ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal4k11 |
|---|---|
| Clone Library Name | barley_pub |
>TPPC1_MOUSE (Q5NCF2) Trafficking protein particle complex subunit 1| Length = 145 Score = 99.0 bits (245), Expect = 1e-20 Identities = 52/122 (42%), Positives = 76/122 (62%), Gaps = 1/122 (0%) Frame = -2 Query: 695 LARNQDQKLMFGLLFSLRSFTAKIDPTSTEHANLGAPLLPGQGCSFHSFKTNTYKLNYME 516 + + ++ KLM+G+LFS+RSF +K+ P + F SF+T+ YKL+Y E Sbjct: 29 IPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG-------------FLSFQTSRYKLHYYE 75 Query: 515 SPSGIKLILLTHPRTGDQRDALKHIYS-LYVEYVVKNPLYAPGSPIKCDLFNKHLDQYVK 339 +P+GIK+++ T G RD L HIYS LYVE+VVKNPL G ++ +LF LD YV+ Sbjct: 76 TPTGIKVVMNTDLGVGPIRDVLHHIYSALYVEFVVKNPLCPLGQTVQSELFRSRLDSYVR 135 Query: 338 TL 333 +L Sbjct: 136 SL 137
>TPPC1_HUMAN (Q9Y5R8) Trafficking protein particle complex subunit 1 (BET5| homolog) (Multiple myeloma protein 2) (MUM-2) Length = 145 Score = 96.3 bits (238), Expect = 8e-20 Identities = 51/122 (41%), Positives = 75/122 (61%), Gaps = 1/122 (0%) Frame = -2 Query: 695 LARNQDQKLMFGLLFSLRSFTAKIDPTSTEHANLGAPLLPGQGCSFHSFKTNTYKLNYME 516 + + ++ KLM+G+LFS+RSF +K+ P + F +F+T+ YKL+Y E Sbjct: 29 IPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG-------------FLAFQTSRYKLHYYE 75 Query: 515 SPSGIKLILLTHPRTGDQRDALKHIYS-LYVEYVVKNPLYAPGSPIKCDLFNKHLDQYVK 339 +P+GIK+++ T G RD L HIYS LYVE VVKNPL G ++ +LF LD YV+ Sbjct: 76 TPTGIKVVMNTDLGVGPIRDVLHHIYSALYVELVVKNPLCPLGQTVQSELFRSRLDSYVR 135 Query: 338 TL 333 +L Sbjct: 136 SL 137
>BET5_SCHPO (Q9UT70) Transport protein particle subunit bet5| Length = 155 Score = 77.0 bits (188), Expect = 5e-14 Identities = 44/122 (36%), Positives = 70/122 (57%), Gaps = 7/122 (5%) Frame = -2 Query: 677 QKLMFGLLFSLRSFTAKIDPTSTEHANLGAPLLPGQGCSFHSFKTNTYKLNYMESPSGIK 498 +KL+FG++FSLR+ KI + F S+ T+ YKL++ E+P+ ++ Sbjct: 46 EKLIFGVVFSLRNMVKKITADQDQ---------------FMSYTTSKYKLHFYETPTNLR 90 Query: 497 LILLTHPRTGDQRDALKHIY-SLYVEYVVKNPLYAPGSP------IKCDLFNKHLDQYVK 339 LI +T+P+ L+ IY +LYVE+VVK+PLY P I C++F LD++V+ Sbjct: 91 LIFITNPKIDSLTHVLQQIYTTLYVEFVVKHPLYTHVPPSAEEGGINCEIFRITLDRFVR 150 Query: 338 TL 333 TL Sbjct: 151 TL 152
>TPPC4_MOUSE (Q9ES56) Trafficking protein particle complex subunit 4 (Synbindin)| (TRS23 homolog) Length = 219 Score = 64.7 bits (156), Expect = 3e-10 Identities = 30/82 (36%), Positives = 52/82 (63%), Gaps = 1/82 (1%) Frame = -2 Query: 596 LGAPLLPGQGCS-FHSFKTNTYKLNYMESPSGIKLILLTHPRTGDQRDALKHIYSLYVEY 420 +G+ L P QG S +T+T+KL+ ++ +GIK ++L PR L+ IY +Y ++ Sbjct: 121 IGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSDF 180 Query: 419 VVKNPLYAPGSPIKCDLFNKHL 354 +KNP Y+ PI+C+LF+++L Sbjct: 181 ALKNPFYSLEMPIRCELFDQNL 202
>TPPC4_HUMAN (Q9Y296) Trafficking protein particle complex subunit 4 (Synbindin)| (TRS23 homolog) (Hematopoietic stem/progenitor cell protein 172) Length = 219 Score = 64.3 bits (155), Expect = 3e-10 Identities = 30/82 (36%), Positives = 52/82 (63%), Gaps = 1/82 (1%) Frame = -2 Query: 596 LGAPLLPGQGCS-FHSFKTNTYKLNYMESPSGIKLILLTHPRTGDQRDALKHIYSLYVEY 420 +G+ L P QG S +T+T+KL+ ++ +GIK ++L PR L+ IY +Y ++ Sbjct: 121 IGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSDF 180 Query: 419 VVKNPLYAPGSPIKCDLFNKHL 354 +KNP Y+ PI+C+LF+++L Sbjct: 181 ALKNPFYSLEMPIRCELFDQNL 202
>BET5_YEAST (Q03630) Transport protein particle 18 kDa subunit (TRAPP 18 kDa| subunit) Length = 159 Score = 46.6 bits (109), Expect = 7e-05 Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 1/95 (1%) Frame = -2 Query: 683 QDQKLMFGLLFSLRSFTAKIDPTSTEHANLGAPLLPGQGCSFHSFKTNTYKLNYMESPSG 504 +D KL++G++FSLRS T K+ S ++ S T Y+++ + SG Sbjct: 39 EDAKLLYGMIFSLRSITQKLSKGSVKN-------------DIRSISTGKYRVHTYCTASG 85 Query: 503 IKLILLTHPRTGDQRDALKHIYS-LYVEYVVKNPL 402 + +LL+ + L++IYS +YV+YV N L Sbjct: 86 LWFVLLSDFKQQSYTQVLQYIYSHIYVKYVSNNLL 120
>TRS23_YEAST (Q03784) Transport protein particle 23 kDa subunit (TRAPP 23 kDa| subunit) Length = 219 Score = 37.0 bits (84), Expect = 0.059 Identities = 15/40 (37%), Positives = 28/40 (70%) Frame = -2 Query: 452 LKHIYSLYVEYVVKNPLYAPGSPIKCDLFNKHLDQYVKTL 333 L+ +Y LY +YV+K+P Y+ PI+ +LF++ + + V+ L Sbjct: 179 LRKVYCLYSDYVMKDPSYSMEMPIRSNLFDEKVKKMVENL 218
>TPPC2_MOUSE (Q9CQP2) Trafficking protein particle complex protein 2 (Sedlin)| Length = 140 Score = 32.7 bits (73), Expect = 1.1 Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 4/67 (5%) Frame = -2 Query: 548 KTNTYKLNYMESPSGIKLILLTHPRTGDQRDALKH----IYSLYVEYVVKNPLYAPGSPI 381 K N + ++ + ++ I+L R Q D +K+ +Y LY+++ + NP Y P SPI Sbjct: 66 KFNEWFVSAFVTAGHMRFIMLHDVR---QEDGIKNFFTDVYDLYIKFAM-NPFYEPNSPI 121 Query: 380 KCDLFNK 360 + F++ Sbjct: 122 RSSAFDR 128
>TPPC2_HUMAN (O14582) Trafficking protein particle complex protein 2 (Sedlin)| (MBP-1-interacting protein 2A) (MIP-2A) Length = 140 Score = 31.6 bits (70), Expect = 2.5 Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 4/67 (5%) Frame = -2 Query: 548 KTNTYKLNYMESPSGIKLILLTHPRTGDQRDALKH----IYSLYVEYVVKNPLYAPGSPI 381 K N + ++ + ++ I+L R Q D +K+ +Y LY+++ + NP Y P SPI Sbjct: 66 KFNEWFVSAFVTAGHMRFIMLHDIR---QEDGIKNFFTDVYDLYIKFSM-NPFYEPNSPI 121 Query: 380 KCDLFNK 360 + F++ Sbjct: 122 RSSAFDR 128
>TRI66_MOUSE (Q924W6) Tripartite motif protein 66| Length = 1209 Score = 29.6 bits (65), Expect = 9.4 Identities = 11/30 (36%), Positives = 16/30 (53%) Frame = -1 Query: 141 SGPVESHCIVHLQPALMVLCTDCDLIAIHS 52 SG +C +H Q L + C CD++ HS Sbjct: 58 SGDFALYCPLHTQEVLKLFCETCDVLTCHS 87
>DCAM_TRYBB (P50244) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 370 Score = 29.6 bits (65), Expect = 9.4 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = -2 Query: 584 LLPGQGCSFHSFKTNTYKLNYMESPSGI 501 + P + CSF S++TNT LNY + G+ Sbjct: 263 ITPEEHCSFASYETNTCALNYSKCICGV 290 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 108,695,230 Number of Sequences: 219361 Number of extensions: 2323504 Number of successful extensions: 6319 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 5992 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6311 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7139613222 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
