>AAT_PYRHO (O58489) Aspartate aminotransferase (EC 2.6.1.1) (Transaminase A)|
           (AspAT)
          Length = 391

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
 Frame = -1

Query: 360 AMQEVVGFYKENTKIIVDTFTSL-GFNVYGAKNAPYVWVHFPGRN-SWDVFAE-ILEKAH 190
           A++E+   Y E  KI+V    ++ G  V   K A YV+ +  G   S + F+E +LEKA 
Sbjct: 289 AVEEMKKEYNERRKIVVKRLKNMPGIKVKEPKGAFYVFPNISGTGMSSEKFSEWLLEKAR 348

Query: 189 VVTTXXXXXXXXXXXFVRVSAFGHRENIIEAARRLKQ 79
           VV             +VR+S    +E +IEA  R+++
Sbjct: 349 VVVIPGTAFGRMGEGYVRISYATSKEKLIEAMNRIEK 385

>AAT2_BACSU (P39643) Probable aspartate aminotransferase (EC 2.6.1.1)|
           (Transaminase A) (ASPAT)
          Length = 399

 Score = 35.8 bits (81), Expect = 0.026
 Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 7/94 (7%)
 Frame = -1

Query: 336 YKENTKIIVDTFTSL-----GFNVYGAKNAPYVWVHFPG--RNSWDVFAEILEKAHVVTT 178
           YKE     +D FT+L     G+ +   K   YVW   P     S      +LE AHVV T
Sbjct: 298 YKER----IDFFTALCEKELGWKMEKPKGTFYVWAEIPNTFETSHQFSDYLLEHAHVVVT 353

Query: 177 XXXXXXXXXXXFVRVSAFGHRENIIEAARRLKQL 76
                       VR+S    +E++ E   R+++L
Sbjct: 354 PGEIFGSNGKRHVRISMVSKQEDLREFVTRIQKL 387

>AATC_RHIME (O87320) Putative aminotransferase aatC (EC 2.6.1.-)|
          Length = 405

 Score = 33.9 bits (76), Expect = 0.10
 Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 4/95 (4%)
 Frame = -1

Query: 351 EVVGFYKENTKIIVDTFTSLGFNVYGAKNAPYVWVHFPGR----NSWDVFAEILEKAHVV 184
           EV   YK    ++V++F   GF V       + W   P +     S +    ++EKA V 
Sbjct: 292 EVRAIYKRRRDVMVESFGKAGFEVPPPPATMFAWAKIPEKFRHLGSLEFSKLLVEKADVA 351

Query: 183 TTXXXXXXXXXXXFVRVSAFGHRENIIEAARRLKQ 79
                        +VR++   +   I +AAR +K+
Sbjct: 352 VAPGIGFGEQGDDYVRLALVENEHRIRQAARNIKR 386

>YFDZ_ECOLI (P77434) Hypothetical aminotransferase yfdZ (EC 2.6.1.-)|
          Length = 412

 Score = 32.0 bits (71), Expect = 0.38
 Identities = 21/100 (21%), Positives = 42/100 (42%), Gaps = 4/100 (4%)
 Frame = -1

Query: 357 MQEVVGFYKENTKIIVDTFTSLGFNVYGAKNAPYVWVHFP----GRNSWDVFAEILEKAH 190
           ++++   YK    ++V      G+ V   K + YVW   P       S +   ++L +A 
Sbjct: 296 VRDIAEQYKRRRDVLVKGLHEAGWMVEMPKASMYVWAKIPEPYAAMGSLEFAKKLLNEAK 355

Query: 189 VVTTXXXXXXXXXXXFVRVSAFGHRENIIEAARRLKQLYK 70
           V  +            VR +   +R+ I +A R +K +++
Sbjct: 356 VCVSPGIGFGDYGDTHVRFALIENRDRIRQAIRGIKAMFR 395

>ZNF70_HUMAN (Q9UC06) Zinc finger protein 70 (Zinc finger protein N27C7-1)|
          Length = 446

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
 Frame = +3

Query: 48  PSAKPTLTCIAASVFLQLQ*CSLCGQMH*PSQSPHRQAQTHCQE**PHAPSQGSQQRHPK 227
           P  +P    +    FLQ    S+C  +H    SP   A+T   +  P+AP +  Q   P 
Sbjct: 81  PGTRPQDDELFGQTFLQKSDLSMCQIIHSEEPSPCDCAETDRGDSGPNAPHRTPQPAKPY 140

Query: 228 NCGQ-GSAPTHRGHSWHH 278
            C + G A +   H   H
Sbjct: 141 ACRECGKAFSQSSHLLRH 158

>MTNE_BACSU (O31665) Transaminase mtnE (EC 2.6.1.-)|
          Length = 398

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
 Frame = -1

Query: 336 YKENTKIIVDTFTSLGFNVYGAKNAPYVWVHFPGRNSWDVFAEIL-EKAHVVTTXXXXXX 160
           Y+      +     +G++V     + + W+  P   + + F+++L EKA+V         
Sbjct: 299 YESRRNAWITACREIGWDVTAPAGSFFAWLPVPEGYTSEQFSDLLLEKANVAVAAGNGFG 358

Query: 159 XXXXXFVRVSAFGHRENIIEAARRLKQL 76
                +VRV      E + EAA R+ +L
Sbjct: 359 EYGEGYVRVGLLTSEERLKEAAYRIGKL 386

>SODF_AQUPY (Q9X6W9) Superoxide dismutase [Fe] (EC 1.15.1.1)|
          Length = 212

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -1

Query: 318 IIVDTFTSLGFNVYGAKNAPYVWVHFPGRNSWDVFAEILEKA 193
           I++DT+    +  Y  K  PY+   F   N WDV  E  EKA
Sbjct: 160 IVIDTYEHAYYVDYKNKRPPYIDAFFKNIN-WDVVNERFEKA 200

>SODF_AQUAE (O67470) Superoxide dismutase [Fe] (EC 1.15.1.1)|
          Length = 212

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -1

Query: 318 IIVDTFTSLGFNVYGAKNAPYVWVHFPGRNSWDVFAEILEKA 193
           I++DT+    +  Y  K  PY+   F   N WDV  E  EKA
Sbjct: 160 IVIDTYEHAYYVDYKNKRPPYIDAFFKNIN-WDVVNERFEKA 200

>PDXA2_RHIME (Q92X16) 4-hydroxythreonine-4-phosphate dehydrogenase 2 (EC|
           1.1.1.262) (4-(phosphohydroxy)-L-threonine dehydrogenase
           2)
          Length = 321

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +1

Query: 142 KALTARPKPTARSSNHMRLLKDLSKDIPRIAAREVHPHIG--GILGTID 282
           +A T R   T R+ N    LK +  + PRIA   ++PH G  G+ GT D
Sbjct: 162 RATTERVLATIRAGNAH--LKRIGYEHPRIAVAGINPHCGENGLFGTED 208

>CIC_DROME (Q9U1H0) Putative transcription factor capicua (Protein fettucine)|
          Length = 1403

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +3

Query: 138 SQSPHRQAQTHCQE**PHAPSQGSQQRHP 224
           SQ  H+Q Q H Q+  PH    G Q  HP
Sbjct: 210 SQQQHQQQQQHQQQAHPHVVVSGGQTFHP 238

>CEF1_DEBHA (Q6BLT3) Pre-mRNA-splicing factor CEF1|
          Length = 668

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 14/58 (24%), Positives = 28/58 (48%)
 Frame = -1

Query: 246 HFPGRNSWDVFAEILEKAHVVTTXXXXXXXXXXXFVRVSAFGHRENIIEAARRLKQLY 73
           H P   ++++  +I+ K H +++            + +SAF +REN   A + +  LY
Sbjct: 560 HLP--KTYEMAEQIISKLHELSSESSSIENSISANINISAFNYREN--NALQNIDNLY 613

>VE1_HPV20 (P50758) Replication protein E1 (EC 3.6.1.-) (ATP-dependent|
           helicase E1)
          Length = 605

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +1

Query: 202 KDLSKDIPRIAAREVHPHIGGILGTIDVESKRRKRVNDDFSILLVE 339
           +D+S ++  + A +  P   G LGT+D+      R ++  +ILL +
Sbjct: 124 EDVSSEVEEVPALDSQPVAEGHLGTVDIHYTELLRASNHKAILLAK 169

>LEU2_PHYBL (P18250) 3-isopropylmalate dehydratase (EC 4.2.1.33)|
           (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI)
          Length = 744

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 323 LKSSLTRLRRLDSTSMVPRMPP 258
           ++  LT +R+  ST MVPR PP
Sbjct: 449 IRGYLTDVRKFSSTPMVPRSPP 470

>CEBP_DROVI (Q02638) CCAAT/enhancer-binding protein (C/EBP) (Slow border cell|
           protein)
          Length = 451

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +3

Query: 147 PHRQAQTHCQE**PHAPSQGSQQRHPKNCGQGSAPTHRGHSWHH 278
           PH  A T  Q    H+  Q +QQ+H +   Q +   HR HS  H
Sbjct: 317 PHLTANTAQQLLKHHSKLQQTQQQHAQQQQQHAQQQHRKHSNKH 360

>PATA_BACSU (P16524) Putative aminotransferase A (EC 2.6.1.-)|
          Length = 392

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
 Frame = -1

Query: 336 YKENTKIIVDTFTSLGFNVYGAKNAPYVW--VHFPGRNSWDVFAEILEKAHVVTTXXXXX 163
           YK+    + D   S+G +V     A Y++  +   G  S+D    +LE A V        
Sbjct: 289 YKKRLDYVYDRLVSMGLDVVKPSGAFYIFPSIKSFGMTSFDFSMALLEDAGVALVPGSSF 348

Query: 162 XXXXXXFVRVSAFGHRENIIEAARRLK 82
                 +VR+S     + + E   RL+
Sbjct: 349 STYGEGYVRLSFACSMDTLREGLDRLE 375

>PBPA_XYLFT (Q87AW7) Penicillin-binding protein 1A (PBP-1a) (PBP1a) [Includes:|
           Penicillin-insensitive transglycosylase (EC 2.4.2.-)
           (Peptidoglycan TGase); Penicillin-sensitive
           transpeptidase (EC 3.4.-.-) (DD-transpeptidase)]
          Length = 809

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 309 DTFTSLGFNVYGAKNAPYVWVHF 241
           D F SLG+  YG K A  +W+ +
Sbjct: 728 DDFQSLGYREYGGKAALPIWIEY 750

>PBPA_XYLFA (Q9PGD4) Penicillin-binding protein 1A (PBP-1a) (PBP1a) [Includes:|
           Penicillin-insensitive transglycosylase (EC 2.4.2.-)
           (Peptidoglycan TGase); Penicillin-sensitive
           transpeptidase (EC 3.4.-.-) (DD-transpeptidase)]
          Length = 809

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 309 DTFTSLGFNVYGAKNAPYVWVHF 241
           D F SLG+  YG K A  +W+ +
Sbjct: 728 DDFQSLGYREYGGKAALPIWIEY 750

>YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B)|
          Length = 1770

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +1

Query: 205  DLSKDIPRIAAREVHPHIGGI-LGTIDVESKRRKRVNDD 318
            D+SKDIP I +R+ +  +GG+    +   +K +KR  +D
Sbjct: 1161 DVSKDIPHIHSRQTNSSLGGMDDSNVLTTTKSKKRSLED 1199

>PRM2_MOUSE (P07978) Protamine-2 (Protamine-P2) (Sperm histone P2) [Contains:|
           PP2-A; PP2-C; PP2-D; PP2-B (Protamine MP2)]
          Length = 107

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 9/63 (14%)
 Frame = +3

Query: 123 QMH*PSQSPHRQAQTHCQE**PHAPSQGSQQRHPKNCGQGSAP--------THRGHSWH- 275
           +M  PS+ PH+             P Q   +R  +  GQG +P        THRGH  H 
Sbjct: 5   RMRSPSEGPHQ------------GPGQ-DHEREEQGQGQGLSPERVEDYGRTHRGHHHHR 51

Query: 276 HRR 284
           HRR
Sbjct: 52  HRR 54


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,532,045
Number of Sequences: 219361
Number of extensions: 887074
Number of successful extensions: 2498
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 2445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2495
length of database: 80,573,946
effective HSP length: 95
effective length of database: 59,734,651
effective search space used: 1433631624
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)