,894
Number of Sequences: 219361
Number of extensions: 535039
Number of successful extensions: 972
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 80,573,946
effective HSP length: 75
effective length of database: 64,121,871
effective search space used: 1538924904
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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