ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal4j20 |
|---|---|
| Clone Library Name | barley_pub |
>PSAF_HORVU (P13192) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) Length = 235 Score = 192 bits (489), Expect = 2e-49 Identities = 92/92 (100%), Positives = 92/92 (100%) Frame = -1 Query: 434 GLPHLIVSGDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELA 255 GLPHLIVSGDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELA Sbjct: 144 GLPHLIVSGDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELA 203 Query: 254 ARIIPRGFIWPVAAYRELINGDLVVDDADIGY 159 ARIIPRGFIWPVAAYRELINGDLVVDDADIGY Sbjct: 204 ARIIPRGFIWPVAAYRELINGDLVVDDADIGY 235
>PSAF_SPIOL (P12355) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) Length = 231 Score = 150 bits (378), Expect = 2e-36 Identities = 68/84 (80%), Positives = 76/84 (90%) Frame = -1 Query: 434 GLPHLIVSGDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELA 255 GLPHLIVSGDQRHWGEFITPG+LFLYIAGWIGWVGRSYLIA+ EKKP +EIIIDV LA Sbjct: 144 GLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAIRDEKKPTQKEIIIDVPLA 203 Query: 254 ARIIPRGFIWPVAAYRELINGDLV 183 + ++ RGF WPVAAYREL+NG+LV Sbjct: 204 SSLLFRGFSWPVAAYRELLNGELV 227
>PSAF_FLATR (P46486) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) Length = 232 Score = 148 bits (374), Expect = 5e-36 Identities = 66/84 (78%), Positives = 75/84 (89%) Frame = -1 Query: 434 GLPHLIVSGDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELA 255 GLPHLIVSGDQRHWGEFITPG+LFLYIAGWIGWVGRSYLIA+ EKKP +EIIIDV LA Sbjct: 145 GLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAIRDEKKPTQKEIIIDVPLA 204 Query: 254 ARIIPRGFIWPVAAYRELINGDLV 183 +++ RGF WPVAAYRE +NG+L+ Sbjct: 205 TKLLFRGFSWPVAAYREYLNGELI 228
>PSAF_SYNY3 (P29256) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 165 Score = 107 bits (268), Expect = 1e-23 Identities = 49/90 (54%), Positives = 65/90 (72%) Frame = -1 Query: 434 GLPHLIVSGDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELA 255 G PHLIV G H G+F+ P +LFLYIAGWIGWVGRSYLI + K P M+E++I+V LA Sbjct: 71 GYPHLIVDGRFTHAGDFLIPSILFLYIAGWIGWVGRSYLIEIRESKNPEMQEVVINVPLA 130 Query: 254 ARIIPRGFIWPVAAYRELINGDLVVDDADI 165 + + GF+WP+AA E +G LV+ D++I Sbjct: 131 IKKMLGGFLWPLAAVGEYTSGKLVMKDSEI 160
>PSAF_ODOSI (P49483) Photosystem I reaction center subunit III (PSI-F)| Length = 185 Score = 106 bits (265), Expect = 2e-23 Identities = 50/90 (55%), Positives = 63/90 (70%) Frame = -1 Query: 434 GLPHLIVSGDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELA 255 GLPHLI G H EFI PG F+YI+GWIGWVGR YL AVS K P EIII+V LA Sbjct: 91 GLPHLIADGRWSHAAEFILPGFGFIYISGWIGWVGRKYLRAVSTTKNPTESEIIINVPLA 150 Query: 254 ARIIPRGFIWPVAAYRELINGDLVVDDADI 165 +I+ G+IWP++A++E I+ DLV D ++ Sbjct: 151 LKIMTTGYIWPISAWQEFISNDLVALDEEV 180
>PSAF_GUITH (O78457) Photosystem I reaction center subunit III (PSI-F)| Length = 183 Score = 105 bits (263), Expect = 4e-23 Identities = 48/90 (53%), Positives = 62/90 (68%) Frame = -1 Query: 434 GLPHLIVSGDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELA 255 GLPHLI G H GEF+ PG+ FLYIAGWIGWVGR+Y+ S KP +EIIIDV +A Sbjct: 89 GLPHLIADGRWSHAGEFMVPGLFFLYIAGWIGWVGRNYVQFASQTDKPTEKEIIIDVPVA 148 Query: 254 ARIIPRGFIWPVAAYRELINGDLVVDDADI 165 I G+IWP AA++E +G+L+ + +I Sbjct: 149 LSFISTGYIWPFAAFKEFTSGNLIAKEDEI 178
>PSAF_PORPU (P51193) Photosystem I reaction center subunit III (PSI-F)| Length = 185 Score = 105 bits (263), Expect = 4e-23 Identities = 47/90 (52%), Positives = 63/90 (70%) Frame = -1 Query: 434 GLPHLIVSGDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELA 255 GLPHLI G G+F+ PG+LFLYI GWIGWVGR YL++V+ KP +EII+DV LA Sbjct: 91 GLPHLISDGRWSRAGDFVFPGLLFLYITGWIGWVGRGYLLSVAKTSKPTEKEIILDVPLA 150 Query: 254 ARIIPRGFIWPVAAYRELINGDLVVDDADI 165 + + GF WP+AA++E +G L+ + DI Sbjct: 151 VKFMSSGFAWPLAAWQEFSSGQLIAPNDDI 180
>PSAF_SYNP6 (P31083) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 159 Score = 105 bits (262), Expect = 5e-23 Identities = 50/90 (55%), Positives = 63/90 (70%) Frame = -1 Query: 434 GLPHLIVSGDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELA 255 GLPHLIV G H G+FI P +LFLYIAGWIGWVGRSYL A+ +K A +EI+IDV LA Sbjct: 65 GLPHLIVDGRLDHAGDFIIPSLLFLYIAGWIGWVGRSYLQAIKSDKDAAGKEIVIDVPLA 124 Query: 254 ARIIPRGFIWPVAAYRELINGDLVVDDADI 165 + GF WP+AA++E +G L+ +I Sbjct: 125 VKFSLTGFAWPLAAFQEFSSGKLLAKADEI 154
>PSAF_SYNEN (P0A402) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 105 bits (261), Expect = 6e-23 Identities = 50/90 (55%), Positives = 63/90 (70%) Frame = -1 Query: 434 GLPHLIVSGDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELA 255 GLPHL+V G G+F+ P VLFLYIAGWIGWVGR+YLIAV + +EIIIDV LA Sbjct: 70 GLPHLVVDGRLSRAGDFLIPSVLFLYIAGWIGWVGRAYLIAVRNSGEANEKEIIIDVPLA 129 Query: 254 ARIIPRGFIWPVAAYRELINGDLVVDDADI 165 + + GF WP+AA +EL +G+L D +I Sbjct: 130 IKCMLTGFAWPLAALKELASGELTAKDNEI 159
>PSAF_SYNEL (P0A401) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 105 bits (261), Expect = 6e-23 Identities = 50/90 (55%), Positives = 63/90 (70%) Frame = -1 Query: 434 GLPHLIVSGDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELA 255 GLPHL+V G G+F+ P VLFLYIAGWIGWVGR+YLIAV + +EIIIDV LA Sbjct: 70 GLPHLVVDGRLSRAGDFLIPSVLFLYIAGWIGWVGRAYLIAVRNSGEANEKEIIIDVPLA 129 Query: 254 ARIIPRGFIWPVAAYRELINGDLVVDDADI 165 + + GF WP+AA +EL +G+L D +I Sbjct: 130 IKCMLTGFAWPLAALKELASGELTAKDNEI 159
>PSAF_ANAVT (P31091) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 100 bits (249), Expect = 2e-21 Identities = 46/90 (51%), Positives = 61/90 (67%) Frame = -1 Query: 434 GLPHLIVSGDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELA 255 G PHLIV G G+F+ P +LFLYIAGWIGWVGR+YL A+ + +EI +D+ LA Sbjct: 70 GYPHLIVDGRLDRAGDFLIPSILFLYIAGWIGWVGRAYLQAIKKDSDTEQKEIQLDLGLA 129 Query: 254 ARIIPRGFIWPVAAYRELINGDLVVDDADI 165 II GF WP AA +EL++G+L D++I Sbjct: 130 LPIIATGFAWPAAAVKELLSGELTAKDSEI 159
>PSAF_CYAPA (P48115) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 186 Score = 100 bits (249), Expect = 2e-21 Identities = 47/90 (52%), Positives = 61/90 (67%) Frame = -1 Query: 434 GLPHLIVSGDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELA 255 GLPHLI G H GEF PG+LFLYIAG+IGW GRSYL AV+ +EIIID+ +A Sbjct: 92 GLPHLITDGRWSHAGEFTIPGLLFLYIAGFIGWSGRSYLQAVAASDNSTEKEIIIDIPVA 151 Query: 254 ARIIPRGFIWPVAAYRELINGDLVVDDADI 165 + + +GF+WP+AA +E +G L D +I Sbjct: 152 LQSVSKGFVWPLAALQEFSSGKLTARDEEI 181
>PSAF_ANASP (P58564) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 99.8 bits (247), Expect = 3e-21 Identities = 45/90 (50%), Positives = 61/90 (67%) Frame = -1 Query: 434 GLPHLIVSGDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELA 255 G PHLIV G G+F+ P +LFLYIAGWIGWVGR+YL A+ + +EI +D+ +A Sbjct: 70 GYPHLIVDGRLDRAGDFLIPSILFLYIAGWIGWVGRAYLQAIKKDSDTEQKEIQLDLGIA 129 Query: 254 ARIIPRGFIWPVAAYRELINGDLVVDDADI 165 II GF WP AA +EL++G+L D++I Sbjct: 130 LPIIATGFAWPAAAVKELLSGELTAKDSEI 159
>PSAF_CYACA (Q9TLW6) Photosystem I reaction center subunit III (PSI-F)| Length = 187 Score = 95.5 bits (236), Expect = 5e-20 Identities = 45/90 (50%), Positives = 56/90 (62%) Frame = -1 Query: 434 GLPHLIVSGDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELA 255 GLPHLI GD +H GEF P VLF+YIAGWIGW G+ YL KP EIIID+ A Sbjct: 93 GLPHLITDGDWQHSGEFFIPSVLFIYIAGWIGWAGKGYLQYSKTLTKPNENEIIIDLPRA 152 Query: 254 ARIIPRGFIWPVAAYRELINGDLVVDDADI 165 + + GF WP+ A +E NG L+ + +I Sbjct: 153 LKYMFSGFAWPILALKEFKNGSLLASNDEI 182
>PSAF_MASLA (O31127) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 165 Score = 94.0 bits (232), Expect = 1e-19 Identities = 44/91 (48%), Positives = 60/91 (65%), Gaps = 1/91 (1%) Frame = -1 Query: 434 GLPHLIVSGDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGE-KKPAMREIIIDVEL 258 GLPHLIV G H G+F+ P +LFLYIAGWIGWVGR+YL + + +EI I++ + Sbjct: 70 GLPHLIVDGRLDHAGDFLIPSILFLYIAGWIGWVGRAYLQTIKKQGSNVEQKEIQIELPI 129 Query: 257 AARIIPRGFIWPVAAYRELINGDLVVDDADI 165 A I+ GF WP AA +E ++G+L D +I Sbjct: 130 ALPIMLSGFAWPAAAIKEFLSGELTAKDEEI 160
>PSAF_CHLRE (P12356) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) (P21 protein) Length = 227 Score = 85.1 bits (209), Expect = 7e-17 Identities = 47/94 (50%), Positives = 59/94 (62%), Gaps = 4/94 (4%) Frame = -1 Query: 434 GLPHLIVSGDQR----HWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIID 267 GLPHLI H GE P FLY+AG+IG+VGR YLIAV GE KP +EIIID Sbjct: 129 GLPHLIADPGLALKYGHAGEVFIPTFGFLYVAGYIGYVGRQYLIAVKGEAKPTDKEIIID 188 Query: 266 VELAARIIPRGFIWPVAAYRELINGDLVVDDADI 165 V LA ++ +G WP+AA +EL G L+ + +I Sbjct: 189 VPLATKLAWQGAGWPLAAVQELQRGTLLEKEENI 222
>PSAF_PROMA (Q9X7I4) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 183 Score = 79.0 bits (193), Expect = 5e-15 Identities = 41/99 (41%), Positives = 58/99 (58%), Gaps = 9/99 (9%) Frame = -1 Query: 434 GLPHLIVSG---------DQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMR 282 GLPHL+++ ++ H G+ + PG +F+Y+AG IGW GR YL A K PA Sbjct: 79 GLPHLVIAATIEPWGALANRHHEGDILIPGHIFIYVAGIIGWSGREYLRASKKTKNPAEN 138 Query: 281 EIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDDADI 165 EIIID LA + + +G WPV A ++ +GDL D +I Sbjct: 139 EIIIDFALARQCLIKGAAWPVEANKQGRSGDLREKDENI 177
>PSAF_GLOVI (Q7NH05) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 181 Score = 77.0 bits (188), Expect = 2e-14 Identities = 42/87 (48%), Positives = 52/87 (59%) Frame = -1 Query: 434 GLPHLIVSGDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELA 255 G PHLI SG G+F+ P VLFL+IAG +GW GR YL E K EIIID+ A Sbjct: 91 GYPHLITSGQLDRAGDFLIPSVLFLWIAGALGWAGRLYL----AESKGPEDEIIIDLPKA 146 Query: 254 ARIIPRGFIWPVAAYRELINGDLVVDD 174 + + G IWPV A ELI+G + V + Sbjct: 147 IKCLLLGLIWPVQAIPELISGKIRVPE 173
>EFTS_RALSO (Q8XZJ0) Elongation factor Ts (EF-Ts)| Length = 292 Score = 31.2 bits (69), Expect = 1.1 Identities = 17/47 (36%), Positives = 27/47 (57%) Frame = +3 Query: 291 GLLLAADGDEVAASDPADPAGDVEEEHAGGDELAPVPLVAADDEVGQ 431 G+++A DGDEVAA D A A ++ DE+ P L+A + + + Sbjct: 159 GVMVAFDGDEVAAKDVAMHAAAMKPVALSSDEV-PAELIAKERSIAE 204
>BTBD4_HUMAN (Q86UZ6) BTB/POZ domain-containing protein 4 (Zinc finger protein| 340) Length = 589 Score = 30.4 bits (67), Expect = 1.9 Identities = 15/37 (40%), Positives = 19/37 (51%) Frame = +3 Query: 312 GDEVAASDPADPAGDVEEEHAGGDELAPVPLVAADDE 422 GD DP DP G+ EE + LAP + ADD+ Sbjct: 530 GDGPYLEDPEDPRGEAEELGEDDEGLAPEDALLADDK 566
>CLC_DROME (Q9VWA1) Clathrin light chain (dClc)| Length = 219 Score = 30.0 bits (66), Expect = 2.5 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 11/51 (21%) Frame = +3 Query: 312 GDEVAASDPADPA-----------GDVEEEHAGGDELAPVPLVAADDEVGQ 431 GD+ AA + DPA GD+E E GG AP P + D+ +G+ Sbjct: 4 GDDFAAKEDVDPAAEFLAREQSALGDLEAEITGGSASAP-PAASTDEGLGE 53
>YHBP_ECO57 (Q8XA94) UPF0306 protein yhbP| Length = 147 Score = 29.3 bits (64), Expect = 4.3 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = -1 Query: 155 LAAMRAWLASRSQVRWAAEDEG-LWCRSVW 69 L A+ WLA + V W + EG LWC + + Sbjct: 4 LTAISRWLAKQHVVTWCVQQEGELWCANAF 33
>YHBP_ECOL6 (Q8FD95) UPF0306 protein yhbP| Length = 140 Score = 29.3 bits (64), Expect = 4.3 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = -1 Query: 155 LAAMRAWLASRSQVRWAAEDEG-LWCRSVW 69 L A+ WLA + V W + EG LWC + + Sbjct: 4 LTAISRWLAKQHVVTWCVQQEGELWCANAF 33
>SYM_CLOPE (Q8XHG1) Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA| ligase) (MetRS) Length = 645 Score = 28.9 bits (63), Expect = 5.7 Identities = 15/38 (39%), Positives = 22/38 (57%) Frame = +3 Query: 312 GDEVAASDPADPAGDVEEEHAGGDELAPVPLVAADDEV 425 GD+V D P DVEE+ A + L P P+ A++E+ Sbjct: 494 GDKVVKGDVIFPRIDVEEKLAELEALKPAPVKPANEEL 531
>YHBP_SHIFL (P67763) UPF0306 protein yhbP| Length = 147 Score = 28.9 bits (63), Expect = 5.7 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = -1 Query: 155 LAAMRAWLASRSQVRWAAEDEG-LWCRSVW 69 L A+ WLA + V W + EG LWC + + Sbjct: 4 LIAISRWLAKQHVVTWCVQQEGELWCANAF 33
>YHBP_ECOLI (P67762) UPF0306 protein yhbP| Length = 147 Score = 28.9 bits (63), Expect = 5.7 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = -1 Query: 155 LAAMRAWLASRSQVRWAAEDEG-LWCRSVW 69 L A+ WLA + V W + EG LWC + + Sbjct: 4 LIAISRWLAKQHVVTWCVQQEGELWCANAF 33
>YN56_CAEEL (P34590) Hypothetical protein ZC21.6| Length = 306 Score = 28.5 bits (62), Expect = 7.4 Identities = 12/33 (36%), Positives = 16/33 (48%) Frame = -1 Query: 416 VSGDQRHWGEFITPGVLFLYIAGWIGWVGRSYL 318 VS RHWG + G+ + AG G +YL Sbjct: 227 VSSYHRHWGSMLRLGIHLILFAGTCALTGTAYL 259
>IF39_HUMAN (P55884) Eukaryotic translation initiation factor 3 subunit 9| (eIF-3 eta) (eIF3 p116) (eIF3 p110) (eIF3b) (Prt1 homolog) (hPrt1) Length = 814 Score = 28.5 bits (62), Expect = 7.4 Identities = 15/31 (48%), Positives = 16/31 (51%) Frame = +3 Query: 309 DGDEVAASDPADPAGDVEEEHAGGDELAPVP 401 D DE + SDP D DV EE GD L P Sbjct: 147 DADEPSFSDPEDFVDDVSEEELLGDVLKDRP 177
>CLIC5_BOVIN (P35526) Chloride intracellular channel protein 5 (Chlorine channel| protein p64) Length = 437 Score = 28.1 bits (61), Expect = 9.7 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%) Frame = +3 Query: 303 AADGDEVAASDPADPAG-DVEEEHAGGDEL 389 A+D +E ASDP +P G D EE G+E+ Sbjct: 126 ASDPEEPQASDPEEPQGPDPEEPQENGNEM 155
>PPZ1_YEAST (P26570) Serine/threonine-protein phosphatase PP-Z1 (EC 3.1.3.16)| Length = 691 Score = 28.1 bits (61), Expect = 9.7 Identities = 10/17 (58%), Positives = 14/17 (82%) Frame = +1 Query: 61 HQAHTDRHHKPSSSAAH 111 H +HT+R+H PSSS +H Sbjct: 79 HSSHTNRYHFPSSSHSH 95 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,532,823 Number of Sequences: 219361 Number of extensions: 902752 Number of successful extensions: 3098 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 2867 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3093 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
