ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbaal4j22 |
|---|---|
| Clone Library Name | barley_pub |
>CAND1_RAT (P97536) Cullin-associated NEDD8-dissociated protein 1| (Cullin-associated and neddylation-dissociated protein 1) (p120 CAND1) (TBP-interacting protein TIP120A) (TBP-interacting protein of 120 kDa A) Length = 1230 Score = 115 bits (289), Expect = 8e-26 Identities = 62/149 (41%), Positives = 90/149 (60%) Frame = -3 Query: 638 FKHVVDDGLELRKAAFECVDTLLDSCLDQVNPSAFIVPFLLSGLGDHYDVKMPCHLILSK 459 FKH VDDGL++RKAAFEC+ TLLDSCLD+++ F+ + GL DHYD+KM L+L + Sbjct: 1071 FKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFL-NHVEDGLKDHYDIKMLTFLMLVR 1129 Query: 458 LADKCPSAVLAVLDSLVEPLEKTIVHKPKGDAVKQEIDRNEDXXXXXXXXXXXXXXXSGS 279 L+ CPSAVL LD LVEPL T K K ++VKQE ++ ++ + Sbjct: 1130 LSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIPEA 1189 Query: 278 DYSMKLKKLMSKITSTSSLAEKYNSVRSE 192 + S + + S+I+S LA + S++ + Sbjct: 1190 EKSPLMSEFQSQISSNPELAAIFESIQKD 1218
>CAND1_PONPY (Q5R6L5) Cullin-associated NEDD8-dissociated protein 1| (Cullin-associated and neddylation-dissociated protein 1) (p120 CAND1) Length = 1230 Score = 115 bits (289), Expect = 8e-26 Identities = 62/149 (41%), Positives = 90/149 (60%) Frame = -3 Query: 638 FKHVVDDGLELRKAAFECVDTLLDSCLDQVNPSAFIVPFLLSGLGDHYDVKMPCHLILSK 459 FKH VDDGL++RKAAFEC+ TLLDSCLD+++ F+ + GL DHYD+KM L+L + Sbjct: 1071 FKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFL-NHVEDGLKDHYDIKMLTFLMLVR 1129 Query: 458 LADKCPSAVLAVLDSLVEPLEKTIVHKPKGDAVKQEIDRNEDXXXXXXXXXXXXXXXSGS 279 L+ CPSAVL LD LVEPL T K K ++VKQE ++ ++ + Sbjct: 1130 LSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIPEA 1189 Query: 278 DYSMKLKKLMSKITSTSSLAEKYNSVRSE 192 + S + + S+I+S LA + S++ + Sbjct: 1190 EKSPLMSEFQSQISSNPELAAIFESIQKD 1218
>CAND1_MOUSE (Q6ZQ38) Cullin-associated NEDD8-dissociated protein 1| (Cullin-associated and neddylation-dissociated protein 1) (p120 CAND1) Length = 1230 Score = 115 bits (289), Expect = 8e-26 Identities = 62/149 (41%), Positives = 90/149 (60%) Frame = -3 Query: 638 FKHVVDDGLELRKAAFECVDTLLDSCLDQVNPSAFIVPFLLSGLGDHYDVKMPCHLILSK 459 FKH VDDGL++RKAAFEC+ TLLDSCLD+++ F+ + GL DHYD+KM L+L + Sbjct: 1071 FKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFL-NHVEDGLKDHYDIKMLTFLMLVR 1129 Query: 458 LADKCPSAVLAVLDSLVEPLEKTIVHKPKGDAVKQEIDRNEDXXXXXXXXXXXXXXXSGS 279 L+ CPSAVL LD LVEPL T K K ++VKQE ++ ++ + Sbjct: 1130 LSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIPEA 1189 Query: 278 DYSMKLKKLMSKITSTSSLAEKYNSVRSE 192 + S + + S+I+S LA + S++ + Sbjct: 1190 EKSPLMSEFQSQISSNPELAAIFESIQKD 1218
>CAND1_HUMAN (Q86VP6) Cullin-associated NEDD8-dissociated protein 1| (Cullin-associated and neddylation-dissociated protein 1) (p120 CAND1) (TBP-interacting protein TIP120A) (TBP-interacting protein of 120 kDa A) Length = 1230 Score = 115 bits (289), Expect = 8e-26 Identities = 62/149 (41%), Positives = 90/149 (60%) Frame = -3 Query: 638 FKHVVDDGLELRKAAFECVDTLLDSCLDQVNPSAFIVPFLLSGLGDHYDVKMPCHLILSK 459 FKH VDDGL++RKAAFEC+ TLLDSCLD+++ F+ + GL DHYD+KM L+L + Sbjct: 1071 FKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFL-NHVEDGLKDHYDIKMLTFLMLVR 1129 Query: 458 LADKCPSAVLAVLDSLVEPLEKTIVHKPKGDAVKQEIDRNEDXXXXXXXXXXXXXXXSGS 279 L+ CPSAVL LD LVEPL T K K ++VKQE ++ ++ + Sbjct: 1130 LSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIPEA 1189 Query: 278 DYSMKLKKLMSKITSTSSLAEKYNSVRSE 192 + S + + S+I+S LA + S++ + Sbjct: 1190 EKSPLMSEFQSQISSNPELAAIFESIQKD 1218
>CAND2_RAT (Q9R0L4) Cullin-associated NEDD8-dissociated protein 2| (Cullin-associated and neddylation-dissociated protein 2) (p120 CAND2) (TBP-interacting protein TIP120B) (TBP-interacting protein of 120 kDa B) (TBP-interacting protein b) Length = 1273 Score = 101 bits (252), Expect = 2e-21 Identities = 54/149 (36%), Positives = 85/149 (57%) Frame = -3 Query: 638 FKHVVDDGLELRKAAFECVDTLLDSCLDQVNPSAFIVPFLLSGLGDHYDVKMPCHLILSK 459 FKH VDDGL++RKAAFEC+ +LL+SCL Q++ F+ + GL DHYD++M ++L++ Sbjct: 1113 FKHTVDDGLDVRKAAFECMYSLLESCLGQLDICEFL-NHVEDGLKDHYDIRMLTFIMLAR 1171 Query: 458 LADKCPSAVLAVLDSLVEPLEKTIVHKPKGDAVKQEIDRNEDXXXXXXXXXXXXXXXSGS 279 LA CP+ VL +D L+EPL T K K +VKQE+++ ++ Sbjct: 1172 LAALCPAPVLQRVDRLIEPLRATCTAKVKAGSVKQELEKQDELKRSAMRAVAALMTNPEV 1231 Query: 278 DYSMKLKKLMSKITSTSSLAEKYNSVRSE 192 S + ++I S LA + S++ + Sbjct: 1232 RKSPSVADFSTQIRSNPELATLFESIQKD 1260
>CAND2_MOUSE (Q6ZQ73) Cullin-associated NEDD8-dissociated protein 2| (Cullin-associated and neddylation-dissociated protein 2) (p120 CAND2) (TBP-interacting protein TIP120B) (TBP-interacting protein of 120 kDa B) Length = 1235 Score = 101 bits (252), Expect = 2e-21 Identities = 54/149 (36%), Positives = 84/149 (56%) Frame = -3 Query: 638 FKHVVDDGLELRKAAFECVDTLLDSCLDQVNPSAFIVPFLLSGLGDHYDVKMPCHLILSK 459 FKH VDDGL++RKAAFEC+ +LL+SCL Q++ F+ + GL DHYD++M ++L++ Sbjct: 1075 FKHTVDDGLDVRKAAFECMYSLLESCLGQLDMCEFL-NHVEDGLKDHYDIRMLTFIMLAR 1133 Query: 458 LADKCPSAVLAVLDSLVEPLEKTIVHKPKGDAVKQEIDRNEDXXXXXXXXXXXXXXXSGS 279 LA CP+ VL +D L+EPL T K K +VKQE+++ E+ Sbjct: 1134 LATLCPAPVLQRVDRLIEPLRATCTAKVKAGSVKQELEKQEELKRSAMRAVAALLTNPEV 1193 Query: 278 DYSMKLKKLMSKITSTSSLAEKYNSVRSE 192 S + ++I S L + S++ + Sbjct: 1194 RKSPTVADFSAQIRSNPELTTLFESIQKD 1222
>CAND2_HUMAN (O75155) Cullin-associated NEDD8-dissociated protein 2| (Cullin-associated and neddylation-dissociated protein 2) (p120 CAND2) Length = 1119 Score = 100 bits (250), Expect = 3e-21 Identities = 54/149 (36%), Positives = 84/149 (56%) Frame = -3 Query: 638 FKHVVDDGLELRKAAFECVDTLLDSCLDQVNPSAFIVPFLLSGLGDHYDVKMPCHLILSK 459 FKH VDDGL++RKAAFEC+ +LL+SCL Q++ F+ + GL DHYD++M +++++ Sbjct: 959 FKHTVDDGLDVRKAAFECMYSLLESCLGQLDICEFL-NHVEDGLKDHYDIRMLTFIMVAR 1017 Query: 458 LADKCPSAVLAVLDSLVEPLEKTIVHKPKGDAVKQEIDRNEDXXXXXXXXXXXXXXXSGS 279 LA CP+ VL +D L+EPL T K K +VKQE ++ ++ Sbjct: 1018 LATLCPAPVLQRVDRLIEPLRATCTAKVKAGSVKQEFEKQDELKRSAMRAVAALLTIPEV 1077 Query: 278 DYSMKLKKLMSKITSTSSLAEKYNSVRSE 192 S + S+I S LA + S++ + Sbjct: 1078 GKSPIMADFSSQIRSNPELAALFESIQKD 1106
>CHLE_MIMIV (Q5UR02) Probable cholinesterase precursor (EC 3.1.1.8)| (Acylcholine acylhydrolase) Length = 579 Score = 31.2 bits (69), Expect = 2.7 Identities = 12/31 (38%), Positives = 17/31 (54%) Frame = +2 Query: 5 NGF*WSTPILYSKIYSIPYNATTFQPKLVQY 97 N W P+ Y+K + P N T ++PK QY Sbjct: 58 NNLRWKAPVPYTKKWHNPLNTTEYKPKCPQY 88
>ESR2_MICUN (P57781) Estrogen receptor beta (ER-beta)| Length = 673 Score = 31.2 bits (69), Expect = 2.7 Identities = 11/32 (34%), Positives = 18/32 (56%) Frame = +1 Query: 100 STNWPQNRQPCVPNLTQLCPNIYIHTKSSSHS 195 S WP + P +P+LT CP ++ + S H+ Sbjct: 99 SAFWPSHNHPTMPSLTLHCPESIVYNEPSPHA 130
>MUTS_BACFN (Q5L7B7) DNA mismatch repair protein mutS| Length = 879 Score = 30.0 bits (66), Expect = 6.1 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 5/77 (6%) Frame = -3 Query: 416 SLVEPLEKTIVHKP-----KGDAVKQEIDRNEDXXXXXXXXXXXXXXXSGSDYSMKLKKL 252 S+ + +EK I + P KG +K +D D G DY +K+++ Sbjct: 410 SIRDRIEKEINNDPPLLINKGGVIKDGVDTELDELRQIAYS--------GKDYLLKIQQR 461 Query: 251 MSKITSTSSLAEKYNSV 201 S++T SL YNSV Sbjct: 462 ESELTGIPSLKIAYNSV 478
>MUTS_BACFR (Q64MG7) DNA mismatch repair protein mutS| Length = 862 Score = 30.0 bits (66), Expect = 6.1 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 5/77 (6%) Frame = -3 Query: 416 SLVEPLEKTIVHKP-----KGDAVKQEIDRNEDXXXXXXXXXXXXXXXSGSDYSMKLKKL 252 S+ + +EK I + P KG +K +D D G DY +K+++ Sbjct: 393 SIRDRIEKEINNDPPLLINKGGVIKDGVDTELDELRQIAYS--------GKDYLLKIQQR 444 Query: 251 MSKITSTSSLAEKYNSV 201 S++T SL YNSV Sbjct: 445 ESELTGIPSLKIAYNSV 461 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,223,152 Number of Sequences: 219361 Number of extensions: 1575784 Number of successful extensions: 3673 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 3565 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3666 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5995743495 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
