ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal4k17 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY106655.1| Zea mays PCO098527 mRNA sequence Length = 1533 Score = 117 bits (59), Expect = 2e-23 Identities = 68/71 (95%) Strand = Plus / Minus Query: 27 gaccgatctcgtaggcgaggccgctgaaggaggagcagcggtcgccgccggtgagccaga 86 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 241 gaccgatctcgtaggcgaggccgctgaagacggagcagcggtcgccgccggtgagccaga 182 Query: 87 ggaggaaaggg 97 |||||||||| Sbjct: 181 agaggaaaggg 171 Score = 50.1 bits (25), Expect = 0.005 Identities = 25/25 (100%) Strand = Plus / Minus Query: 121 ctggacgaagtagtagaagagctcc 145 ||||||||||||||||||||||||| Sbjct: 135 ctggacgaagtagtagaagagctcc 111
>gb|AC120536.5| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0035N09, complete sequence Length = 129468 Score = 75.8 bits (38), Expect = 8e-11 Identities = 59/66 (89%) Strand = Plus / Plus Query: 27 gaccgatctcgtaggcgaggccgctgaaggaggagcagcggtcgccgccggtgagccaga 86 ||||||||||| || |||| |||||| | ||||||||||||||||||||||||||||| Sbjct: 80715 gaccgatctcgaagaagagggcgctgaggacggagcagcggtcgccgccggtgagccaga 80774 Query: 87 ggagga 92 |||||| Sbjct: 80775 ggagga 80780 Score = 69.9 bits (35), Expect = 5e-09 Identities = 35/35 (100%) Strand = Plus / Plus Query: 58 ggagcagcggtcgccgccggtgagccagaggagga 92 ||||||||||||||||||||||||||||||||||| Sbjct: 108641 ggagcagcggtcgccgccggtgagccagaggagga 108675 Score = 56.0 bits (28), Expect = 8e-05 Identities = 31/32 (96%) Strand = Plus / Plus Query: 61 gcagcggtcgccgccggtgagccagaggagga 92 |||||||| ||||||||||||||||||||||| Sbjct: 24859 gcagcggtggccgccggtgagccagaggagga 24890
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 75.8 bits (38), Expect = 8e-11 Identities = 59/66 (89%) Strand = Plus / Plus Query: 27 gaccgatctcgtaggcgaggccgctgaaggaggagcagcggtcgccgccggtgagccaga 86 ||||||||||| || |||| |||||| | ||||||||||||||||||||||||||||| Sbjct: 13261904 gaccgatctcgaagaagagggcgctgaggacggagcagcggtcgccgccggtgagccaga 13261963 Query: 87 ggagga 92 |||||| Sbjct: 13261964 ggagga 13261969 Score = 69.9 bits (35), Expect = 5e-09 Identities = 35/35 (100%) Strand = Plus / Plus Query: 58 ggagcagcggtcgccgccggtgagccagaggagga 92 ||||||||||||||||||||||||||||||||||| Sbjct: 13289830 ggagcagcggtcgccgccggtgagccagaggagga 13289864 Score = 61.9 bits (31), Expect = 1e-06 Identities = 34/35 (97%) Strand = Plus / Plus Query: 58 ggagcagcggtcgccgccggtgagccagaggagga 92 ||||||||||||||||||||||| ||||||||||| Sbjct: 13336202 ggagcagcggtcgccgccggtgatccagaggagga 13336236 Score = 56.0 bits (28), Expect = 8e-05 Identities = 55/64 (85%) Strand = Plus / Minus Query: 29 ccgatctcgtaggcgaggccgctgaaggaggagcagcggtcgccgccggtgagccagagg 88 |||| ||||||| |||||||| ||||| |||||||| | |||||||||||||||||| Sbjct: 24654241 ccgacctcgtagacgaggccggagaaggcggagcagccggggccgccggtgagccagagc 24654182 Query: 89 agga 92 |||| Sbjct: 24654181 agga 24654178 Score = 56.0 bits (28), Expect = 8e-05 Identities = 31/32 (96%) Strand = Plus / Plus Query: 61 gcagcggtcgccgccggtgagccagaggagga 92 |||||||| ||||||||||||||||||||||| Sbjct: 13206048 gcagcggtggccgccggtgagccagaggagga 13206079 Score = 46.1 bits (23), Expect = 0.075 Identities = 23/23 (100%) Strand = Plus / Minus Query: 152 tggtccacctccacgtacccggt 174 ||||||||||||||||||||||| Sbjct: 24654106 tggtccacctccacgtacccggt 24654084 Score = 46.1 bits (23), Expect = 0.075 Identities = 32/35 (91%) Strand = Plus / Plus Query: 58 ggagcagcggtcgccgccggtgagccagaggagga 92 ||||||||||| ||||||| ||| ||||||||||| Sbjct: 13400272 ggagcagcggttgccgccgttgatccagaggagga 13400306
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 75.8 bits (38), Expect = 8e-11 Identities = 59/66 (89%) Strand = Plus / Plus Query: 27 gaccgatctcgtaggcgaggccgctgaaggaggagcagcggtcgccgccggtgagccaga 86 ||||||||||| || |||| |||||| | ||||||||||||||||||||||||||||| Sbjct: 13342083 gaccgatctcgaagaagagggcgctgaggacggagcagcggtcgccgccggtgagccaga 13342142 Query: 87 ggagga 92 |||||| Sbjct: 13342143 ggagga 13342148 Score = 69.9 bits (35), Expect = 5e-09 Identities = 35/35 (100%) Strand = Plus / Plus Query: 58 ggagcagcggtcgccgccggtgagccagaggagga 92 ||||||||||||||||||||||||||||||||||| Sbjct: 13370009 ggagcagcggtcgccgccggtgagccagaggagga 13370043 Score = 61.9 bits (31), Expect = 1e-06 Identities = 34/35 (97%) Strand = Plus / Plus Query: 58 ggagcagcggtcgccgccggtgagccagaggagga 92 ||||||||||||||||||||||| ||||||||||| Sbjct: 13416381 ggagcagcggtcgccgccggtgatccagaggagga 13416415 Score = 56.0 bits (28), Expect = 8e-05 Identities = 55/64 (85%) Strand = Plus / Minus Query: 29 ccgatctcgtaggcgaggccgctgaaggaggagcagcggtcgccgccggtgagccagagg 88 |||| ||||||| |||||||| ||||| |||||||| | |||||||||||||||||| Sbjct: 24965911 ccgacctcgtagacgaggccggagaaggcggagcagccggggccgccggtgagccagagc 24965852 Query: 89 agga 92 |||| Sbjct: 24965851 agga 24965848 Score = 56.0 bits (28), Expect = 8e-05 Identities = 31/32 (96%) Strand = Plus / Plus Query: 61 gcagcggtcgccgccggtgagccagaggagga 92 |||||||| ||||||||||||||||||||||| Sbjct: 13286227 gcagcggtggccgccggtgagccagaggagga 13286258 Score = 46.1 bits (23), Expect = 0.075 Identities = 23/23 (100%) Strand = Plus / Minus Query: 152 tggtccacctccacgtacccggt 174 ||||||||||||||||||||||| Sbjct: 24965776 tggtccacctccacgtacccggt 24965754 Score = 46.1 bits (23), Expect = 0.075 Identities = 32/35 (91%) Strand = Plus / Plus Query: 58 ggagcagcggtcgccgccggtgagccagaggagga 92 ||||||||||| ||||||| ||| ||||||||||| Sbjct: 13480451 ggagcagcggttgccgccgttgatccagaggagga 13480485
>gb|AC128642.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OJ1115_A03 map S20262S, complete sequence Length = 149553 Score = 69.9 bits (35), Expect = 5e-09 Identities = 35/35 (100%) Strand = Plus / Plus Query: 58 ggagcagcggtcgccgccggtgagccagaggagga 92 ||||||||||||||||||||||||||||||||||| Sbjct: 6183 ggagcagcggtcgccgccggtgagccagaggagga 6217 Score = 61.9 bits (31), Expect = 1e-06 Identities = 34/35 (97%) Strand = Plus / Plus Query: 58 ggagcagcggtcgccgccggtgagccagaggagga 92 ||||||||||||||||||||||| ||||||||||| Sbjct: 52555 ggagcagcggtcgccgccggtgatccagaggagga 52589 Score = 46.1 bits (23), Expect = 0.075 Identities = 32/35 (91%) Strand = Plus / Plus Query: 58 ggagcagcggtcgccgccggtgagccagaggagga 92 ||||||||||| ||||||| ||| ||||||||||| Sbjct: 116625 ggagcagcggttgccgccgttgatccagaggagga 116659
>dbj|AK111439.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-183-A05, full insert sequence Length = 1523 Score = 61.9 bits (31), Expect = 1e-06 Identities = 34/35 (97%) Strand = Plus / Minus Query: 58 ggagcagcggtcgccgccggtgagccagaggagga 92 ||||||||||||||||||||||| ||||||||||| Sbjct: 306 ggagcagcggtcgccgccggtgatccagaggagga 272
>gb|AC113249.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0041L19, complete sequence Length = 155086 Score = 56.0 bits (28), Expect = 8e-05 Identities = 55/64 (85%) Strand = Plus / Minus Query: 29 ccgatctcgtaggcgaggccgctgaaggaggagcagcggtcgccgccggtgagccagagg 88 |||| ||||||| |||||||| ||||| |||||||| | |||||||||||||||||| Sbjct: 131143 ccgacctcgtagacgaggccggagaaggcggagcagccggggccgccggtgagccagagc 131084 Query: 89 agga 92 |||| Sbjct: 131083 agga 131080 Score = 46.1 bits (23), Expect = 0.075 Identities = 23/23 (100%) Strand = Plus / Minus Query: 152 tggtccacctccacgtacccggt 174 ||||||||||||||||||||||| Sbjct: 131008 tggtccacctccacgtacccggt 130986
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 56.0 bits (28), Expect = 8e-05 Identities = 31/32 (96%) Strand = Plus / Plus Query: 61 gcagcggtcgccgccggtgagccagaggagga 92 ||||||| |||||||||||||||||||||||| Sbjct: 24148024 gcagcgggcgccgccggtgagccagaggagga 24148055
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 56.0 bits (28), Expect = 8e-05 Identities = 31/32 (96%) Strand = Plus / Plus Query: 61 gcagcggtcgccgccggtgagccagaggagga 92 ||||||| |||||||||||||||||||||||| Sbjct: 24076230 gcagcgggcgccgccggtgagccagaggagga 24076261
>emb|AL772426.5|CNS08CA4 Oryza sativa chromosome 12, . BAC OJ1310_C03 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132733 Score = 56.0 bits (28), Expect = 8e-05 Identities = 31/32 (96%) Strand = Plus / Plus Query: 61 gcagcggtcgccgccggtgagccagaggagga 92 ||||||| |||||||||||||||||||||||| Sbjct: 32715 gcagcgggcgccgccggtgagccagaggagga 32746
>ref|NM_194480.1| Oryza sativa (japonica cultivar-group) putative serine carboxypeptidase (OSJNBa0046L02.10), mRNA Length = 393 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Minus Query: 115 ctccgactggacgaagtagtagaagagctc 144 ||||||||||| |||||||||||||||||| Sbjct: 216 ctccgactggatgaagtagtagaagagctc 187
>gb|AC079632.4| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0046L02, complete sequence Length = 142381 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Plus Query: 115 ctccgactggacgaagtagtagaagagctc 144 ||||||||||| |||||||||||||||||| Sbjct: 81123 ctccgactggatgaagtagtagaagagctc 81152 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 153 ggtccacctccacgtacccggt 174 |||||||||||||||||||||| Sbjct: 68045 ggtccacctccacgtacccggt 68066
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Plus Query: 115 ctccgactggacgaagtagtagaagagctc 144 ||||||||||| |||||||||||||||||| Sbjct: 95229 ctccgactggatgaagtagtagaagagctc 95258 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 153 ggtccacctccacgtacccggt 174 |||||||||||||||||||||| Sbjct: 82151 ggtccacctccacgtacccggt 82172
>gb|AC166065.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OJA1136E01, complete sequence Length = 105139 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Plus Query: 115 ctccgactggacgaagtagtagaagagctc 144 ||||||||||| |||||||||||||||||| Sbjct: 100368 ctccgactggatgaagtagtagaagagctc 100397 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 153 ggtccacctccacgtacccggt 174 |||||||||||||||||||||| Sbjct: 87290 ggtccacctccacgtacccggt 87311
>gb|AC108883.1| Genomic sequence for (japonica cultivar-group) cultivar Nipponbare clone OJ1136E01, from chromosome 10, complete sequence Length = 113856 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Minus Query: 115 ctccgactggacgaagtagtagaagagctc 144 ||||||||||| |||||||||||||||||| Sbjct: 18628 ctccgactggatgaagtagtagaagagctc 18599 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Minus Query: 153 ggtccacctccacgtacccggt 174 |||||||||||||||||||||| Sbjct: 31706 ggtccacctccacgtacccggt 31685
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Plus Query: 115 ctccgactggacgaagtagtagaagagctc 144 ||||||||||| |||||||||||||||||| Sbjct: 95229 ctccgactggatgaagtagtagaagagctc 95258 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 153 ggtccacctccacgtacccggt 174 |||||||||||||||||||||| Sbjct: 82151 ggtccacctccacgtacccggt 82172
>dbj|AK104807.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-E08, full insert sequence Length = 1605 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Minus Query: 115 ctccgactggacgaagtagtagaagagctc 144 ||||||||||| |||||||||||||||||| Sbjct: 254 ctccgactggatgaagtagtagaagagctc 225
>dbj|AK072954.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023149K09, full insert sequence Length = 1655 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Minus Query: 115 ctccgactggacgaagtagtagaagagctc 144 ||||||||||| |||||||||||||||||| Sbjct: 257 ctccgactggatgaagtagtagaagagctc 228
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Plus Query: 115 ctccgactggacgaagtagtagaagagctc 144 ||||||||||| |||||||||||||||||| Sbjct: 95227 ctccgactggatgaagtagtagaagagctc 95256 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 153 ggtccacctccacgtacccggt 174 |||||||||||||||||||||| Sbjct: 82149 ggtccacctccacgtacccggt 82170
>ref|XM_467209.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1672 Score = 50.1 bits (25), Expect = 0.005 Identities = 31/33 (93%) Strand = Plus / Minus Query: 115 ctccgactggacgaagtagtagaagagctccgt 147 |||||||| ||||||||||||||||||||||| Sbjct: 289 ctccgactccacgaagtagtagaagagctccgt 257
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 50.1 bits (25), Expect = 0.005 Identities = 31/33 (93%) Strand = Plus / Minus Query: 115 ctccgactggacgaagtagtagaagagctccgt 147 |||||||| ||||||||||||||||||||||| Sbjct: 28231058 ctccgactccacgaagtagtagaagagctccgt 28231026 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 174 tgtggaggcggaaggggaggcggccgtcg 202 |||||||| |||||| ||||||||||||| Sbjct: 20863636 tgtggaggaggaaggcgaggcggccgtcg 20863664
>dbj|AP004096.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1743_B12 Length = 175645 Score = 50.1 bits (25), Expect = 0.005 Identities = 31/33 (93%) Strand = Plus / Minus Query: 115 ctccgactggacgaagtagtagaagagctccgt 147 |||||||| ||||||||||||||||||||||| Sbjct: 22815 ctccgactccacgaagtagtagaagagctccgt 22783
>dbj|AK064814.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000E09, full insert sequence Length = 1673 Score = 50.1 bits (25), Expect = 0.005 Identities = 31/33 (93%) Strand = Plus / Minus Query: 115 ctccgactggacgaagtagtagaagagctccgt 147 |||||||| ||||||||||||||||||||||| Sbjct: 289 ctccgactccacgaagtagtagaagagctccgt 257
>ref|XM_469617.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1669 Score = 46.1 bits (23), Expect = 0.075 Identities = 26/27 (96%) Strand = Plus / Minus Query: 125 acgaagtagtagaagagctccgtgccc 151 |||||||||||||||||||| |||||| Sbjct: 235 acgaagtagtagaagagctcagtgccc 209
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 46.1 bits (23), Expect = 0.075 Identities = 26/27 (96%) Strand = Plus / Minus Query: 125 acgaagtagtagaagagctccgtgccc 151 |||||||||||||||||||| |||||| Sbjct: 29568159 acgaagtagtagaagagctcagtgccc 29568133 Score = 44.1 bits (22), Expect = 0.30 Identities = 25/26 (96%) Strand = Plus / Minus Query: 125 acgaagtagtagaagagctccgtgcc 150 |||||||||||||||||||| ||||| Sbjct: 29579484 acgaagtagtagaagagctcagtgcc 29579459
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 46.1 bits (23), Expect = 0.075 Identities = 26/27 (96%) Strand = Plus / Minus Query: 125 acgaagtagtagaagagctccgtgccc 151 |||||||||||||||||||| |||||| Sbjct: 29659581 acgaagtagtagaagagctcagtgccc 29659555 Score = 44.1 bits (22), Expect = 0.30 Identities = 25/26 (96%) Strand = Plus / Minus Query: 125 acgaagtagtagaagagctccgtgcc 150 |||||||||||||||||||| ||||| Sbjct: 29670906 acgaagtagtagaagagctcagtgcc 29670881
>gb|AC120983.6| Oryza sativa chromosome 3 BAC OSJNBb0011H13 genomic sequence, complete sequence Length = 132782 Score = 46.1 bits (23), Expect = 0.075 Identities = 26/27 (96%) Strand = Plus / Minus Query: 125 acgaagtagtagaagagctccgtgccc 151 |||||||||||||||||||| |||||| Sbjct: 90789 acgaagtagtagaagagctcagtgccc 90763 Score = 44.1 bits (22), Expect = 0.30 Identities = 25/26 (96%) Strand = Plus / Minus Query: 125 acgaagtagtagaagagctccgtgcc 150 |||||||||||||||||||| ||||| Sbjct: 102114 acgaagtagtagaagagctcagtgcc 102089
>dbj|AK104942.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-107-A07, full insert sequence Length = 510 Score = 46.1 bits (23), Expect = 0.075 Identities = 26/27 (96%) Strand = Plus / Minus Query: 125 acgaagtagtagaagagctccgtgccc 151 |||||||||||||||||||| |||||| Sbjct: 311 acgaagtagtagaagagctcagtgccc 285
>dbj|AK069378.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012E22, full insert sequence Length = 1734 Score = 46.1 bits (23), Expect = 0.075 Identities = 32/35 (91%) Strand = Plus / Minus Query: 58 ggagcagcggtcgccgccggtgagccagaggagga 92 ||||||||||| ||||||| ||| ||||||||||| Sbjct: 349 ggagcagcggttgccgccgttgatccagaggagga 315
>dbj|AK067912.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013128F10, full insert sequence Length = 1677 Score = 46.1 bits (23), Expect = 0.075 Identities = 26/27 (96%) Strand = Plus / Minus Query: 125 acgaagtagtagaagagctccgtgccc 151 |||||||||||||||||||| |||||| Sbjct: 346 acgaagtagtagaagagctcagtgccc 320
>ref|NM_194477.1| Oryza sativa (japonica cultivar-group) putative serine carboxypeptidase (OSJNBa0046L02.7), mRNA Length = 1299 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Minus Query: 153 ggtccacctccacgtacccggt 174 |||||||||||||||||||||| Sbjct: 199 ggtccacctccacgtacccggt 178
>ref|XM_469620.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1292 Score = 44.1 bits (22), Expect = 0.30 Identities = 25/26 (96%) Strand = Plus / Minus Query: 125 acgaagtagtagaagagctccgtgcc 150 |||||||||||||||||||| ||||| Sbjct: 350 acgaagtagtagaagagctcagtgcc 325
>gb|AY663392.1| Triticum aestivum cultivar Renan clone BAC 930H14, complete sequence Length = 153766 Score = 44.1 bits (22), Expect = 0.30 Identities = 25/26 (96%) Strand = Plus / Minus Query: 115 ctccgactggacgaagtagtagaaga 140 ||||||||||| |||||||||||||| Sbjct: 138301 ctccgactggatgaagtagtagaaga 138276
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.30 Identities = 25/26 (96%) Strand = Plus / Minus Query: 125 acgaagtagtagaagagctccgtgcc 150 |||||||||||||||||||| ||||| Sbjct: 18691950 acgaagtagtagaagagctcagtgcc 18691925
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Minus Query: 177 ggaggcggaaggggaggcggcc 198 |||||||||||||||||||||| Sbjct: 1493957 ggaggcggaaggggaggcggcc 1493936 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 aggaaagggtccccctcgcc 108 |||||||||||||||||||| Sbjct: 1042683 aggaaagggtccccctcgcc 1042702
>dbj|AP005492.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0077L03 Length = 171177 Score = 44.1 bits (22), Expect = 0.30 Identities = 25/26 (96%) Strand = Plus / Minus Query: 125 acgaagtagtagaagagctccgtgcc 150 |||||||||||||||||||| ||||| Sbjct: 17701 acgaagtagtagaagagctcagtgcc 17676
>dbj|AP005468.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0020P04 Length = 153894 Score = 44.1 bits (22), Expect = 0.30 Identities = 25/26 (96%) Strand = Plus / Minus Query: 125 acgaagtagtagaagagctccgtgcc 150 |||||||||||||||||||| ||||| Sbjct: 144053 acgaagtagtagaagagctcagtgcc 144028
>dbj|AK106667.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-113-H08, full insert sequence Length = 1837 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Minus Query: 153 ggtccacctccacgtacccggt 174 |||||||||||||||||||||| Sbjct: 255 ggtccacctccacgtacccggt 234
>dbj|AK066640.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073A13, full insert sequence Length = 2970 Score = 44.1 bits (22), Expect = 0.30 Identities = 25/26 (96%) Strand = Plus / Minus Query: 125 acgaagtagtagaagagctccgtgcc 150 |||||||||||||||||||| ||||| Sbjct: 285 acgaagtagtagaagagctcagtgcc 260
>dbj|AK066477.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013070H07, full insert sequence Length = 1931 Score = 44.1 bits (22), Expect = 0.30 Identities = 25/26 (96%) Strand = Plus / Minus Query: 125 acgaagtagtagaagagctccgtgcc 150 |||||||||||||||||||| ||||| Sbjct: 368 acgaagtagtagaagagctcagtgcc 343
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Minus Query: 177 ggaggcggaaggggaggcggcc 198 |||||||||||||||||||||| Sbjct: 1168652 ggaggcggaaggggaggcggcc 1168631 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 aggaaagggtccccctcgcc 108 |||||||||||||||||||| Sbjct: 715660 aggaaagggtccccctcgcc 715679
>ref|XM_466174.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1200 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 174 tgtggaggcggaaggggaggcggccgtcg 202 |||||||| |||||| ||||||||||||| Sbjct: 382 tgtggaggaggaaggcgaggcggccgtcg 354
>gb|BT016581.1| Zea mays clone Contig414 mRNA sequence Length = 1736 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 154 gtccacctccacgtacccggt 174 ||||||||||||||||||||| Sbjct: 180 gtccacctccacgtacccggt 160
>gb|AC129772.3| Mus musculus BAC clone RP24-491D10 from chromosome 10, complete sequence Length = 160317 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 263 gacagcaagtagcagcagcag 283 ||||||||||||||||||||| Sbjct: 156654 gacagcaagtagcagcagcag 156674
>gb|AC145476.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1023E01, complete sequence Length = 140322 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 177 ggaggcggaaggggaggcggc 197 ||||||||||||||||||||| Sbjct: 25393 ggaggcggaaggggaggcggc 25413
>gb|DQ422949.1| Bos taurus BTA02 scaffold1676_5172 genomic sequence contig containing highly polymorphic single nucleotide sites Length = 13240 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 270 agtagcagcagcagagcagcc 290 ||||||||||||||||||||| Sbjct: 10769 agtagcagcagcagagcagcc 10749
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 177 ggaggcggaaggggaggcggc 197 ||||||||||||||||||||| Sbjct: 13569485 ggaggcggaaggggaggcggc 13569505 Score = 40.1 bits (20), Expect = 4.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 52 gaaggaggagcagcggtcgccgccggtg 79 ||||| |||||||||| ||||||||||| Sbjct: 4678361 gaaggcggagcagcgggcgccgccggtg 4678388
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 177 ggaggcggaaggggaggcggc 197 ||||||||||||||||||||| Sbjct: 35450131 ggaggcggaaggggaggcggc 35450111
>dbj|AP003734.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1088C09 Length = 154084 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 177 ggaggcggaaggggaggcggc 197 ||||||||||||||||||||| Sbjct: 74080 ggaggcggaaggggaggcggc 74060
>dbj|AP004038.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1004_H01 Length = 121377 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 174 tgtggaggcggaaggggaggcggccgtcg 202 |||||||| |||||| ||||||||||||| Sbjct: 106097 tgtggaggaggaaggcgaggcggccgtcg 106125
>dbj|AK101238.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033031L12, full insert sequence Length = 2382 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 177 ggaggcggaaggggaggcggc 197 ||||||||||||||||||||| Sbjct: 206 ggaggcggaaggggaggcggc 226
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 242 cgcggggcgacggcgatgagc 262 ||||||||||||||||||||| Sbjct: 1176481 cgcggggcgacggcgatgagc 1176501
>gb|AC152983.2| Mus musculus 10 BAC RP23-17L11 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 224120 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 263 gacagcaagtagcagcagcag 283 ||||||||||||||||||||| Sbjct: 45308 gacagcaagtagcagcagcag 45328
>ref|XM_476061.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1320 Score = 40.1 bits (20), Expect = 4.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 52 gaaggaggagcagcggtcgccgccggtg 79 ||||| |||||||||| ||||||||||| Sbjct: 789 gaaggcggagcagcgggcgccgccggtg 762
>ref|XM_472333.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1413 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 cgaagtagtagaagagctcc 145 |||||||||||||||||||| Sbjct: 208 cgaagtagtagaagagctcc 189
>ref|XM_869541.1| PREDICTED: Bos taurus similar to Folate transporter 1 (Solute carrier family 19 member 1) (Placental folate transporter) (FOLT) (Reduced folate carrier protein) (RFC) (Intestinal folate carrier) (IFC-1) (LOC617307), partial mRNA Length = 1339 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 aagagctccgtgccctggtc 156 |||||||||||||||||||| Sbjct: 1224 aagagctccgtgccctggtc 1243
>gb|AC120408.7| Mus musculus chromosome 5, clone RP24-433N14, complete sequence Length = 178077 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 140 agctccgtgccctggtccacctcc 163 |||||| ||||||||||||||||| Sbjct: 113867 agctccatgccctggtccacctcc 113844
>ref|XM_544726.2| PREDICTED: Canis familiaris similar to Kelch domain containing protein 5 (LOC487601), mRNA Length = 2031 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 gaggcggccgtcgaagccgg 209 |||||||||||||||||||| Sbjct: 1479 gaggcggccgtcgaagccgg 1460
>gb|AC157761.6| Mus musculus chromosome 5, clone RP23-446J15, complete sequence Length = 177868 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 140 agctccgtgccctggtccacctcc 163 |||||| ||||||||||||||||| Sbjct: 10606 agctccatgccctggtccacctcc 10629
>emb|AL590226.23| Human DNA sequence from clone RP11-251M1 on chromosome 9 Contains a novel gene, the gene for NEU1 protein (ZNEU1), the AGPAT2 gene for 1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta), the 5' end of the gene for a novel protein similar to mouse pancreatitis-induced protein 49 (PIP49), the 3' end of a novel gene (FLJ30346) and seven CpG islands, complete sequence Length = 149567 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 ggggaggctggtcaccagct 227 |||||||||||||||||||| Sbjct: 95956 ggggaggctggtcaccagct 95937
>emb|BX883051.1| Rattus norvegicus chromosome 20, major histocompatibility complex, assembled from 40 BACs, strain Brown Norway (BN/ssNHsd), RT1n haplotype; segment 10/11 Length = 348946 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 ccagaggaggaaagggtccc 101 |||||||||||||||||||| Sbjct: 81026 ccagaggaggaaagggtccc 81045
>gb|AC154110.3| Ornithorhynchus anatinus BAC clone OABb-462P24 from chromosome unknown, complete sequence Length = 169179 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 cgaagtagtagaagagctcc 145 |||||||||||||||||||| Sbjct: 7017 cgaagtagtagaagagctcc 7036
>emb|AJ426040.1|TRU426040 Takifugu rubripes vader gene, cetn gene, fgf2 gene, gfg gene and spaf gene, cosmid 196n09 Length = 29053 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 270 agtagcagcagcagagcagc 289 |||||||||||||||||||| Sbjct: 10170 agtagcagcagcagagcagc 10151
>gb|AC130610.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0478F09, complete sequence Length = 145070 Score = 40.1 bits (20), Expect = 4.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 52 gaaggaggagcagcggtcgccgccggtg 79 ||||| |||||||||| ||||||||||| Sbjct: 46366 gaaggcggagcagcgggcgccgccggtg 46393
>emb|AJ628861.1| Sphingomonas herbicidovorans cadR gene (partial), ORF2 and tfdB gene Length = 4522 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 agcagcagcagagcagccgc 292 |||||||||||||||||||| Sbjct: 1483 agcagcagcagagcagccgc 1464
>gb|AF519546.1| Danio rerio coagulation factor VII, coagulation factor VIIi, and coagulation factor X genes, complete cds Length = 20947 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 141 gctccgtgccctggtccacctcca 164 |||||||||||| ||||||||||| Sbjct: 4984 gctccgtgccctcgtccacctcca 4961
>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome Length = 3046682 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 gaggctggtcaccagcttgg 230 |||||||||||||||||||| Sbjct: 2109228 gaggctggtcaccagcttgg 2109247
>ref|XM_940495.1| PREDICTED: Homo sapiens similar to Kelch domain containing protein 5 (LOC651356), mRNA Length = 1377 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 gaggcggccgtcgaagccgg 209 |||||||||||||||||||| Sbjct: 780 gaggcggccgtcgaagccgg 761
>ref|XM_372573.1| PREDICTED: Homo sapiens similar to Kelch domain containing protein 5 (LOC390594), mRNA Length = 1377 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 gaggcggccgtcgaagccgg 209 |||||||||||||||||||| Sbjct: 780 gaggcggccgtcgaagccgg 761
>gb|AC013553.14| Homo sapiens chromosome 15, clone RP11-325L12, complete sequence Length = 184864 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 gaggcggccgtcgaagccgg 209 |||||||||||||||||||| Sbjct: 86730 gaggcggccgtcgaagccgg 86711
>ref|NM_131819.2| Danio rerio coagulation factor VII (f7), mRNA Length = 1828 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 141 gctccgtgccctggtccacctcca 164 |||||||||||| ||||||||||| Sbjct: 803 gctccgtgccctcgtccacctcca 780
>gb|AC157517.2| Mus musculus BAC clone RP24-69C11 from chromosome 9, complete sequence Length = 189253 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 ggttgaatggaaagagagac 29 |||||||||||||||||||| Sbjct: 44275 ggttgaatggaaagagagac 44256
>gb|AY040345.1| Danio rerio coagulation factor VII mRNA, complete cds Length = 1671 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 141 gctccgtgccctggtccacctcca 164 |||||||||||| ||||||||||| Sbjct: 787 gctccgtgccctcgtccacctcca 764
>gb|AC149395.2| Phakopsora pachyrhizi clone JGIAFNA-61H11, complete sequence Length = 30962 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 274 gcagcagcagagcagccgcg 293 |||||||||||||||||||| Sbjct: 22166 gcagcagcagagcagccgcg 22185
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 cgaagtagtagaagagctcc 145 |||||||||||||||||||| Sbjct: 19600717 cgaagtagtagaagagctcc 19600698
>gb|BC095023.1| Danio rerio coagulation factor VII, mRNA (cDNA clone MGC:109870 IMAGE:7292904), complete cds Length = 1828 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 141 gctccgtgccctggtccacctcca 164 |||||||||||| ||||||||||| Sbjct: 803 gctccgtgccctcgtccacctcca 780
>emb|AL662997.3|OSJN00205 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0039F02, complete sequence Length = 122499 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 cgaagtagtagaagagctcc 145 |||||||||||||||||||| Sbjct: 121362 cgaagtagtagaagagctcc 121343
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 gcggtcgccgccggtgagcc 83 |||||||||||||||||||| Sbjct: 632597 gcggtcgccgccggtgagcc 632616
>dbj|AK100028.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013147B02, full insert sequence Length = 1897 Score = 40.1 bits (20), Expect = 4.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 52 gaaggaggagcagcggtcgccgccggtg 79 ||||| |||||||||| ||||||||||| Sbjct: 876 gaaggcggagcagcgggcgccgccggtg 849
>dbj|AK070195.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023043E04, full insert sequence Length = 1761 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 cgaagtagtagaagagctcc 145 |||||||||||||||||||| Sbjct: 264 cgaagtagtagaagagctcc 245
>gb|AY763504.1| Lytechinus variegatus co-repressor protein groucho (groucho) mRNA, complete cds Length = 2241 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 acagcaagtagcagcagcag 283 |||||||||||||||||||| Sbjct: 300 acagcaagtagcagcagcag 319
>gb|AC105298.21| Mus musculus strain C57BL/6J chromosome 5 clone rp23-224j9, complete sequence Length = 258789 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 140 agctccgtgccctggtccacctcc 163 |||||| ||||||||||||||||| Sbjct: 196363 agctccatgccctggtccacctcc 196386
>gb|AC161465.3| Gallus gallus BAC clone CH261-97D4 from chromosome ul, complete sequence Length = 213337 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 acagcaagtagcagcagcag 283 |||||||||||||||||||| Sbjct: 7213 acagcaagtagcagcagcag 7232
>emb|AL731591.3|OSJN00240 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039C07, complete sequence Length = 166410 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 cgaagtagtagaagagctcc 145 |||||||||||||||||||| Sbjct: 51443 cgaagtagtagaagagctcc 51424 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,150,444 Number of Sequences: 3902068 Number of extensions: 3150444 Number of successful extensions: 73355 Number of sequences better than 10.0: 84 Number of HSP's better than 10.0 without gapping: 88 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72076 Number of HSP's gapped (non-prelim): 1279 length of query: 350 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 328 effective length of database: 17,147,199,772 effective search space: 5624281525216 effective search space used: 5624281525216 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
